Rroxscaffold_3G00225340

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000708
Physical Location & Seq
Forward (+)
8615906 .. 8618605
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225340.1

Sequence Viewer

Length: 747 bp
ATGTGCTTGTTTTTGCGCAGAGAGAGTGATGGAACAACACTTGCGAGGTTCTCAGTCGCTGATCAACGTCTTCAAGTACCGCCGCCGTCAACTGTCGCCGCTCGCGCCCCTGCACAATCTGATCTCGCCGCAGACGGAGGACGGCGTTTTGGTTGCCGGAAGCTACGGCTCCAAAGGCCAGGATATTGCTTAGGTACACTTGGTGGTGTGAGACTTTTAGATCTGCAAGATGCAAACTTGAGTGAGTTTAGGGTTCTTGCACTTGAACTAATATGTGTTCTTAAACTCTTGGAGCTTCTTAAGCTTGCACTTGAGAACTGCCATTTAAACTTTAAAACTAATCGAACATTTGAATATGGAAAAGAAAATCTGCATCCAACCTCTTTCCCTGCCAAGAACAAATCCGAGGCACAGATGTGCGAGGCTACAAGTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGTAGCAGCATTAGCCTCATCGCCAAGGCCAAATAACACGATTGAGACCCCGATTACTGTTATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTTCAACTGAAATACCTTCATCGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

248

Amino Acids

27.06

Weight (kDa)

8.07

Isoelectric Point (pI)

