Rh7AG373300

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000708
Physical Location & Seq
Forward (+)
48207209 .. 48213347
6139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG373300.1

Sequence Viewer

Length: 1041 bp
ATGCAGATGGACCTTGGGCTCTTCGACGATGGCGGAGATGAGATCAGAGAGGAGATCGAAGAAGAGGAGCGACTCCGTCGTCCTCCTAATCTGCCCCTCTCCTCCACTGGGTTCACCTCACCGCCAGCACTTTTCTCTCTCTCCATAGAGCCTTCCCGCCGGCCCACCACCGAGTCCAACTCGACGGCCGCCGCAGCCCATGTCCTCCACCGACCTCCAAGAGGACATGGGCAACAATTCCATCTTTTTGCAATGAACGTTCCTTCGTCTACGTTCTTCATCCGAAACCTAATTCCGTCTTCTGCAATTGCGATGGAGAACCTTCACGGAAACTCGAGAGTTCCGAAATTGAGCCCGCAGCACTTGATGAAAGGAGGAAGCTTTGAGAATGCGGACCTCGACTCGCCGCTCCTCAGGTACCTGCGAGGCTCTCAGTCGCCGGTCGACGGCTTCAAGCAGCGGCGCCACCCGCTCTCTCCGGTGGAGAATCTGATGGCGGCGGTGAGGTCTTCACCGGTGAGAACGGTGCCGAGGGAGGAGGTCCTGGTGATGGACGGCGTTTTGGTCACCAATGGAAAGAGGAGTTCGAGGTCGGGTGGTTCTGGTTCGCCTTCATCTACTTCTTCGGATTCTTCGGGGAAGACTCTCTACAAAGGCCAGTTTGTACTTGGAAAAGAAAGTTTGCGTCCAACTCGTTTTCCTGGCAAGAACAAATCTGAGTTGTGCAAGTCTACACCTAGATCAGGATCATGCACACCCAGCTCAAAGTCCCGCCTTGTCTATCAGATCATGGCATCAGCTGTTACTGAAGCAGCAGCAGCAGCCTTGTCTCCAAAACTGAATAGGACCAGCAAGACCCTCATTACTGTTATCTGCTGCAGAGACTGGTCACCCCAAGATGATGGCATTGAGGTTGTCTTGCCTTCTTCAACTGAAAAACCTCCATCAAAGGCAGATGTAGAGGAGTACATCACTGCTTCTCTCTATGGTCCTACTACAAGAAGGAGACTGTCAGTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

346

Amino Acids

37.65

Weight (kDa)

9.22

Isoelectric Point (pI)

