Rorug03G0196000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000708
Physical Location & Seq
Reverse (-)
17210930 .. 17227527
16598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0196000.1

Sequence Viewer

Length: 1434 bp
ATGGATCAGTTGGATAAATTAAGCAACTTACCAACTGGTGTTACACACCAGATTTTGTCATACTTACCTATAAAGCAGGCAGTGAGGACAAGTATATTATCGAGTGACTGGAGGTACAAATGGGCTCAGCTTCCGTGTCTTGTGTTTGATGATAAAAGTGGATATCCAATTGCAAAGGTTGTGGATCATGTGCTGTTACTTCATAGTGGCCGCATTGACACTTTCAAGCTTTCTACTTTTAACTATCCAGCCCATAGGGATATAGATAAATGGATTGCTCATCTATCAAGAAACAATGTCAAAGTGTTCGTACTGAAAGTATGGAAGCAGTCTCCCTACAATGTGTTTTCCGGCTTCTTTTCTTTTAAAGATTTGACTCATTTAGAGTTATGCAATTGTTTGCTTAAACCTCCAACGACATTCAAAGGCTTCAGGATGTTGAAGAGCCTTCATCTTCAAGAAGTTAAAGTGCCCGGAAATGTGTTGGGAAAACTAATTGCTTGCTGTCCTCAGCTTGAGAGAATAATTCTATGTGACTTAAAGGGAATCACTGATGTCACTATTGATGCACCAAGTATCCGGTTCCTTAGAGTTAAAGGCAGTTTTGAGGATGCTCAACTAGCAAATACCTTAAATCTTGTTGATGTTTCAATTGACTGGAAACAAGTTTCTACAATCAGTTCTGGCAAATTGCTCAGGTATTTTTTTGAACTGCCTCGTATTGAAAGGCTCACACTTAAGGATGGCTTTTTAGAGTATGCTGCTGGTTCCTTGACCAAGAAGCTGCTGCCTAAACCATGTCTATGTCTGAACTTTCTTTCTATAAGAATACGCTTGAATAATTTGGACGAGATTTTAACTGCTATCCACCTTATGAGAAGCGCACCTGCTCTACAAGAACTAAACATTTTGGTTCGAAAAGGAGAAGAGACTAATGATGGAGAAGCAACCTATTGTTTAAGTGACAAACAGAATTGGGAATTCACCCAACTGCAACGAGTGAAAGTAACCGGCTTCTCTGGTGTCAAAGCAGAAGTAGACTTCATTGAATTTCTGTTATTAACCTCACCTGGTCTTCAAGAACTAGAAATTTCATTTTGTCAAGATGTGGAAGAAGTGGACTTTTCTTGGTTAGATGACAACCAGAAGACTTGTGCATTCACACAACTGCGAGTTGTGAAAGTAACTGGCTTCTCTGGTGTCAAAGCCGAAGTAGATTTCATTAGATTTCTGCTTTCAAGTACTTCACAAATGCTTGAGAAAATTATTCTTCAACCTGCTTCTGCCAAAGTTAATTGGGAAGTATTTAAATTATTGCCGGCGTTCAGACGCGACTCATTACATGCAGATTTAAAGCTCTTGGACCCATCAATTCATGTACAGGATTCTGATGACTCATCTTCTGACTCCGACTCTGATATGGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

477

Amino Acids

54.33

Weight (kDa)

