Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Reverse (-)

48156469 .. 48159209

Gene Structure 2741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG349900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAACAGCACTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTGTCGCCGCTCGCGCCCCTGCAGAATCTGATCGTGCCGCAGACGGAGGACGGCGTTTCGGTTGCCGGAAGCTACGGCTCCAAAGGCCAGTTTGTGCATGATAAAGAAAATCTGCGTCCAACTTCTTTCCCTGCCAAGAACAAATCCAAGGCACAGATGTGCAAGTCTACAACTAGCTCAGGATTATGCACACCCAGCCCAAAGTCCCATGTCGCCCATCAGGTCATGGCGTCAGCTGTTACAGAAGCAGCAGCAGCAGCGTTAACCTCATCGCCAAAGCCAAATAACACCAGCGAGACCCCAATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTCCAACTGAATCACAGGTTATCTTGCCTCCAACTGAATTACCTTCATCAAACGAAGATGTGGATGCATCCAGCACTGCTGGGCTGAGTCTTGTCTATGGTCCTACTACAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

192

Amino Acids

20.58

Weight (kDa)

6.43

Isoelectric Point (pI)

75.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	230
AccII	CGCG	1 cut(s)	77
AciI	CCGC	3 cut(s)	52, 71, 101
AcsI	RAATTY	1 cut(s)	564
AcyI	GRCGYC	2 cut(s)	39, 293
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	220
AluBI	AGCT	4 cut(s)	135, 240, 299, 381
AluI	AGCT	4 cut(s)	135, 240, 299, 381
Alw26I	GTCTC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	5 cut(s)	311, 314, 317, 320, 381
ApoI	RAATTY	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	5 cut(s)	323, 326, 329, 332, 368
BccI	CCATC	2 cut(s)	288, 401
BceAI	ACGGC	3 cut(s)	39, 130, 154
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	83
BisI	GCNGC	7 cut(s)	71, 101, 312, 315, 318, 321, 382
BlsI	GCNGC	7 cut(s)	72, 102, 313, 316, 319, 322, 383
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	2 cut(s)	481, 503
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	241
BsaHI	GRCGYC	2 cut(s)	39, 293
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	151, 395
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	494, 496
BseMII	CTCAG	3 cut(s)	38, 255, 503
BseNI	ACTGG	2 cut(s)	151, 395
BseXI	GCAGC	5 cut(s)	323, 326, 329, 332, 368
BseYI	CCCAGC	2 cut(s)	257, 506
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	33, 93
BspACI	CCGC	3 cut(s)	52, 71, 101
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	3 cut(s)	37, 254, 504
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	151, 395
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	33, 93
BssNI	GRCGYC	2 cut(s)	39, 293
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	66, 373, 555
BstACI	GRCGYC	2 cut(s)	39, 293
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	24, 241, 512
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	494, 496
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	2 cut(s)	36, 96
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	2 cut(s)	33, 93
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 147, 258, 317, 320
BstPI	GGTNACC	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	83
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	5 cut(s)	323, 326, 329, 332, 368
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	494, 496
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	501, 551
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	527
CseI	GACGC	2 cut(s)	167, 282
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	3 cut(s)	161, 272, 289
CviJI	RGCY	9 cut(s)	135, 141, 150, 240, 261, 299, 343, 381, 511
CviKI_1	RGCY	9 cut(s)	135, 141, 150, 240, 261, 299, 343, 381, 511
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	24, 241, 512
DpnI	GATC	2 cut(s)	35, 95
DpnII	GATC	2 cut(s)	33, 93
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	527
Eco91I	GGTNACC	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	164, 275, 292
FaiI	YATR	5 cut(s)	162, 250, 273, 290, 525
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	3 cut(s)	160, 271, 288
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	7 cut(s)	71, 101, 312, 315, 318, 321, 382
FokI	GGATG	2 cut(s)	481, 503
Fsp4HI	GCNGC	7 cut(s)	71, 101, 312, 315, 318, 321, 382
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	7 cut(s)	71, 101, 312, 315, 318, 321, 382
GsaI	CCCAGC	2 cut(s)	261, 510
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	2 cut(s)	167, 282
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	2 cut(s)	39, 293
Hin1II	CATG	3 cut(s)	164, 275, 292
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	2 cut(s)	62, 327
HindII	GTYRAC	2 cut(s)	62, 327
HinfI	GANTC	3 cut(s)	88, 437, 514
HpaI	GTTAAC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	3 cut(s)	62, 231, 327
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	3 cut(s)	62, 231, 327
Hpy99I	CGWCG	2 cut(s)	41, 60
HpyAV	CCTTC	2 cut(s)	480, 534
HpyCH4III	ACNGT	3 cut(s)	66, 373, 555
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	85, 160, 225, 252, 384, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 147, 258, 317, 320
HpyF3I	CTNAG	3 cut(s)	24, 241, 512
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	2 cut(s)	39, 293
Hsp92II	CATG	3 cut(s)	164, 275, 292
HspAI	GCGC	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	33, 93
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	5 cut(s)	323, 326, 329, 332, 368
LweI	GCATC	2 cut(s)	481, 503
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	301, 393
MalI	GATC	2 cut(s)	35, 95
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	2 cut(s)	33, 93
MboII	GAAGA	2 cut(s)	34, 494
MluCI	AATT	3 cut(s)	366, 464, 564
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	3 cut(s)	206, 455, 482
MnlI	CCTC	6 cut(s)	11, 103, 340, 409, 438, 465
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	2 cut(s)	299, 381
MspI	CCGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	5 cut(s)	76, 147, 258, 317, 320
NdeII	GATC	2 cut(s)	33, 93
NlaIII	CATG	3 cut(s)	164, 275, 292
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	496
OliI	CACNNNNGTG	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	88, 437
PkrI	GCNGC	7 cut(s)	72, 102, 313, 316, 319, 322, 383
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
PspEI	GGTNACC	1 cut(s)	393
PspFI	CCCAGC	2 cut(s)	257, 506
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	2 cut(s)	299, 381
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	7 cut(s)	71, 101, 312, 315, 318, 321, 382
Sau3AI	GATC	2 cut(s)	33, 93
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	481, 503
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	366, 464, 564
SsiI	CCGC	3 cut(s)	52, 71, 101
SspMI	CTAG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	66, 373, 555
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	366, 464, 564
TauI	GCSGC	2 cut(s)	73, 103
TfiI	GAWTC	2 cut(s)	88, 437
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	2 cut(s)	508, 558
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	5 cut(s)	311, 314, 317, 320, 381
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	508, 558
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	564
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.