78.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 429
Acc65I GGTACC 1 cut(s) 417
AccB1I GGYRCC 3 cut(s) 417, 462, 526
AccBSI CCGCTC 2 cut(s) 409, 472
AccI GTMKAC 3 cut(s) 269, 444, 731
AclI AACGTT 1 cut(s) 258
AclWI GGATC 1 cut(s) 754
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 1026
AcuI CTGAAG 1 cut(s) 828
AcyI GRCGYC 1 cut(s) 463
AfaI GTAC 3 cut(s) 419, 666, 968
AfiI CCNNNNNNNGG 5 cut(s) 108, 221, 446, 550, 743
AgeI ACCGGT 1 cut(s) 514
AgsI TTSAA 2 cut(s) 454, 930
AjnI CCWGG 2 cut(s) 543, 700
AluBI AGCT 3 cut(s) 381, 762, 800
AluI AGCT 3 cut(s) 381, 762, 800
Alw26I GTCTC 3 cut(s) 834, 876, 1000
AlwI GGATC 1 cut(s) 754
AlwNI CAGNNNCTG 1 cut(s) 885
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 3 cut(s) 161, 186, 655
ApeKI GCWGC 8 cut(s) 194, 358, 457, 812, 815, 818, 821, 876
ApoI RAATTY 1 cut(s) 1026
AsiGI ACCGGT 1 cut(s) 514
Asp718I GGTACC 1 cut(s) 417
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 6 cut(s) 10, 162, 394, 541, 846, 989
AsuHPI GGTGA 8 cut(s) 106, 111, 504, 514, 529, 559, 559, 882
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 5 cut(s) 10, 394, 541, 846, 989
AxyI CCTNAGG 1 cut(s) 413
BanI GGYRCC 3 cut(s) 417, 462, 526
BanII GRGCYC 2 cut(s) 21, 356
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BbsI GAAGAC 3 cut(s) 291, 501, 647
BbvI GCAGC 8 cut(s) 206, 370, 469, 824, 827, 830, 833, 863
BccI CCATC 7 cut(s) 23, 249, 307, 487, 544, 896, 952
BceAI ACGGC 3 cut(s) 201, 463, 571
BciT130I CCWGG 2 cut(s) 545, 702
BcoDI GTCTC 3 cut(s) 834, 876, 1000
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 1 cut(s) 877
BfoI RGCGCY 1 cut(s) 466
BfuAI ACCTGC 1 cut(s) 429
Bme1390I CCNGG 2 cut(s) 545, 702
Bme18I GGWCC 5 cut(s) 10, 394, 541, 846, 989
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 6 cut(s) 10, 162, 394, 541, 846, 989
BmiI GGNNCC 3 cut(s) 419, 464, 528
BmrFI CCNGG 2 cut(s) 545, 702
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 803
BmuI ACTGGG 1 cut(s) 117
BpiI GAAGAC 3 cut(s) 291, 501, 647
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BsaBI GATNNNNATC 1 cut(s) 745
BsaHI GRCGYC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 13, 530
BsaWI WCCGGW 2 cut(s) 478, 514
Bsc4I CCNNNNNNNGG 5 cut(s) 108, 221, 446, 550, 743
Bse118I RCCGGY 3 cut(s) 159, 439, 514
Bse1I ACTGG 3 cut(s) 112, 658, 890
Bse21I CCTNAGG 1 cut(s) 413
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 745
BseBI CCWGG 2 cut(s) 545, 702
BseDI CCNNGG 2 cut(s) 13, 530
BseGI GGATG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 745
BseLI CCNNNNNNNGG 5 cut(s) 108, 221, 446, 550, 743
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 3 cut(s) 427, 446, 708
BseNI ACTGG 3 cut(s) 112, 658, 890
BseRI GAGGAG 7 cut(s) 65, 80, 91, 401, 551, 595, 977
BseX3I CGGCCG 1 cut(s) 186
BseXI GCAGC 8 cut(s) 206, 370, 469, 824, 827, 830, 833, 863
BseYI CCCAGC 1 cut(s) 758
Bsh1285I CGRYCG 2 cut(s) 189, 444
BshFI GGCC 3 cut(s) 163, 188, 657
BshNI GGYRCC 3 cut(s) 417, 462, 526
BshTI ACCGGT 1 cut(s) 514
BsiEI CGRYCG 2 cut(s) 189, 444
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 4 cut(s) 160, 440, 479, 515
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 5 cut(s) 108, 221, 446, 550, 743
BsmAI GTCTC 3 cut(s) 834, 876, 1000
BsmFI GGGAC 1 cut(s) 754
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 3 cut(s) 163, 188, 657
BsoBI CYCGRG 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 21, 356
Bsp143I GATC 5 cut(s) 42, 54, 740, 746, 786
BspANI GGCC 3 cut(s) 163, 188, 657
BspCNI CTCAG 3 cut(s) 426, 445, 709
BspLI GGNNCC 3 cut(s) 419, 464, 528
BspMAI CTGCAG 1 cut(s) 881
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 1 cut(s) 754
BspQI GCTCTTC 1 cut(s) 26
BspT107I GGYRCC 3 cut(s) 417, 462, 526
BsrBI CCGCTC 2 cut(s) 409, 472
