Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

1624206 .. 1629269

Gene Structure 5064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGTTGAGACTGGAGAGTTTGATAGTAACAGTGTGGGGACCAGCGACGCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACATTGCACGCGAAGATCAACCGGAAGAAACTAGATAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAATCCGTCGGTTCCGATGGCTCTTAGACTCTCCGGGATTCTTATGGGTGGTGTTGTGATTGTTTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCTTTCTGGTTGAAATTAATGGAGCTTGGCGCACAAAATCTGTTCCGGATCCCACTTTACTACCTAAAGGAAAAACCCATGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGAACAGACTCGTAATGTTCCTAAATTTGGCAATTACATGGATTTTCAGCAGACTTTTATTTCCATGCGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCAGTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGACCAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACACAGATGAACTCCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACCTCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCGCCAGGAGCAACAGGAGAATCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGAGGAACACGATAGACCACAACCAGCGAAAAAGAGAGCAAGAAAGACAGCTACTTCAGCGATGGATTATGAGCAAACTATTATCGCTGGTCATGTTTACCAGTCATGGCTCCAGGATACTTCTGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGACATGGAAAGTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAGGACAGTTCTTACCCGCCTCAGCTTTACCAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATCATCTGAATCTCGACATCCTGATCTCCGTGCGGAACAATCTCCAGGGTTTGTTCAGGAGAGAATGCATAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCTTGATAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAGCATGATGGCTGGATCTCGAGCAAGCCCTGAAACTATTAACCGCCAGGCTGCTGATATTAATGTCACGCCATTCTATTCTGGAGATGATGTGAGATCCATGCCTAGTACACCATCCGCACGTGGAGCAGCTTCAATTAACAACATAGAGATCAGCTCTAAAAGTCGCATGCCCAATAGAAAAAGACCAAATTCCTCACCAAGAAGAGGACTCGAACCAGTGGCGGAAGAGAGACCGTGGGAGCACCGTGAATATGAGTTTGAGTTTTCAATGTTACCTGAAAAACGCTTCACAGCCGATAAAGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGACGAGATGATAACAGATAGCATCAAAAGTCACCTGAAGACACACTTTGAAACACCTGGAGCTCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAAACTCTTCTTCCAATCCTGTGTGTTAGCTACTCGCGGAGTCATCAAGGTAAACCAAGCAGAGCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

627

Amino Acids

71.23

Weight (kDa)

5.85

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 102	5.1e-32	N terminus of Rad21 / Rec8 like protein
Rad21_Rec8	PF04824	564 - 617	1.5e-21	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	104, 1815
AccIII	TCCGGA	2 cut(s)	313, 1263
