Rw1G008160

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000708
Physical Location & Seq
Forward (+)
17505557 .. 17508307
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008160.1

Sequence Viewer

Length: 495 bp
ATGGAGCAGCACTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTGTCGCCGCTTGCGCCCCTGCAGAATCTGATCGCGCCCCAGCCGGGTGACGGCGTTTCGTTTGTGCATGGTAAAGAAAATCTGCGTCCAACTTCTTTCCCTGCCAAGAACAAATCCGAGTCCCACGTCGCCCATCAGGTCATGGCGTCAGCTGTTACAGAAGCAGCAGCAGCAGCGTTAACCTCATCGCCAAAGCCAAATAACACCAGCGAGACCCCAATTACTGTCATCAGCTTCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTCCAACTGAATCACAGGTTATCTTGCCTCCAACTGAATTACCTTCATCGAACGAAGATGTGGATGCATCCAGCACTGCTGGGCTGAGTCTTGTCTATGGTCCTACTACAAGAAGGAGATTGCCACTGTTTACTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

164

Amino Acids

17.75

Weight (kDa)

5.56

Isoelectric Point (pI)

79.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccII CGCG 1 cut(s) 98
AciI CCGC 2 cut(s) 52, 71
AcsI RAATTY 1 cut(s) 480
AcyI GRCGYC 2 cut(s) 39, 209
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 107, 113
AgsI TTSAA 2 cut(s) 46, 301
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 2 cut(s) 215, 297
AluI AGCT 2 cut(s) 215, 297
Alw26I GTCTC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 91
ApeKI GCWGC 5 cut(s) 7, 227, 230, 233, 236
ApoI RAATTY 1 cut(s) 480
AspLEI GCGC 2 cut(s) 79, 100
AspS9I GGNCC 1 cut(s) 443
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 122, 303
AvaII GGWCC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 5 cut(s) 19, 239, 242, 245, 248
BccI CCATC 2 cut(s) 204, 317
BceAI ACGGC 2 cut(s) 39, 130
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 6 cut(s) 8, 71, 228, 231, 234, 237
BlsI GCNGC 6 cut(s) 9, 72, 229, 232, 235, 238
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 443
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 397, 419
BpiI GAAGAC 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 2 cut(s) 39, 209
BsaI GGTCTC 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 113
Bse1I ACTGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 410, 412
BseLI CCNNNNNNNGG 2 cut(s) 107, 113
BseMII CTCAG 2 cut(s) 38, 419
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 5 cut(s) 19, 239, 242, 245, 248
BseYI CCCAGC 2 cut(s) 102, 422
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 107, 113
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 269
Bsp143I GATC 2 cut(s) 33, 93
BspACI CCGC 2 cut(s) 52, 71
BspCNI CTCAG 2 cut(s) 37, 420
BspFNI CGCG 1 cut(s) 98
BspMAI CTGCAG 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 311
BssMI GATC 2 cut(s) 33, 93
BssNI GRCGYC 2 cut(s) 39, 209
Bst4CI ACNGT 3 cut(s) 66, 289, 471
BstACI GRCGYC 2 cut(s) 39, 209
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 24, 428
BstEII GGTNACC 1 cut(s) 309
BstF5I GGATG 2 cut(s) 410, 412
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 2 cut(s) 79, 100
BstKTI GATC 2 cut(s) 36, 96
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 2 cut(s) 33, 93
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 4 cut(s) 13, 76, 233, 236
BstPI GGTNACC 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 5 cut(s) 19, 239, 242, 245, 248
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 410, 412
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 417, 467
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 2 cut(s) 79, 100
Cfr13I GGNCC 1 cut(s) 443
CseI GACGC 2 cut(s) 137, 198
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 131, 205