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 3 cut(s) 159, 439, 514
BsrI ACTGG 3 cut(s) 112, 658, 890
BssAI RCCGGY 3 cut(s) 159, 439, 514
BssECI CCNNGG 2 cut(s) 13, 530
BssMI GATC 5 cut(s) 42, 54, 740, 746, 786
BssNI GRCGYC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 13
Bst2UI CCWGG 2 cut(s) 545, 702
Bst4CI ACNGT 3 cut(s) 526, 868, 1011
Bst6I CTCTTC 2 cut(s) 26, 57
BstACI GRCGYC 1 cut(s) 463
BstC8I GCNNGC 3 cut(s) 126, 161, 356
BstDEI CTNAG 3 cut(s) 413, 432, 717
BstEII GGTNACC 2 cut(s) 565, 888
BstENI CCTNNNNNAGG 2 cut(s) 219, 741
BstF5I GGATG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 466
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 5 cut(s) 45, 57, 743, 749, 789
BstMAI GTCTC 3 cut(s) 834, 876, 1000
BstMBI GATC 5 cut(s) 42, 54, 740, 746, 786
BstMCI CGRYCG 2 cut(s) 189, 444
BstMWI GCNNNNNNNGC 5 cut(s) 194, 469, 759, 818, 821
BstNI CCWGG 2 cut(s) 545, 702
BstPI GGTNACC 2 cut(s) 565, 888
BstSCI CCNGG 2 cut(s) 543, 700
BstSFI CTRYAG 1 cut(s) 877
BstV1I GCAGC 8 cut(s) 206, 370, 469, 824, 827, 830, 833, 863
BstV2I GAAGAC 3 cut(s) 291, 501, 647
BstXI CCANNNNNNTGG 1 cut(s) 902
BstZI CGGCCG 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 413
BsuRI GGCC 3 cut(s) 163, 188, 657
BtgZI GCGATG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 3 cut(s) 105, 972, 1020
BveI ACCTGC 1 cut(s) 429
Cac8I GCNNGC 3 cut(s) 126, 161, 356
CaiI CAGNNNCTG 1 cut(s) 885
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 3 cut(s) 159, 439, 514
Cfr13I GGNCC 6 cut(s) 10, 162, 394, 541, 846, 989
CseI GACGC 1 cut(s) 674
Csp6I GTAC 3 cut(s) 418, 665, 967
CspAI ACCGGT 1 cut(s) 514
CviAII CATG 4 cut(s) 200, 227, 750, 790
CviQI GTAC 3 cut(s) 418, 665, 967
DdeI CTNAG 3 cut(s) 413, 432, 717
DinI GGCGCC 1 cut(s) 464
DpnI GATC 5 cut(s) 44, 56, 742, 748, 788
DpnII GATC 5 cut(s) 42, 54, 740, 746, 786
DrdI GACNNNNNNGTC 1 cut(s) 78
DseDI GACNNNNNNGTC 1 cut(s) 78
EaeI YGGCCR 1 cut(s) 186
EagI CGGCCG 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 26, 57
EarI CTCTTC 2 cut(s) 26, 57
EciI GGCGGA 1 cut(s) 48
EclXI CGGCCG 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 21, 356
Eco47I GGWCC 5 cut(s) 10, 394, 541, 846, 989
Eco52I CGGCCG 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 828
Eco81I CCTNAGG 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 334
Eco91I GGTNACC 2 cut(s) 565, 888
EcoNI CCTNNNNNAGG 2 cut(s) 219, 741
EcoO109I RGGNCCY 1 cut(s) 541
EcoO65I GGTNACC 2 cut(s) 565, 888
EcoRII CCWGG 2 cut(s) 543, 700
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 21, 356
EgeI GGCGCC 1 cut(s) 464
EheI GGCGCC 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 4 cut(s) 203, 230, 753, 793
FaiI YATR 6 cut(s) 146, 201, 228, 751, 791, 987
FaqI GGGAC 1 cut(s) 754
FatI CATG 4 cut(s) 199, 226, 749, 789
FauI CCCGC 4 cut(s) 164, 363, 477, 779
FblI GTMKAC 3 cut(s) 269, 444, 731
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 2 cut(s) 21, 356
FspBI CTAG 1 cut(s) 738
GlaI GCGC 1 cut(s) 464
GsaI CCCAGC 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 466
HaeIII GGCC 3 cut(s) 163, 188, 657
HapII CCGG 4 cut(s) 160, 440, 479, 515
HgaI GACGC 1 cut(s) 674
HhaI GCGC 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 4 cut(s) 203, 230, 753, 793
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 6 cut(s) 72, 173, 401, 487, 629, 643
HpaII CCGG 4 cut(s) 160, 440, 479, 515
HphI GGTGA 8 cut(s) 106, 111, 504, 514, 529, 559, 559, 882
Hpy166II GTNNAC 4 cut(s) 114, 270, 445, 732
Hpy188I TCNGA 7 cut(s) 47, 284, 345, 492, 628, 718, 786
Hpy188III TCNNGA 2 cut(s) 336, 744
Hpy8I GTNNAC 4 cut(s) 114, 270, 445, 732
Hpy99I CGWCG 4 cut(s) 29, 81, 187, 449
HpyAV CCTTC 6 cut(s) 162, 273, 332, 621, 933, 996
HpyCH4III ACNGT 3 cut(s) 526, 868, 1011
HpyCH4IV ACGT 2 cut(s) 258, 272
HpyCH4V TGCA 6 cut(s) 4, 251, 305, 726, 753, 879
