Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Forward (+)

10364123 .. 10366654

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGCAGCACTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTATCGCCGTCGTCAACTGTCGCCGCTCGCGCCTCTGCAGAATCTGATCGCGCCGCAGACGGAGGACGGCGTTTCGGTTGCCGGAAGCTACGGCTCCAAAGGCCAGTTTGTATATGGAAAAGAAAATCTGCATCCAACTTCTTTCCCTGCCAAGAACAAATCCGAGGCACAGATGTGCGAGGCTACAAGTAGCTCAGCATTATGCACCCCCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCATTAGCCTCATCGCCAAAGCCAAATAACACCATTGAGACCCCGATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTTCAACTGAAATACCTTCATCGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

181

Amino Acids

19.52

Weight (kDa)

6.31

Isoelectric Point (pI)

74.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	73
AccII	CGCG	2 cut(s)	77, 98
AciI	CCGC	2 cut(s)	71, 101
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	46, 420
AleI	CACNNNNGTG	1 cut(s)	220
AluBI	AGCT	3 cut(s)	135, 240, 369
AluI	AGCT	3 cut(s)	135, 240, 369
Alw26I	GTCTC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	4 cut(s)	7, 305, 308, 369
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	79, 100
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	4 cut(s)	19, 317, 320, 356
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	3 cut(s)	39, 130, 154
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	83
BisI	GCNGC	6 cut(s)	8, 71, 101, 306, 309, 370
BlpI	GCTNAGC	1 cut(s)	241
BlsI	GCNGC	6 cut(s)	9, 72, 102, 307, 310, 371
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	4 cut(s)	187, 302, 442, 464
BpiI	GAAGAC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	151, 383
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	4 cut(s)	178, 293, 455, 457
BseMII	CTCAG	3 cut(s)	38, 255, 464
BseNI	ACTGG	2 cut(s)	151, 383
BseXI	GCAGC	4 cut(s)	19, 317, 320, 356
BseYI	CCCAGC	1 cut(s)	257
Bsh1236I	CGCG	2 cut(s)	77, 98
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	129, 459
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	33, 93
Bsp1720I	GCTNAGC	1 cut(s)	241
BspACI	CCGC	2 cut(s)	71, 101
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	3 cut(s)	37, 254, 465
BspFNI	CGCG	2 cut(s)	77, 98
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	151, 383
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	33, 93
BssNI	GRCGYC	1 cut(s)	39
Bst4CI	ACNGT	3 cut(s)	66, 361, 519
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	24, 241, 473
BstEII	GGTNACC	1 cut(s)	381
BstF5I	GGATG	4 cut(s)	178, 293, 455, 457
BstFNI	CGCG	2 cut(s)	77, 98
BstHHI	GCGC	2 cut(s)	79, 100
BstKTI	GATC	2 cut(s)	36, 96
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	2 cut(s)	33, 93
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 76, 147, 258, 314
BstPI	GGTNACC	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	83
BstUI	CGCG	2 cut(s)	77, 98
BstV1I	GCAGC	4 cut(s)	19, 317, 320, 356
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	4 cut(s)	178, 293, 455, 457
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	462, 515
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	2 cut(s)	79, 100
Cfr13I	GGNCC	1 cut(s)	488
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	9 cut(s)	135, 141, 150, 230, 240, 261, 317, 331, 369
CviKI_1	RGCY	9 cut(s)	135, 141, 150, 230, 240, 261, 317, 331, 369
DdeI	CTNAG	3 cut(s)	24, 241, 473
DpnI	GATC	2 cut(s)	35, 95
DpnII	GATC	2 cut(s)	33, 93
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	381
EcoO65I	GGTNACC	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	1 cut(s)	292
FaiI	YATR	5 cut(s)	160, 162, 250, 290, 486
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	6 cut(s)	8, 71, 101, 306, 309, 370
FokI	GGATG	4 cut(s)	165, 280, 442, 464
Fsp4HI	GCNGC	6 cut(s)	8, 71, 101, 306, 309, 370
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	2 cut(s)	78, 99
GluI	GCNGC	6 cut(s)	8, 71, 101, 306, 309, 370
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	129, 459
HhaI	GCGC	2 cut(s)	79, 100
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	2 cut(s)	77, 98
HinP1I	GCGC	2 cut(s)	77, 98
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	88, 475
HpaII	CCGG	2 cut(s)	129, 459
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	93, 211
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	2 cut(s)	41, 60
HpyAV	CCTTC	5 cut(s)	426, 433, 441, 498, 501
HpyCH4III	ACNGT	3 cut(s)	66, 361, 519
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	5 cut(s)	85, 178, 252, 372, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 76, 147, 258, 314
HpyF3I	CTNAG	3 cut(s)	24, 241, 473
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	2 cut(s)	77, 98
Kzo9I	GATC	2 cut(s)	33, 93
LmnI	GCTCC	2 cut(s)	4, 146
LpnPI	CCDG	9 cut(s)	142, 164, 207, 269, 271, 275, 310, 364, 472
Lsp1109I	GCAGC	4 cut(s)	19, 317, 320, 356
LweI	GCATC	4 cut(s)	187, 302, 442, 464
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	2 cut(s)	35, 95
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	2 cut(s)	33, 93
MboII	GAAGA	3 cut(s)	34, 455, 513
MluCI	AATT	1 cut(s)	528
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	11, 90, 103, 205, 220, 328, 397
Mph1103I	ATGCAT	1 cut(s)	457
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	2 cut(s)	129, 459
MvnI	CGCG	2 cut(s)	77, 98
MwoI	GCNNNNNNNGC	5 cut(s)	13, 76, 147, 258, 314
NdeII	GATC	2 cut(s)	33, 93
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	6 cut(s)	9, 72, 102, 307, 310, 371
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PspEI	GGTNACC	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	220
SatI	GCNGC	6 cut(s)	8, 71, 101, 306, 309, 370
Sau3AI	GATC	2 cut(s)	33, 93
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	484
SetI	ASST	8 cut(s)	22, 42, 137, 242, 288, 371, 408, 433
SfaNI	GCATC	4 cut(s)	187, 302, 442, 464
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	71, 101
SspMI	CTAG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	66, 361, 519
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	36, 437
TasI	AATT	1 cut(s)	528
TauI	GCSGC	2 cut(s)	73, 103
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	2 cut(s)	469, 522
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	4 cut(s)	7, 305, 308, 369
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	469, 522
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XspI	CTAG	1 cut(s)	498
ZraI	GACGTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.