Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010974.1

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Reverse (-)

3851 .. 6550

Gene Structure 2700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010974.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggagcagcatttgcgaggttctcagtcgccgatcgacgtcttcaagtaccgccgtcgtcaactggcgcctctgcagaatctgatcgcgccgcagacggaggacggcgtttcggttgccgaaagctacggctccaaagcccagtttgaatatggaaaagaaaatctgcatccaacttctttccctgccaagaacaaatccgagatgtgcgaggctacaagtagctcaggattatgcacccccagcctgaagtcccactttgcctatcaggtcatggcatccagagaaacagcagcagtagcctcatcaccaaagccaaataacgccattgagaccctgattactgtcaccagctggaaggactggtcaccccaagatgatggcattgtggttatcttgccttcaactgagataccttcatcgaaggaagatgtggatgcatctggcactgctttgctgagtcttgtctatggtccatttcagacaactgagataccttcaactgagattgccactgtttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

174

Amino Acids

18.87

Weight (kDa)

5.04

Isoelectric Point (pI)

62.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	67
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	52, 92
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	2 cut(s)	39, 68
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	46, 149, 405, 501
AluBI	AGCT	3 cut(s)	126, 225, 354
AluI	AGCT	3 cut(s)	126, 225, 354
Alw26I	GTCTC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	82
ApeKI	GCWGC	2 cut(s)	7, 293
AspLEI	GCGC	2 cut(s)	70, 91
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	3 cut(s)	300, 340, 360
AvaII	GGWCC	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	19, 305
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	3 cut(s)	39, 121, 145
BcoDI	GTCTC	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	3 cut(s)	8, 92, 294
BlsI	GCNGC	3 cut(s)	9, 93, 295
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	69, 133
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	4 cut(s)	178, 287, 427, 449
BmuI	ACTGGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	226
BsaHI	GRCGYC	2 cut(s)	39, 68
BsaI	GGTCTC	1 cut(s)	326
Bse1I	ACTGG	3 cut(s)	69, 142, 368
BseGI	GGATG	3 cut(s)	169, 278, 442
BseMII	CTCAG	6 cut(s)	38, 240, 399, 449, 480, 495
BseNI	ACTGG	3 cut(s)	69, 142, 368
BseXI	GCAGC	2 cut(s)	19, 305
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	33, 84
BspACI	CCGC	2 cut(s)	52, 92
BspCNI	CTCAG	6 cut(s)	37, 239, 400, 450, 481, 496
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	69, 133
BspMAI	CTGCAG	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	326
BsrI	ACTGG	3 cut(s)	69, 142, 368
BssMI	GATC	2 cut(s)	33, 84
BssNI	GRCGYC	2 cut(s)	39, 68
Bst4CI	ACNGT	2 cut(s)	346, 517
BstACI	GRCGYC	2 cut(s)	39, 68
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstDEI	CTNAG	6 cut(s)	24, 226, 408, 458, 489, 504
BstEII	GGTNACC	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	169, 278, 442
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	70, 91
BstKTI	GATC	2 cut(s)	36, 87
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	33, 84
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 243, 299
BstPI	GGTNACC	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	74
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	19, 305
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	380
BtsCI	GGATG	3 cut(s)	169, 278, 442
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	447, 513
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	2 cut(s)	70, 91
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	9 cut(s)	126, 132, 140, 215, 225, 246, 302, 316, 354
CviKI_1	RGCY	9 cut(s)	126, 132, 140, 215, 225, 246, 302, 316, 354
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	6 cut(s)	24, 226, 408, 458, 489, 504
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	2 cut(s)	35, 86
DpnII	GATC	2 cut(s)	33, 84
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	366
EcoO65I	GGTNACC	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	442
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
FaeI	CATG	1 cut(s)	277
FaiI	YATR	4 cut(s)	153, 235, 275, 471
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	8, 92, 294
FokI	GGATG	3 cut(s)	156, 265, 449
Fsp4HI	GCNGC	3 cut(s)	8, 92, 294
GlaI	GCGC	2 cut(s)	69, 90
GluI	GCNGC	3 cut(s)	8, 92, 294
GsaI	CCCAGC	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	71
HhaI	GCGC	2 cut(s)	70, 91
Hin1I	GRCGYC	2 cut(s)	39, 68
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	2 cut(s)	68, 89
HinP1I	GCGC	2 cut(s)	68, 89
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	79, 460
HphI	GGTGA	3 cut(s)	300, 340, 360
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	3 cut(s)	84, 202, 483
Hpy188III	TCNNGA	2 cut(s)	228, 282
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	2 cut(s)	41, 60
HpyAV	CCTTC	5 cut(s)	352, 411, 418, 426, 507
HpyCH4III	ACNGT	2 cut(s)	346, 517
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	76, 169, 237, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 243, 299
HpyF3I	CTNAG	6 cut(s)	24, 226, 408, 458, 489, 504
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	2 cut(s)	39, 68
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	2 cut(s)	68, 89
KasI	GGCGCC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	33, 84
LmnI	GCTCC	2 cut(s)	4, 137
Lsp1109I	GCAGC	2 cut(s)	19, 305
LweI	GCATC	4 cut(s)	178, 287, 427, 449
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	346, 366
MalI	GATC	2 cut(s)	35, 86
MboI	GATC	2 cut(s)	33, 84
MboII	GAAGA	2 cut(s)	34, 440
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	5 cut(s)	11, 81, 94, 205, 313
Mph1103I	ATGCAT	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	13, 243, 299
NarI	GGCGCC	1 cut(s)	68
NdeII	GATC	2 cut(s)	33, 84
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	69, 133
NmuCI	GTSAC	2 cut(s)	346, 366
NsiI	ATGCAT	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	9, 93, 295
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	468
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	468
PspEI	GGTNACC	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	69, 133
PspPI	GGNCC	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	354
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SatI	GCNGC	3 cut(s)	8, 92, 294
Sau3AI	GATC	2 cut(s)	33, 84
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	1 cut(s)	469
SetI	ASST	8 cut(s)	22, 42, 128, 227, 273, 356, 418, 499
SfaNI	GCATC	4 cut(s)	178, 287, 427, 449
SfcI	CTRYAG	1 cut(s)	74
SfoI	GGCGCC	1 cut(s)	69
SinI	GGWCC	1 cut(s)	473
SsiI	CCGC	2 cut(s)	52, 92
SspDI	GGCGCC	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	346, 517
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	36, 422
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	454, 520
TseFI	GTSAC	2 cut(s)	346, 366
TseI	GCWGC	2 cut(s)	7, 293
Tsp45I	GTSAC	2 cut(s)	346, 366
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	2 cut(s)	454, 520
VpaK11BI	GGWCC	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
ZraI	GACGTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.