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 469, 759, 818, 821
HpyF3I CTNAG 3 cut(s) 413, 432, 717
HpySE526I ACGT 2 cut(s) 258, 272
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 4 cut(s) 203, 230, 753, 793
HspAI GCGC 1 cut(s) 463
KasI GGCGCC 1 cut(s) 462
KpnI GGTACC 1 cut(s) 421
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Kzo9I GATC 5 cut(s) 42, 54, 740, 746, 786
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 2 cut(s) 67, 414
Lsp1109I GCAGC 8 cut(s) 206, 370, 469, 824, 827, 830, 833, 863
LweI GCATC 1 cut(s) 803
MaeI CTAG 1 cut(s) 738
MaeII ACGT 2 cut(s) 258, 272
MaeIII GTNAC 3 cut(s) 565, 802, 888
MalI GATC 5 cut(s) 44, 56, 742, 748, 788
MbiI CCGCTC 2 cut(s) 409, 472
MboI GATC 5 cut(s) 42, 54, 740, 746, 786
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 2 cut(s) 21, 356
MluCI AATT 5 cut(s) 236, 291, 306, 347, 1026
Mly113I GGCGCC 1 cut(s) 463
MlyI GAGTC 4 cut(s) 66, 182, 395, 637
MmeI TCCRAC 2 cut(s) 201, 713
MroNI GCCGGC 1 cut(s) 159
MspA1I CMGCKG 2 cut(s) 460, 800
MspI CCGG 4 cut(s) 160, 440, 479, 515
MspR9I CCNGG 2 cut(s) 545, 702
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 2 cut(s) 545, 702
MwoI GCNNNNNNNGC 5 cut(s) 194, 469, 759, 818, 821
NaeI GCCGGC 1 cut(s) 161
NarI GGCGCC 1 cut(s) 463
NdeII GATC 5 cut(s) 42, 54, 740, 746, 786
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 4 cut(s) 203, 230, 753, 793
NlaIV GGNNCC 3 cut(s) 419, 464, 528
NmeAIII GCCGAG 1 cut(s) 555
NmuCI GTSAC 2 cut(s) 565, 888
PaeR7I CTCGAG 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PctI GAATGC 1 cut(s) 394
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 487, 629
PflFI GACNNNGTC 1 cut(s) 75
PinAI ACCGGT 1 cut(s) 514
PleI GAGTC 4 cut(s) 66, 181, 395, 637
PluTI GGCGCC 1 cut(s) 466
PpsI GAGTC 4 cut(s) 66, 181, 395, 637
PpuMI RGGWCCY 1 cut(s) 541
Psp1406I AACGTT 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 541
Psp6I CCWGG 2 cut(s) 543, 700
PspEI GGTNACC 2 cut(s) 565, 888
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 2 cut(s) 543, 700
PspN4I GGNNCC 3 cut(s) 419, 464, 528
PspPI GGNCC 6 cut(s) 10, 162, 394, 541, 846, 989
PspPPI RGGWCCY 1 cut(s) 541
PstI CTGCAG 1 cut(s) 881
PstNI CAGNNNCTG 1 cut(s) 885
PsyI GACNNNGTC 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 3 cut(s) 419, 666, 968
RsaNI GTAC 3 cut(s) 418, 665, 967
SalI GTCGAC 1 cut(s) 443
SapI GCTCTTC 1 cut(s) 26
Sau3AI GATC 5 cut(s) 42, 54, 740, 746, 786
Sau96I GGNCC 6 cut(s) 10, 162, 394, 541, 846, 989
SchI GAGTC 4 cut(s) 66, 182, 395, 637
ScrFI CCNGG 2 cut(s) 545, 702
SduI GDGCHC 2 cut(s) 21, 356
SfaNI GCATC 1 cut(s) 803
SfcI CTRYAG 1 cut(s) 877
SfoI GGCGCC 1 cut(s) 464
Sfr274I CTCGAG 1 cut(s) 334
SgrAI CRCCGGYG 1 cut(s) 514
SinI GGWCC 5 cut(s) 10, 394, 541, 846, 989
SlaI CTCGAG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 5 cut(s) 236, 291, 306, 347, 1026
SspDI GGCGCC 1 cut(s) 462
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 2 cut(s) 543, 700
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 3 cut(s) 526, 868, 1011
TaiI ACGT 2 cut(s) 261, 275
TaqI TCGA 7 cut(s) 24, 57, 182, 335, 399, 444, 587
TasI AATT 5 cut(s) 236, 291, 306, 347, 1026
TatI WGTACW 2 cut(s) 664, 966
TauI GCSGC 5 cut(s) 191, 194, 409, 463, 500
TfiI GAWTC 2 cut(s) 487, 629
TscAI CASTG 3 cut(s) 112, 979, 1020
TseFI GTSAC 2 cut(s) 565, 888
TseI GCWGC 8 cut(s) 194, 358, 457, 812, 815, 818, 821, 876
Tsp45I GTSAC 2 cut(s) 565, 888
TspDTI ATGAA 4 cut(s) 268, 269, 383, 603
TspGWI ACGGA 3 cut(s) 65, 285, 342
TspRI CASTG 3 cut(s) 112, 979, 1020
Tth111I GACNNNGTC 1 cut(s) 75
VpaK11BI GGWCC 5 cut(s) 10, 394, 541, 846, 989
XagI CCTNNNNNAGG 2 cut(s) 219, 741
XapI RAATTY 1 cut(s) 1026
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 334
XmiI GTMKAC 3 cut(s) 269, 444, 731
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.