FvH4_5g30620

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000708
Physical Location & Seq
Reverse (-)
21498476 .. 21502553
4078 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30620.t4

Sequence Viewer

Length: 807 bp
ATGGAGAATCTTCACGGCAACTCGCGAGTTCCGAAATTGAGTCCGCAGCACTTGATCAAACGAGGAAGCTTCGAGAAGGAGGACGCGATCGACTCGCCGCTCCTCCGGTACCTGCGCGGAGGCTCTCAGTCGCCGGTCGGCTGCTTCAAGCAGCGGCGCCACCCGCTCTCGCCGGTCGAGAATCTGATGGCGGCGGCGGCGAGGTCTCCGCCGGTGAGAGCGGTGCCGAGGGAGGAGGTTCTGGTGATGGACGGCGTTTTGGTCGCCACCGAAGGAAAGAGGAGTACGTTGAGGTCCGGTGGTTCTTCTGCTTCGCTTTCATCTGCTTCTTCGGATTCTTCGGGGAAGAGTATCTACAAAGGCCAGTTAGTACTTGGAAAAGAAAATATGCGTCCAACTCGTTTTCCTGGCAAGAACAAATCTGAGTTGTGCAAGTCTTCACCTAGTTCAGGATCATGTACTCCCAGCCCGAAGTCCCGCCTTGTCTATCAGATCATGGCATCAGCTGTTACTGAAGCAGCAGCAGCCTTGTCTCCAAAACTGAGTAGCACCAGCAAGACTCTGAATAGCGCCAGCAAGACTCTGCATAGCACCAGCAAGACTCTGTATAGCACCAGCATGACCCCCATTACTGTTATCTGCTGCGGAGACTGGTCACCCCAAGATGATGGCATTGAGGTTGTCTTGCCTTCTTCAACTGAAGAACCTCCATCAAAGGCAGATGTAGATGAGCACATCACTGCTTCTCTCTATGGTCCTACTACAAGAAGGAGATTGCCACTGTTTGGTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

269

Amino Acids

28.61

Weight (kDa)

9.33

Isoelectric Point (pI)

