Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003720.1

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Forward (+)

47910 .. 50640

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003720.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggaacagcacttgcgaggttctcagtcgccgatcgacgtcttcaagtaccgccgtcgtcaactgtcgccgctcgcgcccctgcagaatctgatcgcgccgcagccgggtgacggcgtttcgatgtgcaagtctacaactagctcaggattatgcacacccagcccaaagtcccacgtcgcccatcaggtcatgtcgtcagctgttacagaagcagcagcagcagcgttaacctcatcgccaaagccaaataacaccagcgagaccccaattactgtcatcagctgcaaggactggtcaccccaagatgatggcattgaggttatcttgcctccaactgaattaccttcatcgaacgaagatgtggatgcatccagcactgctgggctgagtcttgtctatggtcctactacaacaaggagattgccactgtttactgaaatttgcccagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

151

Amino Acids

16.04

Weight (kDa)

5.31

Isoelectric Point (pI)

81.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	2 cut(s)	77, 98
AciI	CCGC	3 cut(s)	52, 71, 101
AcsI	RAATTY	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	107, 113
AgsI	TTSAA	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	178
AluBI	AGCT	3 cut(s)	144, 203, 285
AluI	AGCT	3 cut(s)	144, 203, 285
Alw26I	GTCTC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	91
ApeKI	GCWGC	6 cut(s)	103, 215, 218, 221, 224, 285
ApoI	RAATTY	1 cut(s)	441
AspLEI	GCGC	2 cut(s)	79, 100
AspS9I	GGNCC	1 cut(s)	404
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	122, 291
AvaII	GGWCC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	6 cut(s)	115, 227, 230, 233, 236, 272
BccI	CCATC	2 cut(s)	192, 305
BceAI	ACGGC	2 cut(s)	39, 130
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	83
BisI	GCNGC	8 cut(s)	71, 101, 104, 216, 219, 222, 225, 286
BlsI	GCNGC	8 cut(s)	72, 102, 105, 217, 220, 223, 226, 287
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	358, 380
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 113
Bse1I	ACTGG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	371, 373
BseLI	CCNNNNNNNGG	2 cut(s)	107, 113
BseMII	CTCAG	3 cut(s)	38, 159, 380
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	6 cut(s)	115, 227, 230, 233, 236, 272
BseYI	CCCAGC	2 cut(s)	161, 383
Bsh1236I	CGCG	2 cut(s)	77, 98
Bsh1285I	CGRYCG	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	107, 113
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	157
Bso31I	GGTCTC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	33, 93
BspACI	CCGC	3 cut(s)	52, 71, 101
BspCNI	CTCAG	3 cut(s)	37, 158, 381
BspFNI	CGCG	2 cut(s)	77, 98
BspMAI	CTGCAG	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	299
BssMI	GATC	2 cut(s)	33, 93
BssNI	GRCGYC	1 cut(s)	39
Bst4CI	ACNGT	3 cut(s)	66, 277, 432
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	24, 145, 389
BstEII	GGTNACC	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	371, 373
BstFNI	CGCG	2 cut(s)	77, 98
BstHHI	GCGC	2 cut(s)	79, 100
BstKTI	GATC	2 cut(s)	36, 96
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	2 cut(s)	33, 93
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 162, 221, 224
BstPI	GGTNACC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	83
BstUI	CGCG	2 cut(s)	77, 98
BstV1I	GCAGC	6 cut(s)	115, 227, 230, 233, 236, 272
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	371, 373
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 428
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	2 cut(s)	79, 100
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	7 cut(s)	106, 144, 165, 203, 247, 285, 388
CviKI_1	RGCY	7 cut(s)	106, 144, 165, 203, 247, 285, 388
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	24, 145, 389
DpnI	GATC	2 cut(s)	35, 95
DpnII	GATC	2 cut(s)	33, 93
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	404
Eco91I	GGTNACC	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	373
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	154, 194, 402
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	8 cut(s)	71, 101, 104, 216, 219, 222, 225, 286
FokI	GGATG	2 cut(s)	358, 380
Fsp4HI	GCNGC	8 cut(s)	71, 101, 104, 216, 219, 222, 225, 286
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	2 cut(s)	78, 99
GluI	GCNGC	8 cut(s)	71, 101, 104, 216, 219, 222, 225, 286
GsaI	CCCAGC	2 cut(s)	165, 387
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	2 cut(s)	79, 100
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	77, 98
HinP1I	GCGC	2 cut(s)	77, 98
HincII	GTYRAC	2 cut(s)	62, 231
HindII	GTYRAC	2 cut(s)	62, 231
HinfI	GANTC	2 cut(s)	88, 391
HpaI	GTTAAC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	122, 291
Hpy166II	GTNNAC	4 cut(s)	62, 135, 231, 435
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	4 cut(s)	62, 135, 231, 435
Hpy99I	CGWCG	3 cut(s)	41, 60, 182
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	3 cut(s)	66, 277, 432
HpyCH4IV	ACGT	2 cut(s)	39, 177
HpyCH4V	TGCA	5 cut(s)	85, 129, 156, 288, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 162, 221, 224
HpyF3I	CTNAG	3 cut(s)	24, 145, 389
HpySE526I	ACGT	2 cut(s)	39, 177
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	77, 98
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	33, 93
LpnPI	CCDG	9 cut(s)	95, 120, 132, 173, 175, 271, 280, 369, 388
Lsp1109I	GCAGC	6 cut(s)	115, 227, 230, 233, 236, 272
LweI	GCATC	2 cut(s)	358, 380
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	2 cut(s)	39, 177
MaeIII	GTNAC	3 cut(s)	110, 205, 297
MalI	GATC	2 cut(s)	35, 95
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	2 cut(s)	33, 93
MboII	GAAGA	2 cut(s)	34, 371
MluCI	AATT	3 cut(s)	270, 341, 441
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	4 cut(s)	11, 244, 313, 342
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	203, 285
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	77, 98
MwoI	GCNNNNNNNGC	4 cut(s)	76, 162, 221, 224
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	33, 93
NlaIII	CATG	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	110, 297
NsiI	ATGCAT	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	8 cut(s)	72, 102, 105, 217, 220, 223, 226, 287
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PspEI	GGTNACC	1 cut(s)	297
PspFI	CCCAGC	2 cut(s)	161, 383
PspPI	GGNCC	1 cut(s)	404
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	2 cut(s)	203, 285
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	8 cut(s)	71, 101, 104, 216, 219, 222, 225, 286
Sau3AI	GATC	2 cut(s)	33, 93
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	108
SfaNI	GCATC	2 cut(s)	358, 380
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	404
Sse9I	AATT	3 cut(s)	270, 341, 441
SsiI	CCGC	3 cut(s)	52, 71, 101
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	66, 277, 432
TaiI	ACGT	2 cut(s)	42, 180
TaqI	TCGA	3 cut(s)	36, 122, 353
TasI	AATT	3 cut(s)	270, 341, 441
TauI	GCSGC	2 cut(s)	73, 103
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	385, 435
TseFI	GTSAC	2 cut(s)	110, 297
TseI	GCWGC	6 cut(s)	103, 215, 218, 221, 224, 285
Tsp45I	GTSAC	2 cut(s)	110, 297
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	385, 435
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	141
ZraI	GACGTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.