Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

47563112 .. 47563662

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTATGCTTGTCTCAAAGATCTGTTAGATTGCCTGGTTCTTAAGGAACTGAAATCCCATTTTGAAATACCGGGTGGCCCTCAAGTAGAATCCCTGAACTACCTGACTGCTGGAATGAATCGAAGAGGAGCGGCTTTGCTTTTCTATCAAACTTGTGTTCTTGCGACTCGTGATTTTGTAAAAGTTAAACAAAATGCCCCTTACGAGGATATTCTCATGACTAGAGGACCAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

79

Amino Acids

8.94

Weight (kDa)

8.5

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	27 - 79	1.3e-20	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	131
AciI	CCGC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	77, 227
AsuC2I	CCSGG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	41
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	35, 72
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	77, 227
BmrFI	CCNGG	2 cut(s)	35, 72
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	131
BssMI	GATC	1 cut(s)	19
BssSI	CACGAG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	118
BstAFI	CTTAAG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	33, 70
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	77, 227
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	2 cut(s)	78, 134
CviKI_1	RGCY	2 cut(s)	78, 134
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	220
FaiI	YATR	2 cut(s)	6, 218
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	3 cut(s)	89, 118, 166
HpaII	CCGG	1 cut(s)	71
Hpy188III	TCNNGA	2 cut(s)	170, 217
Hsp92II	CATG	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	20, 47, 84, 96, 107, 116
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	21
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	135
MflI	RGATCY	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	90, 119, 199, 218
MseI	TTAA	2 cut(s)	42, 186
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	35, 72
MvaI	CCWGG	1 cut(s)	35
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	220
PagI	TCATGA	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	89, 118
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	77, 227
PsuI	RGATCY	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	42, 186
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	2 cut(s)	77, 227
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	35, 72
SetI	ASST	1 cut(s)	105
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	41, 81
SmoI	CTYRAG	2 cut(s)	41, 81
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	33, 70
TaqI	TCGA	1 cut(s)	121
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	2 cut(s)	89, 118
Tru1I	TTAA	2 cut(s)	42, 186
Tru9I	TTAA	2 cut(s)	42, 186
TspDTI	ATGAA	1 cut(s)	131
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	227
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.