CviJI RGCY 5 cut(s) 106, 215, 259, 297, 427
CviKI_1 RGCY 5 cut(s) 106, 215, 259, 297, 427
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 2 cut(s) 24, 428
DpnI GATC 2 cut(s) 35, 95
DpnII GATC 2 cut(s) 33, 93
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 309
EcoO65I GGTNACC 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 2 cut(s) 134, 208
FaiI YATR 3 cut(s) 132, 206, 441
FaqI GGGAC 1 cut(s) 169
FatI CATG 2 cut(s) 130, 204
Fnu4HI GCNGC 6 cut(s) 8, 71, 228, 231, 234, 237
FokI GGATG 2 cut(s) 397, 419
Fsp4HI GCNGC 6 cut(s) 8, 71, 228, 231, 234, 237
GlaI GCGC 2 cut(s) 78, 99
GluI GCNGC 6 cut(s) 8, 71, 228, 231, 234, 237
GsaI CCCAGC 2 cut(s) 106, 426
HapII CCGG 1 cut(s) 107
HgaI GACGC 2 cut(s) 137, 198
HhaI GCGC 2 cut(s) 79, 100
Hin1I GRCGYC 2 cut(s) 39, 209
Hin1II CATG 2 cut(s) 134, 208
Hin6I GCGC 2 cut(s) 77, 98
HinP1I GCGC 2 cut(s) 77, 98
HincII GTYRAC 2 cut(s) 62, 243
HindII GTYRAC 2 cut(s) 62, 243
HinfI GANTC 4 cut(s) 88, 182, 353, 430
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 122, 303
Hpy166II GTNNAC 3 cut(s) 62, 243, 474
Hpy188I TCNGA 2 cut(s) 93, 181
Hpy8I GTNNAC 3 cut(s) 62, 243, 474
Hpy99I CGWCG 3 cut(s) 41, 60, 194
HpyAV CCTTC 2 cut(s) 396, 450
HpyCH4III ACNGT 3 cut(s) 66, 289, 471
HpyCH4IV ACGT 2 cut(s) 39, 189
HpyCH4V TGCA 3 cut(s) 85, 130, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 76, 233, 236
HpyF3I CTNAG 2 cut(s) 24, 428
HpySE526I ACGT 2 cut(s) 39, 189
Hsp92I GRCGYC 2 cut(s) 39, 209
Hsp92II CATG 2 cut(s) 134, 208
HspAI GCGC 2 cut(s) 77, 98
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 2 cut(s) 33, 93
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 5 cut(s) 19, 239, 242, 245, 248
LweI GCATC 2 cut(s) 397, 419
MaeII ACGT 2 cut(s) 39, 189
MaeIII GTNAC 3 cut(s) 110, 217, 309
MalI GATC 2 cut(s) 35, 95
MboI GATC 2 cut(s) 33, 93
MboII GAAGA 2 cut(s) 34, 410
MluCI AATT 3 cut(s) 282, 380, 480
MlyI GAGTC 2 cut(s) 191, 439
MmeI TCCRAC 3 cut(s) 176, 371, 398
MnlI CCTC 5 cut(s) 11, 256, 325, 354, 381
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 13, 76, 233, 236
NciI CCSGG 1 cut(s) 108
NdeII GATC 2 cut(s) 33, 93
NlaIII CATG 2 cut(s) 134, 208
NmuCI GTSAC 2 cut(s) 110, 309
NsiI ATGCAT 1 cut(s) 412
PfeI GAWTC 2 cut(s) 88, 353
PkrI GCNGC 6 cut(s) 9, 72, 229, 232, 235, 238
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 2 cut(s) 190, 438
PpsI GAGTC 2 cut(s) 190, 438
PspEI GGTNACC 1 cut(s) 309
PspFI CCCAGC 2 cut(s) 102, 422
PspPI GGNCC 1 cut(s) 443
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 91
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 6 cut(s) 8, 71, 228, 231, 234, 237
Sau3AI GATC 2 cut(s) 33, 93
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 2 cut(s) 191, 439
ScrFI CCNGG 1 cut(s) 108
SfaNI GCATC 2 cut(s) 397, 419
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 443
Sse9I AATT 3 cut(s) 282, 380, 480
SsiI CCGC 2 cut(s) 52, 71
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 3 cut(s) 66, 289, 471
TaiI ACGT 2 cut(s) 42, 192
TaqI TCGA 2 cut(s) 36, 392
TasI AATT 3 cut(s) 282, 380, 480
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 2 cut(s) 88, 353
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 2 cut(s) 424, 474
TseFI GTSAC 2 cut(s) 110, 309
TseI GCWGC 5 cut(s) 7, 227, 230, 233, 236
Tsp45I GTSAC 2 cut(s) 110, 309
TspDTI ATGAA 1 cut(s) 378
TspRI CASTG 2 cut(s) 424, 474
VpaK11BI GGWCC 1 cut(s) 443
XapI RAATTY 1 cut(s) 480
ZraI GACGTC 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.