Rorug07G0297000

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000542
Physical Location & Seq
Forward (+)
29265036 .. 29270742
5707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0297000.1

Sequence Viewer

Length: 984 bp
ATGGCTCTCCTTCCACCACCAGCTTCGCCTTCCTCCCTTGCCTCTTTCATTTCTCGTCCTCCATCTCTCGCCCTCAAATCCACAACCAACCTCACATTTCCCAAACGTCGTCGTTCGGTATGCACAGCTTCATGGCAAGAGCTTGTGGGAGTTGTGGTATTCTCGGCGATTCCATTCACCGCCGTGAAAGCCATAGCCAATAGCGCTCTCGGAGAGTCGCTGCAGCGGCGATTGGAGGAGAGGAAGAAAGTTGCGGTTGAGAATTCTTCCAGGTTCAGGGCCTTGGCCCAAAATGCTCGAAATCGGAGCTTGTGGTATGGAGAAGAGCGTCCCCGCTGGCTTGGTCCTATCCCGTATGATTATCCGGCATATCTTACTGGAGAACTACCTGGGGATTATGGTTTTGATGTTGTAGGTCTGAGCAAGGATCCGGTGGCTTTCCAAAGATATTTTAACTTTGAAATACTCCATGCGCGTTGGGCCATGCTAGCTGCCTTTGGTGCTTTGGTTCCAGAAATTTTAGACCTGTTAGGAGCCTTTCACTTTGTTGAGCCTGTATGGTGGCGAGTTGGCTATTCAAAGCTTAAGGGAGATACACTGGACTACCTTGGCATCCCAGGACTCCACGTAGCTGGAAGCCAAGGAGTAATTGTCATAGCCATATGCCAAGTCCTCCTGATGGTTGGACCAGAATATGCAAGATATTGTGGCATTGAAGCATTAGAGCCGCTGGGAATCTACTTGCCAGGTGATATTAATTACCCAGGAGGAGAGCTTTTTGATCCCTTGAACCTCTCGAAAGACCCTGTAGCTTTTGAAGAGCTGAAGGTGAAAGAGATAAAGAATGGGCGCCTAGCTATGGTTGCCTGGTTGGGCTTTTACAGTCAAGCAGCCTTGACAGGTAAAGGTCCTGTACAGAACCTACTTGAACACATTTCAGATCCCCTACACAATAATCTGTTGTCAATACTCAAACTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

327

Amino Acids

36.14

Weight (kDa)