AciI	CCGC	9 cut(s)	90, 472, 1067, 1151, 1251, 1342, 1416, 1523, 1815
AclWI	GGATC	4 cut(s)	311, 324, 1321, 1389
AcoI	YGGCCR	2 cut(s)	87, 995
AcsI	RAATTY	2 cut(s)	428, 1489
AcuI	CTGAAG	3 cut(s)	864, 1275, 1715
AcvI	CACGTG	1 cut(s)	1421
AfaI	GTAC	2 cut(s)	1276, 1408
AfiI	CCNNNNNNNGG	4 cut(s)	351, 431, 668, 1505
AflIII	ACRYGT	1 cut(s)	1878
AjnI	CCWGG	6 cut(s)	350, 756, 936, 1162, 1344, 1714
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
Alw21I	GWGCWC	2 cut(s)	1545, 1723
Alw26I	GTCTC	1 cut(s)	1525
AlwI	GGATC	4 cut(s)	311, 324, 1321, 1389
Ama87I	CYCGRG	2 cut(s)	503, 1317
Aor13HI	TCCGGA	2 cut(s)	313, 1263
AoxI	GGCC	2 cut(s)	87, 995
ApeKI	GCWGC	4 cut(s)	1349, 1427, 1772, 1775
ApoI	RAATTY	2 cut(s)	428, 1489
AseI	ATTAAT	2 cut(s)	285, 1359
AspLEI	GCGC	4 cut(s)	300, 674, 756, 1218
AspS9I	GGNCC	2 cut(s)	38, 1871
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	3 cut(s)	693, 1488, 1682
AvaI	CYCGRG	2 cut(s)	503, 1317
AvaII	GGWCC	2 cut(s)	38, 1871
BamHI	GGATCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	1723
BbrPI	CACGTG	1 cut(s)	1421
BbsI	GAAGAC	1 cut(s)	1703
Bbv12I	GWGCWC	2 cut(s)	1545, 1723
BbvCI	CCTCAGC	2 cut(s)	750, 1071
BbvI	GCAGC	4 cut(s)	1336, 1439, 1759, 1787
BciT130I	CCWGG	6 cut(s)	352, 758, 938, 1164, 1346, 1716
BciVI	GTATCC	1 cut(s)	934
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	1525
BfaI	CTAG	3 cut(s)	53, 125, 1404
BfmI	CTRYAG	2 cut(s)	958, 1773
BfoI	RGCGCY	2 cut(s)	675, 757
BfuI	GTATCC	1 cut(s)	934
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	5 cut(s)	90, 1350, 1428, 1773, 1776
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	5 cut(s)	91, 1351, 1429, 1774, 1777
Bme1390I	CCNGG	7 cut(s)	199, 352, 758, 938, 1164, 1346, 1716
Bme18I	GGWCC	2 cut(s)	38, 1871
BmeT110I	CYCGRG	2 cut(s)	503, 1317
BmgT120I	GGNCC	2 cut(s)	38, 1871
BmiI	GGNNCC	5 cut(s)	39, 177, 318, 935, 1873
BmrFI	CCNGG	7 cut(s)	199, 352, 758, 938, 1164, 1346, 1716
BmrI	ACTGGG	1 cut(s)	1287
BmsI	GCATC	3 cut(s)	532, 1631, 1689
BmuI	ACTGGG	1 cut(s)	1287
BpiI	GAAGAC	1 cut(s)	1703
BplI	GAGNNNNNCTC	2 cut(s)	1439, 1471
BpmI	CTGGAG	5 cut(s)	32, 920, 1146, 1401, 1737
Bpu10I	CCTNAGC	2 cut(s)	750, 1071
Bpu1102I	GCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	2 cut(s)	1086, 1710
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	1421
BsaBI	GATNNNNATC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	1525
BsaJI	CCNNGG	2 cut(s)	1163, 1535
BsaWI	WCCGGW	4 cut(s)	114, 313, 817, 1263
BsaXI	ACNNNNNCTCC	4 cut(s)	1214, 1244, 1374, 1404
