Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Reverse (-)

53384450 .. 53390350

Gene Structure 5901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGCAGCACTTGCGACGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCATCGTCAACTGTCGCCGCTCGCGCCTCTGCAGAATCTGATGGCGCCGCAGACGGAGGACGGCGTTTCGGTTGCCGAAAGCTACGGCTCCAAAGCCCAGTTTGTATATGGAAAAGAAAATCTGCATCCAACCTCTTCCCCTGCCAAGAACAAATCTGAGGCACAGATGTGCGAGGCTACAGGTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGTAGCAGCATTAGCCTCATCGCCAAAGCCAAATAACACCATTGAGACCCCGATTACCGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTCCAACTGAAACACCTTCATCGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTACAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

183

Amino Acids

19.63

Weight (kDa)

5.59

Isoelectric Point (pI)

70.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	73
AccII	CGCG	1 cut(s)	77
AciI	CCGC	3 cut(s)	52, 71, 101
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	2 cut(s)	39, 98
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	220
AluBI	AGCT	3 cut(s)	135, 240, 378
AluI	AGCT	3 cut(s)	135, 240, 378
Alw26I	GTCTC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	91
ApeKI	GCWGC	5 cut(s)	7, 305, 308, 317, 378
ApoI	RAATTY	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	79, 100
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	5 cut(s)	19, 317, 320, 329, 365
BccI	CCATC	3 cut(s)	63, 88, 398
BceAI	ACGGC	2 cut(s)	130, 154
BcoDI	GTCTC	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	83, 231
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	7 cut(s)	8, 71, 101, 306, 309, 318, 379
BlsI	GCNGC	7 cut(s)	9, 72, 102, 307, 310, 319, 380
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	99, 142
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	4 cut(s)	187, 302, 451, 473
BmuI	ACTGGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	241
BsaHI	GRCGYC	2 cut(s)	39, 98
BsaI	GGTCTC	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	151, 392
BseGI	GGATG	4 cut(s)	178, 293, 464, 466
BseMII	CTCAG	4 cut(s)	38, 201, 255, 473
BseNI	ACTGG	2 cut(s)	151, 392
BseXI	GCAGC	5 cut(s)	19, 317, 320, 329, 365
BseYI	CCCAGC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	3 cut(s)	52, 71, 101
BspCNI	CTCAG	4 cut(s)	37, 202, 254, 474
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	99, 142
BspMAI	CTGCAG	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	151, 392
BssMI	GATC	1 cut(s)	33
BssNI	GRCGYC	2 cut(s)	39, 98
Bst4CI	ACNGT	3 cut(s)	66, 370, 525
Bst6I	CTCTTC	1 cut(s)	193
BstACI	GRCGYC	2 cut(s)	39, 98
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	4 cut(s)	24, 210, 241, 482
BstEII	GGTNACC	1 cut(s)	390
BstF5I	GGATG	4 cut(s)	178, 293, 464, 466
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	79, 100
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	33
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 76, 258, 314, 317, 323
BstPI	GGTNACC	1 cut(s)	390
BstSFI	CTRYAG	2 cut(s)	83, 231
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	5 cut(s)	19, 317, 320, 329, 365
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	404
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	4 cut(s)	178, 293, 464, 466
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	471, 521
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	2 cut(s)	79, 100
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	9 cut(s)	135, 141, 149, 230, 240, 261, 326, 340, 378
CviKI_1	RGCY	9 cut(s)	135, 141, 149, 230, 240, 261, 326, 340, 378
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	4 cut(s)	24, 210, 241, 482
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	390
EcoO65I	GGTNACC	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	466
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
FaeI	CATG	1 cut(s)	292
FaiI	YATR	5 cut(s)	160, 162, 250, 290, 495
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	7 cut(s)	8, 71, 101, 306, 309, 318, 379
FokI	GGATG	4 cut(s)	165, 280, 451, 473
Fsp4HI	GCNGC	7 cut(s)	8, 71, 101, 306, 309, 318, 379
GlaI	GCGC	2 cut(s)	78, 99
GluI	GCNGC	7 cut(s)	8, 71, 101, 306, 309, 318, 379
GsaI	CCCAGC	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	101
HapII	CCGG	1 cut(s)	468
HhaI	GCGC	2 cut(s)	79, 100
Hin1I	GRCGYC	2 cut(s)	39, 98
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	2 cut(s)	77, 98
HinP1I	GCGC	2 cut(s)	77, 98
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	88, 484
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	93, 211
Hpy188III	TCNNGA	2 cut(s)	243, 297
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	2 cut(s)	21, 41
HpyAV	CCTTC	3 cut(s)	442, 450, 510
HpyCH4III	ACNGT	3 cut(s)	66, 370, 525
HpyCH4IV	ACGT	2 cut(s)	19, 39
HpyCH4V	TGCA	5 cut(s)	85, 178, 252, 381, 464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 76, 258, 314, 317, 323
HpyF3I	CTNAG	4 cut(s)	24, 210, 241, 482
HpySE526I	ACGT	2 cut(s)	19, 39
Hsp92I	GRCGYC	2 cut(s)	39, 98
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	2 cut(s)	77, 98
KasI	GGCGCC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	4, 146
Lsp1109I	GCAGC	5 cut(s)	19, 317, 320, 329, 365
LweI	GCATC	4 cut(s)	187, 302, 451, 473
MaeII	ACGT	2 cut(s)	19, 39
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	1 cut(s)	35
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	34, 180, 464
MluCI	AATT	1 cut(s)	534
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	2 cut(s)	206, 452
MnlI	CCTC	8 cut(s)	90, 103, 196, 205, 220, 337, 406, 435
Mph1103I	ATGCAT	1 cut(s)	466
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	1 cut(s)	468
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	6 cut(s)	13, 76, 258, 314, 317, 323
NarI	GGCGCC	1 cut(s)	98
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	99, 142
NmuCI	GTSAC	1 cut(s)	390
NsiI	ATGCAT	1 cut(s)	466
OliI	CACNNNNGTG	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	7 cut(s)	9, 72, 102, 307, 310, 319, 380
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	492
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	492
PspEI	GGTNACC	1 cut(s)	390
PspFI	CCCAGC	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	99, 142
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	378
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	220
SatI	GCNGC	7 cut(s)	8, 71, 101, 306, 309, 318, 379
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	493
SfaNI	GCATC	4 cut(s)	187, 302, 451, 473
SfcI	CTRYAG	2 cut(s)	83, 231
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	1 cut(s)	534
SsiI	CCGC	3 cut(s)	52, 71, 101
SspDI	GGCGCC	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	66, 370, 525
TaiI	ACGT	2 cut(s)	22, 42
TaqI	TCGA	2 cut(s)	36, 446
TasI	AATT	1 cut(s)	534
TauI	GCSGC	2 cut(s)	73, 103
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	2 cut(s)	478, 528
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	5 cut(s)	7, 305, 308, 317, 378
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	478, 528
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	1 cut(s)	534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.