8.32

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 122 - 297 8.2e-43 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 849
AccII CGCG 1 cut(s) 475
AciI CCGC 5 cut(s) 180, 226, 254, 334, 728
AclWI GGATC 4 cut(s) 422, 435, 776, 935
AcsI RAATTY 2 cut(s) 262, 516
AcuI CTGAAG 1 cut(s) 845
AcyI GRCGYC 1 cut(s) 850
AfaI GTAC 1 cut(s) 915
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 3 cut(s) 276, 679, 859
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 6 cut(s) 461, 579, 716, 790, 818, 929
AjnI CCWGG 6 cut(s) 269, 388, 616, 745, 763, 866
AleI CACNNNNGTG 1 cut(s) 182
AlwI GGATC 4 cut(s) 422, 435, 776, 935
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 3 cut(s) 279, 285, 480
ApeKI GCWGC 4 cut(s) 220, 223, 491, 890
ApoI RAATTY 2 cut(s) 262, 516
AseI ATTAAT 1 cut(s) 756
AspLEI GCGC 3 cut(s) 206, 475, 852
AspS9I GGNCC 6 cut(s) 279, 286, 344, 480, 686, 908
AsuHPI GGTGA 3 cut(s) 169, 761, 841
AsuNHI GCTAGC 1 cut(s) 487
AvaII GGWCC 3 cut(s) 344, 686, 908
BamHI GGATCC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 849
BbvI GCAGC 4 cut(s) 207, 235, 478, 902
BccI CCATC 2 cut(s) 70, 673
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 6 cut(s) 271, 390, 618, 747, 765, 868
BfaI CTAG 2 cut(s) 488, 854
BfmI CTRYAG 2 cut(s) 221, 807
BfoI RGCGCY 2 cut(s) 207, 853
BfrI CTTAAG 1 cut(s) 584
BisI GCNGC 6 cut(s) 221, 224, 227, 492, 728, 891
BlsI GCNGC 6 cut(s) 222, 225, 228, 493, 729, 892
Bme1390I CCNGG 6 cut(s) 271, 390, 618, 747, 765, 868
Bme18I GGWCC 3 cut(s) 344, 686, 908
BmgT120I GGNCC 6 cut(s) 279, 286, 344, 480, 686, 908
BmiI GGNNCC 4 cut(s) 429, 510, 535, 851
BmrFI CCNGG 6 cut(s) 271, 390, 618, 747, 765, 868
BmsI GCATC 1 cut(s) 621
BmtI GCTAGC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 628
BsaHI GRCGYC 1 cut(s) 850
BsaJI CCNNGG 6 cut(s) 282, 389, 607, 616, 640, 763
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 636, 666
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 679, 859
Bse1I ACTGG 2 cut(s) 382, 603
BseBI CCWGG 6 cut(s) 271, 390, 618, 747, 765, 868
BseDI CCNNGG 6 cut(s) 282, 389, 607, 616, 640, 763
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 3 cut(s) 276, 679, 859
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 2 cut(s) 382, 603
BseRI GAGGAG 2 cut(s) 251, 783
BseXI GCAGC 4 cut(s) 207, 235, 478, 902
BseYI CCCAGC 1 cut(s) 730
Bsh1236I CGCG 1 cut(s) 475
BshFI GGCC 3 cut(s) 281, 287, 482
BshNI GGYRCC 1 cut(s) 849
BsiSI CCGG 2 cut(s) 365, 431
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 3 cut(s) 276, 679, 859
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 3 cut(s) 281, 287, 482
Bsp1407I TGTACA 1 cut(s) 913
Bsp143I GATC 3 cut(s) 427, 781, 940
BspACI CCGC 5 cut(s) 180, 226, 254, 334, 728
BspANI GGCC 3 cut(s) 281, 287, 482
BspCNI CTCAG 1 cut(s) 411
BspFNI CGCG 1 cut(s) 475
BspLI GGNNCC 4 cut(s) 429, 510, 535, 851
BspMAI CTGCAG 1 cut(s) 225
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 4 cut(s) 422, 435, 776, 935
BspQI GCTCTTC 2 cut(s) 318, 813
BspT107I GGYRCC 1 cut(s) 849
BspTI CTTAAG 1 cut(s) 584
BsrGI TGTACA 1 cut(s) 913
BsrI ACTGG 2 cut(s) 382, 603
BssECI CCNNGG 6 cut(s) 282, 389, 607, 616, 640, 763
BssMI GATC 3 cut(s) 427, 781, 940