Bsc4I	CCNNNNNNNGG	4 cut(s)	351, 431, 668, 1505
Bse1I	ACTGG	5 cut(s)	15, 925, 1282, 1517, 1643
Bse3DI	GCAATG	3 cut(s)	95, 368, 1860
Bse8I	GATNNNNATC	1 cut(s)	264
BseAI	TCCGGA	2 cut(s)	313, 1263
BseBI	CCWGG	6 cut(s)	352, 758, 938, 1164, 1346, 1716
BseDI	CCNNGG	2 cut(s)	1163, 1535
BseGI	GGATG	4 cut(s)	90, 693, 1135, 1412
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	4 cut(s)	351, 431, 668, 1505
BseMI	GCAATG	3 cut(s)	95, 368, 1860
BseMII	CTCAG	4 cut(s)	366, 764, 783, 1085
BseNI	ACTGG	5 cut(s)	15, 925, 1282, 1517, 1643
BseRI	GAGGAG	1 cut(s)	1713
BseXI	GCAGC	4 cut(s)	1336, 1439, 1759, 1787
Bsh1236I	CGCG	2 cut(s)	104, 1815
BshFI	GGCC	2 cut(s)	89, 997
BsiHKAI	GWGCWC	2 cut(s)	1545, 1723
BsiHKCI	CYCGRG	2 cut(s)	503, 1317
BsiSI	CCGG	6 cut(s)	115, 198, 314, 818, 994, 1264
BslFI	GGGAC	4 cut(s)	51, 794, 1233, 1865
BslI	CCNNNNNNNGG	4 cut(s)	351, 431, 668, 1505
BsmAI	GTCTC	1 cut(s)	1525
BsmFI	GGGAC	4 cut(s)	51, 794, 1233, 1865
BsmI	GAATGC	1 cut(s)	1188
BsnI	GGCC	2 cut(s)	89, 997
Bso31I	GGTCTC	1 cut(s)	1525
BsoBI	CYCGRG	2 cut(s)	503, 1317
Bsp1286I	GDGCHC	2 cut(s)	1545, 1723
Bsp13I	TCCGGA	2 cut(s)	313, 1263
Bsp143I	GATC	8 cut(s)	108, 316, 514, 604, 1141, 1313, 1394, 1449
Bsp1720I	GCTNAGC	1 cut(s)	792
BspACI	CCGC	9 cut(s)	90, 472, 1067, 1151, 1251, 1342, 1416, 1523, 1815
BspANI	GGCC	2 cut(s)	89, 997
BspCNI	CTCAG	4 cut(s)	367, 763, 784, 1084
BspEI	TCCGGA	2 cut(s)	313, 1263
BspFNI	CGCG	2 cut(s)	104, 1815
BspHI	TCATGA	2 cut(s)	715, 1210
BspLI	GGNNCC	5 cut(s)	39, 177, 318, 935, 1873
BspMAI	CTGCAG	1 cut(s)	1777
BspPI	GGATC	4 cut(s)	311, 324, 1321, 1389
BspTNI	GGTCTC	1 cut(s)	1525
BsrDI	GCAATG	3 cut(s)	95, 368, 1860
BsrI	ACTGG	5 cut(s)	15, 925, 1282, 1517, 1643
BssECI	CCNNGG	2 cut(s)	1163, 1535
BssMI	GATC	8 cut(s)	108, 316, 514, 604, 1141, 1313, 1394, 1449
Bst2UI	CCWGG	6 cut(s)	352, 758, 938, 1164, 1346, 1716
Bst4CI	ACNGT	5 cut(s)	31, 1058, 1270, 1536, 1547
Bst6I	CTCTTC	4 cut(s)	150, 1498, 1521, 1790
BstBAI	YACGTR	1 cut(s)	1421
BstC8I	GCNNGC	4 cut(s)	102, 1324, 1469, 1749
BstDEI	CTNAG	5 cut(s)	188, 375, 750, 792, 1071
BstDSI	CCRYGG	1 cut(s)	1535
BstF5I	GGATG	4 cut(s)	90, 693, 1135, 1412
BstFNI	CGCG	2 cut(s)	104, 1815
BstH2I	RGCGCY	2 cut(s)	675, 757
BstHHI	GCGC	4 cut(s)	300, 674, 756, 1218
BstKTI	GATC	8 cut(s)	111, 319, 517, 607, 1144, 1316, 1397, 1452
BstMAI	GTCTC	1 cut(s)	1525
BstMBI	GATC	8 cut(s)	108, 316, 514, 604, 1141, 1313, 1394, 1449
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 753, 760, 881, 1081, 1424