6.57

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 67 - 371 8.9e-15 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 88 - 303 9.9e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 895
Acc36I ACCTGC 2 cut(s) 895, 1285
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 1 cut(s) 1332
AciI CCGC 1 cut(s) 211
AclWI GGATC 2 cut(s) 12, 192
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 3 cut(s) 980, 1049, 1089
AcuI CTGAAG 1 cut(s) 415
AfaI GTAC 4 cut(s) 116, 312, 1243, 1380
AflII CTTAAG 1 cut(s) 737
AjnI CCWGG 1 cut(s) 1069
AluBI AGCT 5 cut(s) 130, 229, 514, 784, 1357
AluI AGCT 5 cut(s) 130, 229, 514, 784, 1357
Alw26I GTCTC 2 cut(s) 336, 923
AlwI GGATC 2 cut(s) 12, 192
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 3 cut(s) 761, 784, 787
ApoI RAATTY 3 cut(s) 980, 1049, 1089
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 1 cut(s) 1363
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 2 cut(s) 976, 1059
AsuII TTCGAA 1 cut(s) 916
AvaII GGWCC 1 cut(s) 1363
BaeGI GKGCMC 1 cut(s) 474
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 2 cut(s) 1067, 1154
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 748, 771, 774
BccI CCATC 3 cut(s) 737, 932, 1375
BciT130I CCWGG 1 cut(s) 1071
BciVI GTATCC 1 cut(s) 587
BcnI CCSGG 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 336, 923
BfaI CTAG 2 cut(s) 620, 1085
BfrI CTTAAG 1 cut(s) 737
BfuAI ACCTGC 2 cut(s) 895, 1285
BfuI GTATCC 1 cut(s) 587
BisI GCNGC 4 cut(s) 211, 762, 785, 788
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 4 cut(s) 212, 763, 786, 789
BmcAI AGTACT 1 cut(s) 1243
Bme1390I CCNGG 2 cut(s) 474, 1071
Bme18I GGWCC 1 cut(s) 1363
BmgT120I GGNCC 1 cut(s) 1363
BmiI GGNNCC 3 cut(s) 584, 769, 1365
BmrFI CCNGG 2 cut(s) 474, 1071
BmsI GCATC 2 cut(s) 556, 601
BpiI GAAGAC 2 cut(s) 1067, 1154
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 2 cut(s) 510, 695
Bpu1102I GCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 916
BpuEI CTTGAG 2 cut(s) 536, 1277
BpuMI CCSGG 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 579
Bse118I RCCGGY 2 cut(s) 1010, 1318
Bse1I ACTGG 5 cut(s) 40, 113, 662, 1192, 1433
BseBI CCWGG 1 cut(s) 1071
BseGI GGATG 3 cut(s) 441, 616, 748
BseMII CTCAG 3 cut(s) 140, 524, 709
BseNI ACTGG 5 cut(s) 40, 113, 662, 1192, 1433
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 3 cut(s) 748, 771, 774
Bsh1236I CGCG 1 cut(s) 1332
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 5 cut(s) 351, 474, 580, 1011, 1319
BsmAI GTCTC 2 cut(s) 336, 923
BsmI GAATGC 1 cut(s) 1157
BsnI GGCC 1 cut(s) 210
Bsp119I TTCGAA 1 cut(s) 916
Bsp1286I GDGCHC 2 cut(s) 127, 474
Bsp1407I TGTACA 1 cut(s) 1378
Bsp143I GATC 2 cut(s) 4, 184
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 3 cut(s) 139, 523, 708
BspFNI CGCG 1 cut(s) 1332
BspLI GGNNCC 3 cut(s) 584, 769, 1365
BspMI ACCTGC 2 cut(s) 895, 1285
BspPI GGATC 2 cut(s) 12, 192
BspQI GCTCTTC 1 cut(s) 437
BspT104I TTCGAA 1 cut(s) 916
BspTI CTTAAG 1 cut(s) 737