60.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 101
AccII CGCG 1 cut(s) 105
AciI CCGC 4 cut(s) 80, 83, 99, 129
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 1 cut(s) 479
AdeI CACNNNGTG 1 cut(s) 203
AfaI GTAC 2 cut(s) 78, 196
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 4 cut(s) 74, 266, 353, 624
AjnI CCWGG 1 cut(s) 178
AleI CACNNNNGTG 1 cut(s) 415
AluBI AGCT 5 cut(s) 163, 295, 304, 435, 573
AluI AGCT 5 cut(s) 163, 295, 304, 435, 573
Alw26I GTCTC 2 cut(s) 205, 545
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 2 cut(s) 176, 533
ApeKI GCWGC 4 cut(s) 500, 503, 512, 573
ApoI RAATTY 1 cut(s) 732
AspLEI GCGC 2 cut(s) 18, 107
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 4 cut(s) 512, 515, 524, 560
BccI CCATC 2 cut(s) 23, 593
BceAI ACGGC 3 cut(s) 70, 158, 182
BciT130I CCWGG 1 cut(s) 180
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 205, 545
BfaI CTAG 1 cut(s) 702
BfrI CTTAAG 1 cut(s) 299
BglII AGATCT 1 cut(s) 220
BisI GCNGC 7 cut(s) 83, 99, 129, 501, 504, 513, 574
BlsI GCNGC 7 cut(s) 84, 100, 130, 502, 505, 514, 575
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 5 cut(s) 220, 382, 497, 646, 668
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 2 cut(s) 190, 436
BpuEI CTTGAG 2 cut(s) 259, 332
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 405, 530
Bse1I ACTGG 1 cut(s) 587
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 405, 530
BseGI GGATG 4 cut(s) 373, 488, 659, 661
BseMII CTCAG 3 cut(s) 66, 450, 668
BseNI ACTGG 1 cut(s) 587
BseXI GCAGC 4 cut(s) 512, 515, 524, 560
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 178, 535
BsiSI CCGG 2 cut(s) 157, 663
BslFI GGGAC 1 cut(s) 448
BsmAI GTCTC 2 cut(s) 205, 545
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 2 cut(s) 178, 535
Bso31I GGTCTC 1 cut(s) 545
Bsp143I GATC 3 cut(s) 61, 121, 220
BspACI CCGC 4 cut(s) 80, 83, 99, 129
BspANI GGCC 2 cut(s) 178, 535
BspCNI CTCAG 3 cut(s) 65, 449, 669
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 170
BspTI CTTAAG 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 545
BsrBI CCGCTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 2 cut(s) 405, 530
BssMI GATC 3 cut(s) 61, 121, 220
BssT1I CCWWGG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 94, 565, 723
BstAFI CTTAAG 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 103, 306
BstDEI CTNAG 4 cut(s) 52, 190, 436, 677
BstEII GGTNACC 1 cut(s) 585
BstF5I GGATG 4 cut(s) 373, 488, 659, 661
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 2 cut(s) 18, 107
BstKTI GATC 3 cut(s) 64, 124, 223
BstMAI GTCTC 2 cut(s) 205, 545
BstMBI GATC 3 cut(s) 61, 121, 220
BstMWI GCNNNNNNNGC 7 cut(s) 104, 175, 301, 453, 509, 512, 518
BstNI CCWGG 1 cut(s) 180
BstPI GGTNACC 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 178
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 512, 515, 524, 560
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 599
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 178, 535
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 4 cut(s) 373, 488, 659, 661
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 666, 719
Cac8I GCNNGC 2 cut(s) 103, 306
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 2 cut(s) 18, 107
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 2 cut(s) 77, 195
CviAII CATG 1 cut(s) 484
CviQI GTAC 2 cut(s) 77, 195
DdeI CTNAG 4 cut(s) 52, 190, 436, 677
DpnI GATC 3 cut(s) 63, 123, 222
DpnII GATC 3 cut(s) 61, 121, 220
DraI TTTAAA 2 cut(s) 327, 334
DraIII CACNNNGTG 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 530
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 692
Eco57I CTGAAG 1 cut(s) 479
Eco91I GGTNACC 1 cut(s) 585
EcoO65I GGTNACC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 530
EcoT22I ATGCAT 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 1 cut(s) 487
FaiI YATR 5 cut(s) 274, 357, 445, 485, 690
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FaqI GGGAC 1 cut(s) 448
FatI CATG 1 cut(s) 483
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 7 cut(s) 83, 99, 129, 501, 504, 513, 574
FokI GGATG 4 cut(s) 360, 475, 646, 668
Fsp4HI GCNGC 7 cut(s) 83, 99, 129, 501, 504, 513, 574
FspBI CTAG 1 cut(s) 702
FspI TGCGCA 1 cut(s) 17
GlaI GCGC 2 cut(s) 17, 106
GluI GCNGC 7 cut(s) 83, 99, 129, 501, 504, 513, 574
GsaI CCCAGC 1 cut(s) 456
HaeIII GGCC 2 cut(s) 178, 535
HapII CCGG 2 cut(s) 157, 663
HhaI GCGC 2 cut(s) 18, 107
Hin1II CATG 1 cut(s) 487
Hin6I GCGC 2 cut(s) 16, 105
HinP1I GCGC 2 cut(s) 16, 105
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 679
HpaII CCGG 2 cut(s) 157, 663
HphI GGTGA 1 cut(s) 579
Hpy166II GTNNAC 2 cut(s) 90, 197
Hpy188I TCNGA 2 cut(s) 121, 406
Hpy188III TCNNGA 2 cut(s) 438, 492
Hpy8I GTNNAC 2 cut(s) 90, 197
HpyAV CCTTC 5 cut(s) 630, 637, 645, 702, 705
HpyCH4III ACNGT 3 cut(s) 94, 565, 723
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 9 cut(s) 113, 226, 233, 260, 308, 373, 447, 576, 659
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 175, 301, 453, 509, 512, 518
HpyF3I CTNAG 4 cut(s) 52, 190, 436, 677
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 487
HspAI GCGC 2 cut(s) 16, 105
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 61, 121, 220
LmnI GCTCC 2 cut(s) 174, 292
Lsp1109I GCAGC 4 cut(s) 512, 515, 524, 560
LweI GCATC 5 cut(s) 220, 382, 497, 646, 668
MaeI CTAG 1 cut(s) 702
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 585
MalI GATC 3 cut(s) 63, 123, 222
MbiI CCGCTC 1 cut(s) 101
MboI GATC 3 cut(s) 61, 121, 220
MboII GAAGA 3 cut(s) 62, 659, 717
MflI RGATCY 1 cut(s) 220
MluCI AATT 1 cut(s) 732
MlyI GAGTC 1 cut(s) 688
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 7 cut(s) 39, 131, 391, 400, 415, 532, 601
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 4 cut(s) 282, 300, 326, 333
MslI CAYNNNNRTG 1 cut(s) 415
MspA1I CMGCKG 1 cut(s) 573
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 2 cut(s) 157, 663
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 7 cut(s) 104, 175, 301, 453, 509, 512, 518
NdeII GATC 3 cut(s) 61, 121, 220
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 585
NsbI TGCGCA 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 661
OliI CACNNNNGTG 1 cut(s) 415
PkrI GCNGC 7 cut(s) 84, 100, 130, 502, 505, 514, 575
PleI GAGTC 1 cut(s) 687
PpsI GAGTC 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 178
PspEI GGTNACC 1 cut(s) 585
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 692
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 573
RsaI GTAC 2 cut(s) 78, 196
RsaNI GTAC 2 cut(s) 77, 195
RseI CAYNNNNRTG 1 cut(s) 415
SaqAI TTAA 4 cut(s) 282, 300, 326, 333
SatI GCNGC 7 cut(s) 83, 99, 129, 501, 504, 513, 574
Sau3AI GATC 3 cut(s) 61, 121, 220
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 1 cut(s) 180
SfaNI GCATC 5 cut(s) 220, 382, 497, 646, 668
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 1 cut(s) 415
SmlI CTYRAG 3 cut(s) 238, 299, 311
SmoI CTYRAG 3 cut(s) 238, 299, 311
Sse9I AATT 1 cut(s) 732
SsiI CCGC 4 cut(s) 80, 83, 99, 129
SspMI CTAG 1 cut(s) 702
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 3 cut(s) 94, 565, 723
TaiI ACGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 343, 641
TasI AATT 1 cut(s) 732
TauI GCSGC 3 cut(s) 85, 101, 131
Tru1I TTAA 4 cut(s) 282, 300, 326, 333
Tru9I TTAA 4 cut(s) 282, 300, 326, 333
TscAI CASTG 2 cut(s) 673, 726
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 4 cut(s) 500, 503, 512, 573
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 1 cut(s) 627
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 2 cut(s) 673, 726
Vha464I CTTAAG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 1 cut(s) 732
XspI CTAG 1 cut(s) 702
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.