BstNI	CCWGG	6 cut(s)	352, 758, 938, 1164, 1346, 1716
BstNSI	RCATGY	2 cut(s)	1471, 1882
BstSCI	CCNGG	7 cut(s)	197, 350, 756, 936, 1162, 1344, 1714
BstSFI	CTRYAG	2 cut(s)	958, 1773
BstUI	CGCG	2 cut(s)	104, 1815
BstV1I	GCAGC	4 cut(s)	1336, 1439, 1759, 1787
BstV2I	GAAGAC	1 cut(s)	1703
BstX2I	RGATCY	4 cut(s)	316, 514, 1313, 1394
BstYI	RGATCY	4 cut(s)	316, 514, 1313, 1394
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	2 cut(s)	89, 997
BtgI	CCRYGG	1 cut(s)	1535
BtgZI	GCGATG	1 cut(s)	899
BtsCI	GGATG	4 cut(s)	90, 693, 1135, 1412
BtsI	GCAGTG	1 cut(s)	1225
BtsIMutI	CAGTG	4 cut(s)	36, 1225, 1524, 1650
Cac8I	GCNNGC	4 cut(s)	102, 1324, 1469, 1749
CciI	TCATGA	2 cut(s)	715, 1210
CfoI	GCGC	4 cut(s)	300, 674, 756, 1218
Cfr13I	GGNCC	2 cut(s)	38, 1871
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	1275, 1407
CviQI	GTAC	2 cut(s)	1275, 1407
DdeI	CTNAG	5 cut(s)	188, 375, 750, 792, 1071
DpnI	GATC	8 cut(s)	110, 318, 516, 606, 1143, 1315, 1396, 1451
DpnII	GATC	8 cut(s)	108, 316, 514, 604, 1141, 1313, 1394, 1449
EaeI	YGGCCR	2 cut(s)	87, 995
Eam1104I	CTCTTC	4 cut(s)	150, 1498, 1521, 1790
EarI	CTCTTC	4 cut(s)	150, 1498, 1521, 1790
EciI	GGCGGA	1 cut(s)	1538
Ecl136II	GAGCTC	1 cut(s)	1721
Eco24I	GRGCYC	1 cut(s)	1723
Eco31I	GGTCTC	1 cut(s)	1525
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	38, 1871
Eco53kI	GAGCTC	1 cut(s)	1721
Eco57I	CTGAAG	3 cut(s)	864, 1275, 1715
Eco72I	CACGTG	1 cut(s)	1421
Eco88I	CYCGRG	2 cut(s)	503, 1317
EcoICRI	GAGCTC	1 cut(s)	1721
EcoO109I	RGGNCCY	1 cut(s)	1871
EcoRII	CCWGG	6 cut(s)	350, 756, 936, 1162, 1344, 1714
EcoRV	GATATC	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	1188
EcoT38I	GRGCYC	1 cut(s)	1723
FalI	AAGNNNNNCTT	2 cut(s)	1688, 1720
FaqI	GGGAC	4 cut(s)	51, 794, 1233, 1865
FauI	CCCGC	2 cut(s)	1074, 1258
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	5 cut(s)	90, 1350, 1428, 1773, 1776
FokI	GGATG	4 cut(s)	97, 680, 1122, 1399
FriOI	GRGCYC	1 cut(s)	1723
Fsp4HI	GCNGC	5 cut(s)	90, 1350, 1428, 1773, 1776
FspBI	CTAG	3 cut(s)	53, 125, 1404
GlaI	GCGC	4 cut(s)	299, 673, 755, 1217
GluI	GCNGC	5 cut(s)	90, 1350, 1428, 1773, 1776
GsuI	CTGGAG	5 cut(s)	32, 920, 1146, 1401, 1737
HaeII	RGCGCY	2 cut(s)	675, 757
HaeIII	GGCC	2 cut(s)	89, 997
HapII	CCGG	6 cut(s)	115, 198, 314, 818, 994, 1264
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	4 cut(s)	300, 674, 756, 1218
Hin6I	GCGC	4 cut(s)	298, 672, 754, 1216
HinP1I	GCGC	4 cut(s)	298, 672, 754, 1216
HincII	GTYRAC	2 cut(s)	493, 736