BssNI GRCGYC 1 cut(s) 850
BssT1I CCWWGG 3 cut(s) 282, 607, 640
Bst2UI CCWGG 6 cut(s) 271, 390, 618, 747, 765, 868
Bst4CI ACNGT 1 cut(s) 884
Bst6I CTCTTC 2 cut(s) 318, 813
BstACI GRCGYC 1 cut(s) 850
BstAFI CTTAAG 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 913
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 338, 489
BstDEI CTNAG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 612
BstFNI CGCG 1 cut(s) 475
BstH2I RGCGCY 2 cut(s) 207, 853
BstHHI GCGC 3 cut(s) 206, 475, 852
BstKTI GATC 3 cut(s) 430, 784, 943
BstMBI GATC 3 cut(s) 427, 781, 940
BstMWI GCNNNNNNNGC 8 cut(s) 188, 203, 226, 293, 479, 488, 500, 863
BstNI CCWGG 6 cut(s) 271, 390, 618, 747, 765, 868
BstSCI CCNGG 6 cut(s) 269, 388, 616, 745, 763, 866
BstSFI CTRYAG 2 cut(s) 221, 807
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 4 cut(s) 207, 235, 478, 902
BstX2I RGATCY 2 cut(s) 427, 940
BstXI CCANNNNNNTGG 1 cut(s) 632
BstYI RGATCY 2 cut(s) 427, 940
BsuRI GGCC 3 cut(s) 281, 287, 482
BtsCI GGATG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 596
Cac8I GCNNGC 2 cut(s) 338, 489
CfoI GCGC 3 cut(s) 206, 475, 852
Cfr13I GGNCC 6 cut(s) 279, 286, 344, 480, 686, 908
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 914
CviAII CATG 3 cut(s) 132, 470, 484
CviQI GTAC 1 cut(s) 914
DdeI CTNAG 1 cut(s) 419
DinI GGCGCC 1 cut(s) 851
DpnI GATC 3 cut(s) 429, 783, 942
DpnII GATC 3 cut(s) 427, 781, 940
Eam1104I CTCTTC 2 cut(s) 318, 813
EarI CTCTTC 2 cut(s) 318, 813
Eco130I CCWWGG 3 cut(s) 282, 607, 640
Eco47I GGWCC 3 cut(s) 344, 686, 908
Eco47III AGCGCT 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 845
EcoO109I RGGNCCY 2 cut(s) 279, 908
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 6 cut(s) 269, 388, 616, 745, 763, 866
EcoT14I CCWWGG 3 cut(s) 282, 607, 640
EgeI GGCGCC 1 cut(s) 851
EheI GGCGCC 1 cut(s) 851
ErhI CCWWGG 3 cut(s) 282, 607, 640
FaeI CATG 3 cut(s) 135, 473, 487
FaqI GGGAC 1 cut(s) 315
FatI CATG 3 cut(s) 131, 469, 483
FauI CCCGC 1 cut(s) 341
FauNDI CATATG 1 cut(s) 662
Fnu4HI GCNGC 6 cut(s) 221, 224, 227, 492, 728, 891
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 6 cut(s) 221, 224, 227, 492, 728, 891
FspBI CTAG 2 cut(s) 488, 854
GlaI GCGC 3 cut(s) 205, 474, 851
GluI GCNGC 6 cut(s) 221, 224, 227, 492, 728, 891
GsaI CCCAGC 1 cut(s) 734
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 2 cut(s) 207, 853
HaeIII GGCC 3 cut(s) 281, 287, 482
HapII CCGG 2 cut(s) 365, 431
HgaI GACGC 1 cut(s) 317
HhaI GCGC 3 cut(s) 206, 475, 852
Hin1I GRCGYC 1 cut(s) 850
Hin1II CATG 3 cut(s) 135, 473, 487
Hin6I GCGC 3 cut(s) 204, 473, 850
HinP1I GCGC 3 cut(s) 204, 473, 850
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 4 cut(s) 169, 215, 621, 735
HpaII CCGG 2 cut(s) 365, 431
HphI GGTGA 3 cut(s) 169, 761, 841
Hpy188I TCNGA 4 cut(s) 212, 306, 420, 940
Hpy188III TCNNGA 3 cut(s) 512, 676, 796
Hpy99I CGWCG 2 cut(s) 111, 114
HpyAV CCTTC 3 cut(s) 20, 39, 820
HpyCH4III ACNGT 1 cut(s) 884
HpyCH4IV ACGT 2 cut(s) 106, 627
HpyCH4V TGCA 3 cut(s) 123, 223, 698
HpyF10VI GCNNNNNNNGC 8 cut(s) 188, 203, 226, 293, 479, 488, 500, 863
HpyF3I CTNAG 1 cut(s) 419
HpySE526I ACGT 2 cut(s) 106, 627
Hsp92I GRCGYC 1 cut(s) 850