74.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 3 cut(s) 108, 156, 223
AccB7I CCANNNNNTGG 1 cut(s) 785
AccBSI CCGCTC 3 cut(s) 100, 166, 221
AccII CGCG 3 cut(s) 25, 86, 117
AclWI GGATC 1 cut(s) 460
AcsI RAATTY 1 cut(s) 792
AcuI CTGAAG 2 cut(s) 534, 720
AcyI GRCGYC 1 cut(s) 157
AfaI GTAC 4 cut(s) 110, 286, 372, 460
AfiI CCNNNNNNNGG 2 cut(s) 449, 785
AgsI TTSAA 2 cut(s) 148, 696
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 2 cut(s) 69, 506
AluI AGCT 2 cut(s) 69, 506
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 3 cut(s) 210, 537, 642
AlwI GGATC 1 cut(s) 460
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 7 cut(s) 46, 141, 151, 518, 521, 524, 642
ApoI RAATTY 1 cut(s) 792
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 3 cut(s) 117, 159, 572
AspS9I GGNCC 2 cut(s) 294, 755
AsuHPI GGTGA 5 cut(s) 226, 256, 432, 648, 800
AvaII GGWCC 2 cut(s) 294, 755
BanI GGYRCC 3 cut(s) 108, 156, 223
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 7 cut(s) 58, 128, 163, 530, 533, 536, 629
BccI CCATC 4 cut(s) 181, 241, 662, 718
BceAI ACGGC 2 cut(s) 31, 268
BciT130I CCWGG 1 cut(s) 408
BclI TGATCA 1 cut(s) 54
BcoDI GTCTC 3 cut(s) 210, 537, 642
BfaI CTAG 1 cut(s) 444
BfoI RGCGCY 2 cut(s) 160, 573
BfuAI ACCTGC 1 cut(s) 120
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 2 cut(s) 294, 755
BmgT120I GGNCC 2 cut(s) 294, 755
BmiI GGNNCC 3 cut(s) 110, 158, 225
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 227
BsaWI WCCGGW 2 cut(s) 105, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 785
Bse118I RCCGGY 3 cut(s) 133, 172, 211
Bse1I ACTGG 2 cut(s) 364, 656
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 449, 785
BseMII CTCAG 3 cut(s) 140, 414, 533
BseNI ACTGG 2 cut(s) 364, 656
BseRI GAGGAG 3 cut(s) 92, 248, 295
BseXI GCAGC 7 cut(s) 58, 128, 163, 530, 533, 536, 629
BseYI CCCAGC 1 cut(s) 464
Bsh1236I CGCG 3 cut(s) 25, 86, 117
Bsh1285I CGRYCG 3 cut(s) 90, 138, 177
BshFI GGCC 1 cut(s) 363
BshNI GGYRCC 3 cut(s) 108, 156, 223
BsiEI CGRYCG 3 cut(s) 90, 138, 177
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 5 cut(s) 106, 134, 173, 212, 297
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 2 cut(s) 449, 785
BsmAI GTCTC 3 cut(s) 210, 537, 642
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 1 cut(s) 363
Bso31I GGTCTC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 4 cut(s) 54, 87, 452, 492
Bsp68I TCGCGA 1 cut(s) 25
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 3 cut(s) 139, 415, 534
BspFNI CGCG 3 cut(s) 25, 86, 117
BspLI GGNNCC 3 cut(s) 110, 158, 225
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 460
BspT107I GGYRCC 3 cut(s) 108, 156, 223
BspTNI GGTCTC 1 cut(s) 210
BsrBI CCGCTC 3 cut(s) 100, 166, 221
BsrFI RCCGGY 3 cut(s) 133, 172, 211
BsrI ACTGG 2 cut(s) 364, 656
BssAI RCCGGY 3 cut(s) 133, 172, 211
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 4 cut(s) 54, 87, 452, 492
BssNI GRCGYC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 634, 783
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 574
BstDEI CTNAG 3 cut(s) 126, 423, 542
BstEII GGTNACC 1 cut(s) 654
BstENI CCTNNNNNAGG 1 cut(s) 447
BstFNI CGCG 3 cut(s) 25, 86, 117
BstH2I RGCGCY 2 cut(s) 160, 573
BstHHI GCGC 3 cut(s) 117, 159, 572
BstKTI GATC 4 cut(s) 57, 90, 455, 495
BstMAI GTCTC 3 cut(s) 210, 537, 642
BstMBI GATC 4 cut(s) 54, 87, 452, 492
BstMCI CGRYCG 3 cut(s) 90, 138, 177
BstMWI GCNNNNNNNGC 3 cut(s) 163, 197, 524
BstNI CCWGG 1 cut(s) 408
BstPI GGTNACC 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 406
BstUI CGCG 3 cut(s) 25, 86, 117
BstV1I GCAGC 7 cut(s) 58, 128, 163, 530, 533, 536, 629
BstV2I GAAGAC 1 cut(s) 429
BstXI CCANNNNNNTGG 1 cut(s) 668
BsuRI GGCC 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 2 cut(s) 738, 779
BtuMI TCGCGA 1 cut(s) 25
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 574
CfoI GCGC 3 cut(s) 117, 159, 572
Cfr10I RCCGGY 3 cut(s) 133, 172, 211
Cfr13I GGNCC 2 cut(s) 294, 755
CseI GACGC 2 cut(s) 92, 380
Csp6I GTAC 4 cut(s) 109, 285, 371, 459
CviAII CATG 3 cut(s) 456, 496, 619
CviJI RGCY 7 cut(s) 69, 123, 141, 363, 468, 506, 527
CviKI_1 RGCY 7 cut(s) 69, 123, 141, 363, 468, 506, 527
CviQI GTAC 4 cut(s) 109, 285, 371, 459
DdeI CTNAG 3 cut(s) 126, 423, 542
DinI GGCGCC 1 cut(s) 158
DpnI GATC 4 cut(s) 56, 89, 454, 494
DpnII GATC 4 cut(s) 54, 87, 452, 492