BsrFI RCCGGY 2 cut(s) 1010, 1318
BsrGI TGTACA 1 cut(s) 1378
BsrI ACTGG 5 cut(s) 40, 113, 662, 1192, 1433
BssAI RCCGGY 2 cut(s) 1010, 1318
BssMI GATC 2 cut(s) 4, 184
Bst2UI CCWGG 1 cut(s) 1071
Bst6I CTCTTC 2 cut(s) 437, 921
BstAFI CTTAAG 1 cut(s) 737
BstAUI TGTACA 1 cut(s) 1378
BstBI TTCGAA 1 cut(s) 916
BstC8I GCNNGC 3 cut(s) 78, 502, 1320
BstDEI CTNAG 4 cut(s) 126, 510, 587, 695
BstF5I GGATG 3 cut(s) 441, 616, 748
BstFNI CGCG 1 cut(s) 1332
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 2 cut(s) 7, 187
BstMAI GTCTC 2 cut(s) 336, 923
BstMBI GATC 2 cut(s) 4, 184
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNI CCWGG 1 cut(s) 1071
BstNSI RCATGY 1 cut(s) 1346
BstSCI CCNGG 2 cut(s) 472, 1069
BstSLI GKGCMC 1 cut(s) 474
BstUI CGCG 1 cut(s) 1332
BstV1I GCAGC 3 cut(s) 748, 771, 774
BstV2I GAAGAC 2 cut(s) 1067, 1154
BsuI GTATCC 1 cut(s) 587
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 3 cut(s) 441, 616, 748
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 549
BveI ACCTGC 2 cut(s) 895, 1285
Cac8I GCNNGC 3 cut(s) 78, 502, 1320
CfoI GCGC 1 cut(s) 884
Cfr10I RCCGGY 2 cut(s) 1010, 1318
Cfr13I GGNCC 1 cut(s) 1363
CseI GACGC 1 cut(s) 1338
CsiI ACCWGGT 1 cut(s) 1069
Csp6I GTAC 4 cut(s) 115, 311, 1242, 1379
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 4 cut(s) 188, 798, 1343, 1376
CviQI GTAC 4 cut(s) 115, 311, 1242, 1379
DdeI CTNAG 4 cut(s) 126, 510, 587, 695
DpnI GATC 2 cut(s) 6, 186
DpnII GATC 2 cut(s) 4, 184
DraI TTTAAA 3 cut(s) 367, 1309, 1353
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 437, 921
EarI CTCTTC 2 cut(s) 437, 921
Eco24I GRGCYC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 1363
Eco57I CTGAAG 1 cut(s) 415
EcoRI GAATTC 1 cut(s) 980
EcoRII CCWGG 1 cut(s) 1069
EcoRV GATATC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 127
FaeI CATG 4 cut(s) 191, 801, 1346, 1379
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FatI CATG 4 cut(s) 187, 797, 1342, 1375
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 4 cut(s) 211, 762, 785, 788
FokI GGATG 3 cut(s) 448, 623, 755
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 4 cut(s) 211, 762, 785, 788
FspBI CTAG 2 cut(s) 620, 1085
GlaI GCGC 1 cut(s) 883
GluI GCNGC 4 cut(s) 211, 762, 785, 788
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 210
HapII CCGG 5 cut(s) 351, 474, 580, 1011, 1319
HgaI GACGC 1 cut(s) 1338
HhaI GCGC 1 cut(s) 884
Hin1II CATG 4 cut(s) 191, 801, 1346, 1379
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 7 cut(s) 376, 546, 1334, 1385, 1394, 1406, 1412
HpaII CCGG 5 cut(s) 351, 474, 580, 1011, 1319
HphI GGTGA 2 cut(s) 976, 1059
Hpy166II GTNNAC 2 cut(s) 1039, 1120
Hpy188I TCNGA 6 cut(s) 810, 1328, 1390, 1405, 1411, 1417
Hpy188III TCNNGA 5 cut(s) 288, 433, 458, 1079, 1103
Hpy8I GTNNAC 2 cut(s) 1039, 1120
HpyAV CCTTC 1 cut(s) 458
HpyCH4V TGCA 6 cut(s) 173, 393, 569, 994, 1157, 1346
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 4 cut(s) 126, 510, 587, 695
Hsp92II CATG 4 cut(s) 191, 801, 1346, 1379