Hsp92II CATG 3 cut(s) 135, 473, 487
HspAI GCGC 3 cut(s) 204, 473, 850
KasI GGCGCC 1 cut(s) 849
Kzo9I GATC 3 cut(s) 427, 781, 940
LguI GCTCTTC 2 cut(s) 318, 813
LmnI GCTCC 2 cut(s) 306, 533
Lsp1109I GCAGC 4 cut(s) 207, 235, 478, 902
LweI GCATC 1 cut(s) 621
MaeI CTAG 2 cut(s) 488, 854
MaeII ACGT 2 cut(s) 106, 627
MalI GATC 3 cut(s) 429, 783, 942
MboI GATC 3 cut(s) 427, 781, 940
MboII GAAGA 4 cut(s) 256, 258, 335, 830
MflI RGATCY 2 cut(s) 427, 940
MluCI AATT 4 cut(s) 262, 516, 648, 757
Mly113I GGCGCC 1 cut(s) 850
MlyI GAGTC 2 cut(s) 224, 615
MmeI TCCRAC 1 cut(s) 664
MseI TTAA 3 cut(s) 453, 585, 756
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 3 cut(s) 226, 336, 730
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 2 cut(s) 365, 431
MspR9I CCNGG 6 cut(s) 271, 390, 618, 747, 765, 868
MvaI CCWGG 6 cut(s) 271, 390, 618, 747, 765, 868
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 8 cut(s) 188, 203, 226, 293, 479, 488, 500, 863
NarI GGCGCC 1 cut(s) 850
NdeI CATATG 1 cut(s) 662
NdeII GATC 3 cut(s) 427, 781, 940
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 3 cut(s) 135, 473, 487
NlaIV GGNNCC 4 cut(s) 429, 510, 535, 851
NmeAIII GCCGAG 1 cut(s) 143
OliI CACNNNNGTG 1 cut(s) 182
PciSI GCTCTTC 2 cut(s) 318, 813
PfeI GAWTC 2 cut(s) 169, 735
PkrI GCNGC 6 cut(s) 222, 225, 228, 493, 729, 892
PleI GAGTC 2 cut(s) 223, 615
PluTI GGCGCC 1 cut(s) 853
PpsI GAGTC 2 cut(s) 223, 615
Ppu21I YACGTR 1 cut(s) 628
PpuMI RGGWCCY 1 cut(s) 908
PshBI ATTAAT 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 908
Psp6I CCWGG 6 cut(s) 269, 388, 616, 745, 763, 866
PspFI CCCAGC 1 cut(s) 730
PspGI CCWGG 6 cut(s) 269, 388, 616, 745, 763, 866
PspN4I GGNNCC 4 cut(s) 429, 510, 535, 851
PspPI GGNCC 6 cut(s) 279, 286, 344, 480, 686, 908
PspPPI RGGWCCY 1 cut(s) 908
PstI CTGCAG 1 cut(s) 225
PsuI RGATCY 2 cut(s) 427, 940
RsaI GTAC 1 cut(s) 915
RsaNI GTAC 1 cut(s) 914
RseI CAYNNNNRTG 1 cut(s) 182
SapI GCTCTTC 2 cut(s) 318, 813
SaqAI TTAA 3 cut(s) 453, 585, 756
SatI GCNGC 6 cut(s) 221, 224, 227, 492, 728, 891
Sau3AI GATC 3 cut(s) 427, 781, 940
Sau96I GGNCC 6 cut(s) 279, 286, 344, 480, 686, 908
SchI GAGTC 2 cut(s) 224, 615
ScrFI CCNGG 6 cut(s) 271, 390, 618, 747, 765, 868
SfaNI GCATC 1 cut(s) 621
SfcI CTRYAG 2 cut(s) 221, 807
SfoI GGCGCC 1 cut(s) 851
SinI GGWCC 3 cut(s) 344, 686, 908
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 4 cut(s) 262, 516, 648, 757
SsiI CCGC 5 cut(s) 180, 226, 254, 334, 728
SspDI GGCGCC 1 cut(s) 849
SspMI CTAG 2 cut(s) 488, 854
StyD4I CCNGG 6 cut(s) 269, 388, 616, 745, 763, 866
StyI CCWWGG 3 cut(s) 282, 607, 640
TaaI ACNGT 1 cut(s) 884
TaiI ACGT 2 cut(s) 109, 630
TaqI TCGA 2 cut(s) 298, 797
TasI AATT 4 cut(s) 262, 516, 648, 757
TatI WGTACW 1 cut(s) 913
TauI GCSGC 2 cut(s) 229, 730
TfiI GAWTC 2 cut(s) 169, 735
Tru1I TTAA 3 cut(s) 453, 585, 756
Tru9I TTAA 3 cut(s) 453, 585, 756
TscAI CASTG 1 cut(s) 603
TseI GCWGC 4 cut(s) 220, 223, 491, 890
TspDTI ATGAA 2 cut(s) 37, 120
TspRI CASTG 1 cut(s) 603
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 3 cut(s) 344, 686, 908
VspI ATTAAT 1 cut(s) 756
XapI RAATTY 2 cut(s) 262, 516
XspI CTAG 2 cut(s) 488, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.