Rmu_co8170892.1_g000001

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8170892.1
Physical Location & Seq
Forward (+)
1 .. 673
673 bp
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UTR
Exon/CDS
Intron
Rmu_co8170892.1_g000001.1.cds

Sequence Viewer

Length: 280 bp
ccaatcttattggcaagagaggagctgatgccaatctggcaacaccaagaaattctggagatgaaagaagatccgtcctgagctcctcatctgggaaggcagttgacaaaaacagttcagtagtcaattcaggacggaaaaggcgttattcatctaaacatagcaacgacggacttgaaccagtgtcggaggataatggatatcatcactctgatccaaacttcaaggtatcatggttatctggaaatggcccaacacctgagcaaggtaaaatttacct

Protein Analysis

93

Amino Acids

10.04

Weight (kDa)

9.63

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 65, 208
AcsI RAATTY 2 cut(s) 51, 272
AfiI CCNNNNNNNGG 2 cut(s) 92, 265
AgsI TTSAA 2 cut(s) 178, 225
AluBI AGCT 2 cut(s) 25, 83
AluI AGCT 2 cut(s) 25, 83
Alw21I GWGCWC 1 cut(s) 85
AlwI GGATC 2 cut(s) 65, 208
AoxI GGCC 1 cut(s) 249
ApoI RAATTY 2 cut(s) 51, 272
AspS9I GGNCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 85
BglI GCCNNNNNGGC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 250
BmsI GCATC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 2 cut(s) 79, 260
BsaBI GATNNNNATC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 265
Bse1I ACTGG 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 92, 265
BseMII CTCAG 2 cut(s) 70, 251
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 2 cut(s) 35, 75
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 85
BslI CCNNNNNNNGG 2 cut(s) 92, 265
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 70, 213
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 2 cut(s) 71, 252
BspPI GGATC 2 cut(s) 65, 208
BsrI ACTGG 1 cut(s) 181
BssMI GATC 2 cut(s) 70, 213
Bst4CI ACNGT 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 79, 260
BstENI CCTNNNNNAGG 1 cut(s) 263
BstKTI GATC 2 cut(s) 73, 216
BstMBI GATC 2 cut(s) 70, 213
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 250
CviAII CATG 1 cut(s) 233
CviJI RGCY 3 cut(s) 25, 83, 251
CviKI_1 RGCY 3 cut(s) 25, 83, 251
DdeI CTNAG 2 cut(s) 79, 260
DpnI GATC 2 cut(s) 72, 215
DpnII GATC 2 cut(s) 70, 213
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 85
Eco32I GATATC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoRV GATATC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 1 cut(s) 236
FaiI YATR 2 cut(s) 161, 234
FatI CATG 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 1 cut(s) 236
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 189, 213
Hpy188III TCNNGA 4 cut(s) 56, 78, 131, 242
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 79, 260
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 2 cut(s) 70, 213
LmnI GCTCC 2 cut(s) 22, 88
LpnPI CCDG 8 cut(s) 22, 41, 77, 91, 116, 194, 227, 272
LweI GCATC 1 cut(s) 18
MalI GATC 2 cut(s) 72, 215
MboI GATC 2 cut(s) 70, 213
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 3 cut(s) 51, 126, 272
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 3 cut(s) 13, 96, 183
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 2 cut(s) 70, 213
NlaIII CATG 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 70
SacI GAGCTC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 70, 213
Sau96I GGNCC 1 cut(s) 250
SduI GDGCHC 1 cut(s) 85
SetI ASST 5 cut(s) 27, 85, 230, 261, 270
SfaNI GCATC 1 cut(s) 18
Sse9I AATT 3 cut(s) 51, 126, 272
SstI GAGCTC 1 cut(s) 85
TaaI ACNGT 1 cut(s) 115
TasI AATT 3 cut(s) 51, 126, 272
TscAI CASTG 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 77, 140
TspGWI ACGGA 3 cut(s) 63, 150, 185
TspRI CASTG 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 263
XapI RAATTY 2 cut(s) 51, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.