HindII	GTYRAC	2 cut(s)	493, 736
HpaI	GTTAAC	1 cut(s)	493
HpaII	CCGG	6 cut(s)	115, 198, 314, 818, 994, 1264
HphI	GGTGA	3 cut(s)	693, 1488, 1682
Hpy166II	GTNNAC	5 cut(s)	493, 736, 922, 1409, 1831
Hpy188I	TCNGA	5 cut(s)	78, 180, 949, 1126, 1660
Hpy8I	GTNNAC	5 cut(s)	493, 736, 922, 1409, 1831
Hpy99I	CGWCG	2 cut(s)	49, 175
HpyAV	CCTTC	3 cut(s)	623, 662, 722
HpyCH4III	ACNGT	5 cut(s)	31, 1058, 1270, 1536, 1547
HpyCH4IV	ACGT	2 cut(s)	1018, 1420
HpyCH4V	TGCA	6 cut(s)	100, 1186, 1622, 1650, 1775, 1865
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 753, 760, 881, 1081, 1424
HpyF3I	CTNAG	5 cut(s)	188, 375, 750, 792, 1071
HpySE526I	ACGT	2 cut(s)	1018, 1420
HspAI	GCGC	4 cut(s)	298, 672, 754, 1216
Kpn2I	TCCGGA	2 cut(s)	313, 1263
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	8 cut(s)	108, 316, 514, 604, 1141, 1313, 1394, 1449
Lsp1109I	GCAGC	4 cut(s)	1336, 1439, 1759, 1787
LweI	GCATC	3 cut(s)	532, 1631, 1689
MaeI	CTAG	3 cut(s)	53, 125, 1404
MaeII	ACGT	2 cut(s)	1018, 1420
MaeIII	GTNAC	6 cut(s)	25, 364, 1220, 1363, 1572, 1688
MalI	GATC	8 cut(s)	110, 318, 516, 606, 1143, 1315, 1396, 1451
MboI	GATC	8 cut(s)	108, 316, 514, 604, 1141, 1313, 1394, 1449
MflI	RGATCY	4 cut(s)	316, 514, 1313, 1394
MhlI	GDGCHC	2 cut(s)	1545, 1723
MluCI	AATT	5 cut(s)	282, 428, 436, 1434, 1489
MlyI	GAGTC	6 cut(s)	186, 406, 741, 1503, 1627, 1827
MmeI	TCCRAC	1 cut(s)	1735
Mph1103I	ATGCAT	1 cut(s)	1188
MroI	TCCGGA	2 cut(s)	313, 1263
MseI	TTAA	7 cut(s)	264, 285, 492, 1338, 1359, 1437, 1740
MspI	CCGG	6 cut(s)	115, 198, 314, 818, 994, 1264
MspR9I	CCNGG	7 cut(s)	199, 352, 758, 938, 1164, 1346, 1716
Mva1269I	GAATGC	1 cut(s)	1188
MvaI	CCWGG	6 cut(s)	352, 758, 938, 1164, 1346, 1716
MvnI	CGCG	2 cut(s)	104, 1815
MwoI	GCNNNNNNNGC	6 cut(s)	62, 753, 760, 881, 1081, 1424
NciI	CCSGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	8 cut(s)	108, 316, 514, 604, 1141, 1313, 1394, 1449
NlaIV	GGNNCC	5 cut(s)	39, 177, 318, 935, 1873
NmeAIII	GCCGAG	1 cut(s)	571
NmuCI	GTSAC	3 cut(s)	1220, 1363, 1688
NsiI	ATGCAT	1 cut(s)	1188
NspI	RCATGY	2 cut(s)	1471, 1882
PaeI	GCATGC	1 cut(s)	1471
PaeR7I	CTCGAG	1 cut(s)	1317
PagI	TCATGA	2 cut(s)	715, 1210
PciI	ACATGT	1 cut(s)	1878
PctI	GAATGC	1 cut(s)	1188
PfeI	GAWTC	6 cut(s)	166, 202, 482, 772, 1127, 1733
PfoI	TCCNGGA	2 cut(s)	197, 936
PkrI	GCNGC	5 cut(s)	91, 1351, 1429, 1774, 1777
PleI	GAGTC	6 cut(s)	186, 406, 740, 1503, 1627, 1826
PmaCI	CACGTG	1 cut(s)	1421
PmlI	CACGTG	1 cut(s)	1421
