Rh7BG294100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000708
Physical Location & Seq
Forward (+)
27607590 .. 27613727
6138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG294100.1

Sequence Viewer

Length: 402 bp
ATGACCGGCCTCCAAGGAGTCTATCCTCCTCGATTGGTGCGACTTCGAGCACCAAATGCCAGCGACGGAGGAACTGAACACAACCGCAATGACAACGGCGCGACCGGCATCAGATTCCGGGTTCTTCTTGCTCTCTCTCCATCTCTACCCATCTTTCTTCTGCATAAAGATAAAATCGCAGAATTGCAGCAGCCATGGCCACCGTGCCGCCCTTGGATCCTCCGAAGATCGACTCAGAAGCCGCTGACACGGAGCCAAAACCTAACCCTAATCCTTCAAATTTTGGTGGAGAAATGTCAGAGAGGGAAAACCAAGAAGCAAATCAATTTGGTTAATAATTGGTGGAGAAATGTCAGAGAGGGAAAACGAAGAAGCAAATCAATTTGGGGAGAGATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.37

Weight (kDa)

11.46

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AciI CCGC 3 cut(s) 85, 208, 242
AclWI GGATC 2 cut(s) 211, 224
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 1 cut(s) 279
AgsI TTSAA 1 cut(s) 278
Alw21I GWGCWC 1 cut(s) 52
AlwI GGATC 2 cut(s) 211, 224
AoxI GGCC 2 cut(s) 7, 197
ApeKI GCWGC 2 cut(s) 187, 190
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 199
BamHI GGATCC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 199, 202
BccI CCATC 3 cut(s) 148, 158, 388
BceAI ACGGC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 119
BisI GCNGC 4 cut(s) 188, 191, 208, 242
BlsI GCNGC 4 cut(s) 189, 192, 209, 243
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 218, 254
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 13, 194, 212
BsaXI ACNNNNNCTCC 1 cut(s) 381
Bse118I RCCGGY 2 cut(s) 5, 104
Bse3DI GCAATG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 13, 194, 212
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 199, 202
Bsh1236I CGCG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 9, 199
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 3 cut(s) 6, 105, 118
BsnI GGCC 2 cut(s) 9, 199
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 216, 227
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 3 cut(s) 85, 208, 242
BspANI GGCC 2 cut(s) 9, 199
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 218, 254
BspPI GGATC 2 cut(s) 211, 224
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 2 cut(s) 5, 104
BssAI RCCGGY 2 cut(s) 5, 104
BssECI CCNNGG 3 cut(s) 13, 194, 212
BssMI GATC 2 cut(s) 216, 227
BssT1I CCWWGG 3 cut(s) 13, 194, 212
Bst4CI ACNGT 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 219, 230
BstMBI GATC 2 cut(s) 216, 227
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 3 cut(s) 56, 105, 196
BstSCI CCNGG 1 cut(s) 117
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 199, 202
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 2 cut(s) 9, 199
BtgI CCRYGG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 2 cut(s) 5, 104
CviAII CATG 1 cut(s) 195
CviJI RGCY 5 cut(s) 9, 193, 199, 241, 255
CviKI_1 RGCY 5 cut(s) 9, 193, 199, 241, 255
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 218, 229
DpnII GATC 2 cut(s) 216, 227
EaeI YGGCCR 1 cut(s) 197
Eco130I CCWWGG 3 cut(s) 13, 194, 212
EcoT14I CCWWGG 3 cut(s) 13, 194, 212
ErhI CCWWGG 3 cut(s) 13, 194, 212
FaeI CATG 1 cut(s) 198
FaiI YATR 2 cut(s) 165, 196
FatI CATG 1 cut(s) 194
Fnu4HI GCNGC 4 cut(s) 188, 191, 208, 242
Fsp4HI GCNGC 4 cut(s) 188, 191, 208, 242
GlaI GCGC 1 cut(s) 100
GluI GCNGC 4 cut(s) 188, 191, 208, 242
HaeIII GGCC 2 cut(s) 9, 199
HapII CCGG 3 cut(s) 6, 105, 118
HhaI GCGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 198
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 3 cut(s) 18, 114, 232
HpaII CCGG 3 cut(s) 6, 105, 118
Hpy188I TCNGA 5 cut(s) 113, 224, 237, 300, 356
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 163, 187
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 105, 196
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 1 cut(s) 198
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 216, 227
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 4 cut(s) 19, 73, 118, 131
Lsp1109I GCAGC 2 cut(s) 199, 202
LweI GCATC 1 cut(s) 117
MalI GATC 2 cut(s) 218, 229
MboI GATC 2 cut(s) 216, 227
MboII GAAGA 4 cut(s) 116, 149, 237, 381
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 52
MlsI TGGCCA 1 cut(s) 199
MluCI AATT 5 cut(s) 182, 279, 325, 337, 381
MluNI TGGCCA 1 cut(s) 199
MlyI GAGTC 2 cut(s) 27, 226
MnlI CCTC 7 cut(s) 20, 36, 39, 62, 230, 296, 352
Mox20I TGGCCA 1 cut(s) 199
MscI TGGCCA 1 cut(s) 199
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 199
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 3 cut(s) 6, 105, 118
MspR9I CCNGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 56, 105, 196
NciI CCSGG 1 cut(s) 119
NcoI CCATGG 1 cut(s) 194
NdeII GATC 2 cut(s) 216, 227
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 2 cut(s) 218, 254
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 4 cut(s) 189, 192, 209, 243
PleI GAGTC 2 cut(s) 26, 226
PpsI GAGTC 2 cut(s) 26, 226
PspN4I GGNNCC 2 cut(s) 218, 254
PsuI RGATCY 1 cut(s) 216
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 4 cut(s) 188, 191, 208, 242
Sau3AI GATC 2 cut(s) 216, 227
SchI GAGTC 2 cut(s) 27, 226
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 52
SetI ASST 1 cut(s) 264
SfaNI GCATC 1 cut(s) 117
Sse9I AATT 5 cut(s) 182, 279, 325, 337, 381
SsiI CCGC 3 cut(s) 85, 208, 242
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 3 cut(s) 13, 194, 212
TaaI ACNGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 31, 46, 230
TasI AATT 5 cut(s) 182, 279, 325, 337, 381
TauI GCSGC 2 cut(s) 210, 244
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseI GCWGC 2 cut(s) 187, 190
TspGWI ACGGA 2 cut(s) 81, 265
XapI RAATTY 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.