Rmu_sc0002905.1_g000002

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002905.1
OG0000708
Physical Location & Seq
Reverse (-)
3643 .. 6577
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002905.1_g000002.1.cds

Sequence Viewer

Length: 558 bp
atggaacagcacttgcgaggttctcagtcgccgatcgacgtcttcaagtaccgccgtcgtcaactgtcgccgcttgcgcccctgcagaatctgatcgcgccccagccgggtcacggcgtttcggttgccggaagctacggctccaaaggccagtttgtgcatggtaaagaaaatctgcgtccaacttctttccctgccaagaacaaatccgaggcacagatgtgcaagtctacaactagctcaggattatgcacacccagcccaaagtcccacgtcgcccatcaggtcatggtgtcagctgttacagaagcagcagcagcagcagcagcgttaacctcatcgccaaagccaaagaacaccagtgagaccccaattactgtcatcagctgcaaggactggtcaccccaagatgatggcattgaggttatcttgcctccaactgaattaccttcatcgaacgaagatgtggatgcatccagcactgctgggctgagtcttgtctatggtcctactacaagaaggagattgccactgtttactgaaatttgcccagagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

185

Amino Acids

19.69

Weight (kDa)

8.37

Isoelectric Point (pI)

71.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 230
AccII CGCG 1 cut(s) 98
AciI CCGC 2 cut(s) 52, 71
AcsI RAATTY 1 cut(s) 543
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 107, 113
AgsI TTSAA 1 cut(s) 46
AjiI CACGTC 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 220
AluBI AGCT 4 cut(s) 135, 240, 299, 387
AluI AGCT 4 cut(s) 135, 240, 299, 387
Alw26I GTCTC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 91
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 7 cut(s) 311, 314, 317, 320, 323, 326, 387
ApoI RAATTY 1 cut(s) 543
AspLEI GCGC 2 cut(s) 79, 100
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 393
AvaII GGWCC 1 cut(s) 506
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 7 cut(s) 323, 326, 329, 332, 335, 338, 374
BccI CCATC 2 cut(s) 288, 407
BceAI ACGGC 3 cut(s) 39, 130, 154
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 8 cut(s) 71, 312, 315, 318, 321, 324, 327, 388
BlsI GCNGC 8 cut(s) 72, 313, 316, 319, 322, 325, 328, 389
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 506
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 460, 482
BpiI GAAGAC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 113
Bse1I ACTGG 3 cut(s) 151, 360, 401
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 473, 475
BseLI CCNNNNNNNGG 2 cut(s) 107, 113
BseMII CTCAG 3 cut(s) 38, 255, 482
BseNI ACTGG 3 cut(s) 151, 360, 401
BseXI GCAGC 7 cut(s) 323, 326, 329, 332, 335, 338, 374
BseYI CCCAGC 3 cut(s) 102, 257, 485
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 2 cut(s) 107, 129
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 107, 113
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 359
Bsp143I GATC 2 cut(s) 33, 93
BspACI CCGC 2 cut(s) 52, 71
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 3 cut(s) 37, 254, 483
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 359
BsrI ACTGG 3 cut(s) 151, 360, 401
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 33, 93
BssNI GRCGYC 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 66, 379, 534
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 24, 241, 491
BstEII GGTNACC 1 cut(s) 399
BstF5I GGATG 2 cut(s) 473, 475
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 2 cut(s) 79, 100
BstKTI GATC 2 cut(s) 36, 96
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 2 cut(s) 33, 93
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 7 cut(s) 76, 147, 258, 317, 320, 323, 326
BstPI GGTNACC 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 7 cut(s) 323, 326, 329, 332, 335, 338, 374
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 413
BsuRI GGCC 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 473, 475
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 3 cut(s) 367, 480, 530
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 2 cut(s) 79, 100
Cfr13I GGNCC 1 cut(s) 506
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 161, 289
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 24, 241, 491
DpnI GATC 2 cut(s) 35, 95