HspAI GCGC 1 cut(s) 882
KroI GCCGGC 1 cut(s) 1318
KroNI GCCGGC 1 cut(s) 1320
Kzo9I GATC 2 cut(s) 4, 184
LguI GCTCTTC 1 cut(s) 437
Lsp1109I GCAGC 3 cut(s) 748, 771, 774
LweI GCATC 2 cut(s) 556, 601
MabI ACCWGGT 1 cut(s) 1069
MaeI CTAG 2 cut(s) 620, 1085
MaeIII GTNAC 8 cut(s) 40, 104, 195, 533, 556, 962, 1006, 1183
MalI GATC 2 cut(s) 6, 186
MboI GATC 2 cut(s) 4, 184
MboII GAAGA 8 cut(s) 446, 454, 938, 1067, 1124, 1159, 1262, 1392
MfeI CAATTG 3 cut(s) 168, 394, 651
MhlI GDGCHC 2 cut(s) 127, 474
MlyI GAGTC 5 cut(s) 370, 1328, 1388, 1400, 1406
MmeI TCCRAC 2 cut(s) 437, 1434
MnlI CCTC 7 cut(s) 78, 105, 420, 519, 601, 726, 1075
MroNI GCCGGC 1 cut(s) 1318
MslI CAYNNNNRTG 1 cut(s) 802
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 5 cut(s) 351, 474, 580, 1011, 1319
MspR9I CCNGG 2 cut(s) 474, 1071
MunI CAATTG 3 cut(s) 168, 394, 651
Mva1269I GAATGC 1 cut(s) 1157
MvaI CCWGG 1 cut(s) 1071
MvnI CGCG 1 cut(s) 1332
MwoI GCNNNNNNNGC 1 cut(s) 620
NaeI GCCGGC 1 cut(s) 1320
NciI CCSGG 1 cut(s) 474
NdeII GATC 2 cut(s) 4, 184
NgoMIV GCCGGC 1 cut(s) 1318
NlaIII CATG 4 cut(s) 191, 801, 1346, 1379
NlaIV GGNNCC 3 cut(s) 584, 769, 1365
NmuCI GTSAC 4 cut(s) 104, 533, 556, 962
NspI RCATGY 1 cut(s) 1346
NspV TTCGAA 1 cut(s) 916
PaqCI CACCTGC 1 cut(s) 895
PciSI GCTCTTC 1 cut(s) 437
PctI GAATGC 1 cut(s) 1157
PdiI GCCGGC 1 cut(s) 1320
PfeI GAWTC 2 cut(s) 546, 1385
PkrI GCNGC 4 cut(s) 212, 763, 786, 789
PleI GAGTC 5 cut(s) 370, 1328, 1388, 1400, 1406
PpsI GAGTC 5 cut(s) 370, 1328, 1388, 1400, 1406
Psp6I CCWGG 1 cut(s) 1069
PspGI CCWGG 1 cut(s) 1069
PspN4I GGNNCC 3 cut(s) 584, 769, 1365
PspPI GGNCC 1 cut(s) 1363
RsaI GTAC 4 cut(s) 116, 312, 1243, 1380
RsaNI GTAC 4 cut(s) 115, 311, 1242, 1379
RseI CAYNNNNRTG 1 cut(s) 802
SapI GCTCTTC 1 cut(s) 437
SatI GCNGC 4 cut(s) 211, 762, 785, 788
Sau3AI GATC 2 cut(s) 4, 184
Sau96I GGNCC 1 cut(s) 1363
ScaI AGTACT 1 cut(s) 1243
SchI GAGTC 5 cut(s) 370, 1328, 1388, 1400, 1406
ScrFI CCNGG 2 cut(s) 474, 1071
SduI GDGCHC 2 cut(s) 127, 474
SexAI ACCWGGT 1 cut(s) 1069
SfaNI GCATC 2 cut(s) 556, 601
SfuI TTCGAA 1 cut(s) 916
SinI GGWCC 1 cut(s) 1363
SmiI ATTTAAAT 1 cut(s) 1309
SmiMI CAYNNNNRTG 1 cut(s) 802
SmlI CTYRAG 3 cut(s) 515, 737, 1256
SmoI CTYRAG 3 cut(s) 515, 737, 1256
SsiI CCGC 1 cut(s) 211
SspMI CTAG 2 cut(s) 620, 1085
StyD4I CCNGG 2 cut(s) 472, 1069
SwaI ATTTAAAT 1 cut(s) 1309
TaqI TCGA 2 cut(s) 101, 916
TatI WGTACW 2 cut(s) 1241, 1378
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 2 cut(s) 546, 1385
TscAI CASTG 2 cut(s) 87, 556
TseFI GTSAC 4 cut(s) 104, 533, 556, 962
TseI GCWGC 3 cut(s) 761, 784, 787
Tsp45I GTSAC 4 cut(s) 104, 533, 556, 962
TspDTI ATGAA 6 cut(s) 191, 440, 1033, 1083, 1210, 1364
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 2 cut(s) 87, 556
Vha464I CTTAAG 1 cut(s) 737
VpaK11BI GGWCC 1 cut(s) 1363
XapI RAATTY 3 cut(s) 980, 1049, 1089
XceI RCATGY 1 cut(s) 1346
XmiI GTMKAC 1 cut(s) 1038
XspI CTAG 2 cut(s) 620, 1085
ZrmI AGTACT 1 cut(s) 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.