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EciI GGCGGA 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 294, 755
Eco57I CTGAAG 2 cut(s) 534, 720
Eco91I GGTNACC 1 cut(s) 654
EcoNI CCTNNNNNAGG 1 cut(s) 447
EcoO65I GGTNACC 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 406
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
FaeI CATG 3 cut(s) 459, 499, 622
FaiI YATR 7 cut(s) 389, 457, 497, 588, 609, 620, 753
FaqI GGGAC 1 cut(s) 460
FatI CATG 3 cut(s) 455, 495, 618
FauI CCCGC 2 cut(s) 171, 485
FbaI TGATCA 1 cut(s) 54
FspBI CTAG 1 cut(s) 444
GlaI GCGC 3 cut(s) 116, 158, 571
GsaI CCCAGC 1 cut(s) 468
HaeII RGCGCY 2 cut(s) 160, 573
HaeIII GGCC 1 cut(s) 363
HapII CCGG 5 cut(s) 106, 134, 173, 212, 297
HgaI GACGC 2 cut(s) 92, 380
HhaI GCGC 3 cut(s) 117, 159, 572
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 3 cut(s) 459, 499, 622
Hin6I GCGC 3 cut(s) 115, 157, 570
HinP1I GCGC 3 cut(s) 115, 157, 570
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 8 cut(s) 7, 40, 92, 181, 335, 559, 580, 601
HpaII CCGG 5 cut(s) 106, 134, 173, 212, 297
HphI GGTGA 5 cut(s) 226, 256, 432, 648, 800
Hpy188I TCNGA 6 cut(s) 33, 186, 334, 424, 492, 564
Hpy188III TCNNGA 4 cut(s) 24, 73, 178, 450
HpyAV CCTTC 4 cut(s) 70, 266, 699, 762
HpyCH4III ACNGT 2 cut(s) 634, 783
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 2 cut(s) 432, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 197, 524
HpyF3I CTNAG 3 cut(s) 126, 423, 542
HpySE526I ACGT 1 cut(s) 287
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 3 cut(s) 459, 499, 622
HspAI GCGC 3 cut(s) 115, 157, 570
KasI GGCGCC 1 cut(s) 156
KpnI GGTACC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 4 cut(s) 54, 87, 452, 492
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 7 cut(s) 58, 128, 163, 530, 533, 536, 629
LweI GCATC 1 cut(s) 509
MaeI CTAG 1 cut(s) 444
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 508, 654
MalI GATC 4 cut(s) 56, 89, 454, 494
MbiI CCGCTC 3 cut(s) 100, 166, 221
MboI GATC 4 cut(s) 54, 87, 452, 492
MboII GAAGA 7 cut(s) 297, 321, 330, 358, 429, 684, 713
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 2 cut(s) 35, 792
Mly113I GGCGCC 1 cut(s) 157
MlyI GAGTC 5 cut(s) 49, 86, 553, 574, 595
MmeI TCCRAC 1 cut(s) 419
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 2 cut(s) 154, 506
MspI CCGG 5 cut(s) 106, 134, 173, 212, 297
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 3 cut(s) 25, 86, 117
MwoI GCNNNNNNNGC 3 cut(s) 163, 197, 524
NarI GGCGCC 1 cut(s) 157
NdeII GATC 4 cut(s) 54, 87, 452, 492
NlaIII CATG 3 cut(s) 459, 499, 622
NlaIV GGNNCC 3 cut(s) 110, 158, 225
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 654
NruI TCGCGA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PfeI GAWTC 3 cut(s) 7, 181, 335
PflMI CCANNNNNTGG 1 cut(s) 785
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 5 cut(s) 48, 86, 553, 574, 595
PluTI GGCGCC 1 cut(s) 160
PpsI GAGTC 5 cut(s) 48, 86, 553, 574, 595
Psp6I CCWGG 1 cut(s) 406
PspEI GGTNACC 1 cut(s) 654
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 110, 158, 225
PspPI GGNCC 2 cut(s) 294, 755
PvuI CGATCG 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 506
RruI TCGCGA 1 cut(s) 25
RsaI GTAC 4 cut(s) 110, 286, 372, 460
RsaNI GTAC 4 cut(s) 109, 285, 371, 459
RseI CAYNNNNRTG 1 cut(s) 617
Sau3AI GATC 4 cut(s) 54, 87, 452, 492
Sau96I GGNCC 2 cut(s) 294, 755
ScaI AGTACT 1 cut(s) 372
SchI GAGTC 5 cut(s) 49, 86, 553, 574, 595
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 1 cut(s) 509
SfoI GGCGCC 1 cut(s) 158
SgrAI CRCCGGYG 1 cut(s) 211
SinI GGWCC 2 cut(s) 294, 755
SmiMI CAYNNNNRTG 1 cut(s) 617
Sse9I AATT 2 cut(s) 35, 792
SspDI GGCGCC 1 cut(s) 156
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 634, 783
TaiI ACGT 1 cut(s) 290
TaqI TCGA 3 cut(s) 72, 90, 177
TasI AATT 2 cut(s) 35, 792
TatI WGTACW 2 cut(s) 370, 458
TauI GCSGC 5 cut(s) 100, 157, 194, 197, 200
TfiI GAWTC 3 cut(s) 7, 181, 335
TscAI CASTG 2 cut(s) 745, 786
TseFI GTSAC 1 cut(s) 654
TseI GCWGC 7 cut(s) 46, 141, 151, 518, 521, 524, 642
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 2 cut(s) 745, 786
Van91I CCANNNNNTGG 1 cut(s) 785
VpaK11BI GGWCC 2 cut(s) 294, 755
XagI CCTNNNNNAGG 1 cut(s) 447
XapI RAATTY 1 cut(s) 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XspI CTAG 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.