PpsI	GAGTC	6 cut(s)	186, 406, 740, 1503, 1627, 1826
Ppu21I	YACGTR	1 cut(s)	1421
PpuMI	RGGWCCY	1 cut(s)	1871
PscI	ACATGT	1 cut(s)	1878
PshBI	ATTAAT	2 cut(s)	285, 1359
Psp124BI	GAGCTC	1 cut(s)	1723
Psp5II	RGGWCCY	1 cut(s)	1871
Psp6I	CCWGG	6 cut(s)	350, 756, 936, 1162, 1344, 1714
PspCI	CACGTG	1 cut(s)	1421
PspGI	CCWGG	6 cut(s)	350, 756, 936, 1162, 1344, 1714
PspN4I	GGNNCC	5 cut(s)	39, 177, 318, 935, 1873
PspPI	GGNCC	2 cut(s)	38, 1871
PspPPI	RGGWCCY	1 cut(s)	1871
PsrI	GAACNNNNNNTAC	2 cut(s)	798, 830
PstI	CTGCAG	1 cut(s)	1777
PsuI	RGATCY	4 cut(s)	316, 514, 1313, 1394
RsaI	GTAC	2 cut(s)	1276, 1408
RsaNI	GTAC	2 cut(s)	1275, 1407
SacI	GAGCTC	1 cut(s)	1723
SaqAI	TTAA	7 cut(s)	264, 285, 492, 1338, 1359, 1437, 1740
SatI	GCNGC	5 cut(s)	90, 1350, 1428, 1773, 1776
Sau3AI	GATC	8 cut(s)	108, 316, 514, 604, 1141, 1313, 1394, 1449
Sau96I	GGNCC	2 cut(s)	38, 1871
SchI	GAGTC	6 cut(s)	186, 406, 741, 1503, 1627, 1827
ScrFI	CCNGG	7 cut(s)	199, 352, 758, 938, 1164, 1346, 1716
SduI	GDGCHC	2 cut(s)	1545, 1723
SfaNI	GCATC	3 cut(s)	532, 1631, 1689
SfcI	CTRYAG	2 cut(s)	958, 1773
Sfr274I	CTCGAG	1 cut(s)	1317
SinI	GGWCC	2 cut(s)	38, 1871
SlaI	CTCGAG	1 cut(s)	1317
SmlI	CTYRAG	3 cut(s)	1101, 1317, 1725
SmoI	CTYRAG	3 cut(s)	1101, 1317, 1725
SphI	GCATGC	1 cut(s)	1471
Sse9I	AATT	5 cut(s)	282, 428, 436, 1434, 1489
SsiI	CCGC	9 cut(s)	90, 472, 1067, 1151, 1251, 1342, 1416, 1523, 1815
SspMI	CTAG	3 cut(s)	53, 125, 1404
SstI	GAGCTC	1 cut(s)	1723
StyD4I	CCNGG	7 cut(s)	197, 350, 756, 936, 1162, 1344, 1714
TaaI	ACNGT	5 cut(s)	31, 1058, 1270, 1536, 1547
TaiI	ACGT	2 cut(s)	1021, 1423
TaqI	TCGA	8 cut(s)	58, 135, 255, 627, 982, 1132, 1318, 1512
TasI	AATT	5 cut(s)	282, 428, 436, 1434, 1489
TatI	WGTACW	1 cut(s)	1406
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	6 cut(s)	166, 202, 482, 772, 1127, 1733
Tru1I	TTAA	7 cut(s)	264, 285, 492, 1338, 1359, 1437, 1740
Tru9I	TTAA	7 cut(s)	264, 285, 492, 1338, 1359, 1437, 1740
TscAI	CASTG	4 cut(s)	36, 1225, 1524, 1650
TseFI	GTSAC	3 cut(s)	1220, 1363, 1688
TseI	GCWGC	4 cut(s)	1349, 1427, 1772, 1775
Tsp45I	GTSAC	3 cut(s)	1220, 1363, 1688
TspDTI	ATGAA	5 cut(s)	495, 567, 609, 654, 665
TspGWI	ACGGA	4 cut(s)	57, 159, 798, 1136
TspRI	CASTG	4 cut(s)	36, 1225, 1524, 1650
VpaK11BI	GGWCC	2 cut(s)	38, 1871
VspI	ATTAAT	2 cut(s)	285, 1359
XapI	RAATTY	2 cut(s)	428, 1489
XceI	RCATGY	2 cut(s)	1471, 1882
XhoI	CTCGAG	1 cut(s)	1317
XspI	CTAG	3 cut(s)	53, 125, 1404
Zsp2I	ATGCAT	1 cut(s)	1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.