DpnII GATC 2 cut(s) 33, 93
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 506
Eco91I GGTNACC 1 cut(s) 399
EcoO65I GGTNACC 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 475
FaeI CATG 2 cut(s) 164, 292
FaiI YATR 4 cut(s) 162, 250, 290, 504
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 160, 288
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 8 cut(s) 71, 312, 315, 318, 321, 324, 327, 388
FokI GGATG 2 cut(s) 460, 482
Fsp4HI GCNGC 8 cut(s) 71, 312, 315, 318, 321, 324, 327, 388
FspBI CTAG 1 cut(s) 237
GlaI GCGC 2 cut(s) 78, 99
GluI GCNGC 8 cut(s) 71, 312, 315, 318, 321, 324, 327, 388
GsaI CCCAGC 3 cut(s) 106, 261, 489
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 107, 129
HgaI GACGC 1 cut(s) 167
HhaI GCGC 2 cut(s) 79, 100
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 164, 292
Hin6I GCGC 2 cut(s) 77, 98
HinP1I GCGC 2 cut(s) 77, 98
HincII GTYRAC 2 cut(s) 62, 333
HindII GTYRAC 2 cut(s) 62, 333
HinfI GANTC 2 cut(s) 88, 493
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 2 cut(s) 107, 129
HphI GGTGA 1 cut(s) 393
Hpy166II GTNNAC 4 cut(s) 62, 231, 333, 537
Hpy188I TCNGA 2 cut(s) 93, 211
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 4 cut(s) 62, 231, 333, 537
Hpy99I CGWCG 3 cut(s) 41, 60, 278
HpyAV CCTTC 2 cut(s) 459, 513
HpyCH4III ACNGT 3 cut(s) 66, 379, 534
HpyCH4IV ACGT 2 cut(s) 39, 273
HpyCH4V TGCA 6 cut(s) 85, 160, 225, 252, 390, 473
HpyF10VI GCNNNNNNNGC 7 cut(s) 76, 147, 258, 317, 320, 323, 326
HpyF3I CTNAG 3 cut(s) 24, 241, 491
HpySE526I ACGT 2 cut(s) 39, 273
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 164, 292
HspAI GCGC 2 cut(s) 77, 98
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 2 cut(s) 33, 93
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 7 cut(s) 323, 326, 329, 332, 335, 338, 374
LweI GCATC 2 cut(s) 460, 482
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 39, 273
MaeIII GTNAC 3 cut(s) 110, 301, 399
MalI GATC 2 cut(s) 35, 95
MboI GATC 2 cut(s) 33, 93
MboII GAAGA 2 cut(s) 34, 473
MluCI AATT 3 cut(s) 372, 443, 543
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 206, 461
MnlI CCTC 5 cut(s) 11, 205, 346, 415, 444
Mph1103I ATGCAT 1 cut(s) 475
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 2 cut(s) 299, 387
MspI CCGG 2 cut(s) 107, 129
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 7 cut(s) 76, 147, 258, 317, 320, 323, 326
NciI CCSGG 1 cut(s) 108
NdeII GATC 2 cut(s) 33, 93
NlaIII CATG 2 cut(s) 164, 292
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 110, 399
NsiI ATGCAT 1 cut(s) 475
OliI CACNNNNGTG 1 cut(s) 220
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 8 cut(s) 72, 313, 316, 319, 322, 325, 328, 389
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PspEI GGTNACC 1 cut(s) 399
PspFI CCCAGC 3 cut(s) 102, 257, 485
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 506
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 91
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 2 cut(s) 299, 387
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 8 cut(s) 71, 312, 315, 318, 321, 324, 327, 388
Sau3AI GATC 2 cut(s) 33, 93
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 1 cut(s) 108
SfaNI GCATC 2 cut(s) 460, 482
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 3 cut(s) 372, 443, 543
SsiI CCGC 2 cut(s) 52, 71
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 3 cut(s) 66, 379, 534
TaiI ACGT 2 cut(s) 42, 276
TaqI TCGA 2 cut(s) 36, 455
TasI AATT 3 cut(s) 372, 443, 543
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 3 cut(s) 367, 487, 537
TseFI GTSAC 2 cut(s) 110, 399
TseI GCWGC 7 cut(s) 311, 314, 317, 320, 323, 326, 387
Tsp45I GTSAC 2 cut(s) 110, 399
TspDTI ATGAA 1 cut(s) 441
TspRI CASTG 3 cut(s) 367, 487, 537
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 1 cut(s) 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 1 cut(s) 237
ZraI GACGTC 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.