Rh7DG440800

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
62632703 .. 62633328
626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG440800.1

Sequence Viewer

Length: 441 bp
ATGCAGGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACCTGCCTCTGTAATGGATAATGACCAAACAATCCATCCTGGACATGTGTACCAATCTTGGCTTCAAGATACTTCAGATATAGTTTCAAGAAGAAGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTCGTTTATTTAAACTTGGAAGTGGAGAAACATATTATCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCTGCATTCACCTTGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATCAAGACCTGGTGACGTATTTAAGCCAATACAGCTACTTTTAG

Protein Analysis

146

Amino Acids

16.99

Weight (kDa)

9.88

Isoelectric Point (pI)

78.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 4 cut(s) 14, 131, 153, 304
AjnI CCWGG 3 cut(s) 103, 382, 405
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 4 cut(s) 227, 284, 298, 432
AluI AGCT 4 cut(s) 227, 284, 298, 432
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 220
AsuHPI GGTGA 4 cut(s) 318, 331, 369, 421
BaeI ACNNNNGTAYC 2 cut(s) 98, 131
BbsI GAAGAC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 108, 373
BciT130I CCWGG 3 cut(s) 105, 384, 407
BfaI CTAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 3 cut(s) 105, 384, 407
BmrFI CCNGG 3 cut(s) 105, 384, 407
BpiI GAAGAC 1 cut(s) 394
BpmI CTGGAG 1 cut(s) 342
BseBI CCWGG 3 cut(s) 105, 384, 407
BseGI GGATG 2 cut(s) 13, 100
BseRI GAGGAG 2 cut(s) 64, 276
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 40
BsmI GAATGC 2 cut(s) 25, 335
BsnI GGCC 1 cut(s) 40
BspANI GGCC 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 76
Bst2UI CCWGG 3 cut(s) 105, 384, 407
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 292
BstEII GGTNACC 1 cut(s) 375
BstF5I GGATG 2 cut(s) 13, 100
BstMWI GCNNNNNNNGC 2 cut(s) 352, 429
BstNI CCWGG 3 cut(s) 105, 384, 407
BstNSI RCATGY 1 cut(s) 113
BstPI GGTNACC 1 cut(s) 375
BstSCI CCNGG 3 cut(s) 103, 382, 405
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 372
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 13, 100
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 225
CsiI ACCWGGT 1 cut(s) 405
Csp6I GTAC 1 cut(s) 115
CviAII CATG 5 cut(s) 110, 214, 238, 320, 372
CviJI RGCY 9 cut(s) 40, 127, 175, 223, 227, 284, 298, 423, 432
CviKI_1 RGCY 9 cut(s) 40, 127, 175, 223, 227, 284, 298, 423, 432
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 292
DraI TTTAAA 1 cut(s) 253
Eco147I AGGCCT 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 123
Eco91I GGTNACC 1 cut(s) 375
EcoO65I GGTNACC 1 cut(s) 375
EcoRII CCWGG 3 cut(s) 103, 382, 405
FaeI CATG 5 cut(s) 113, 217, 241, 323, 375
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 5 cut(s) 109, 213, 237, 319, 371
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 2 cut(s) 20, 87
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 40
Hin1II CATG 5 cut(s) 113, 217, 241, 323, 375
HinfI GANTC 1 cut(s) 323
HphI GGTGA 4 cut(s) 318, 331, 369, 421
Hpy166II GTNNAC 3 cut(s) 115, 192, 209
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 5 cut(s) 14, 131, 153, 359, 401
Hpy8I GTNNAC 3 cut(s) 115, 192, 209
HpyAV CCTTC 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 2 cut(s) 4, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 429
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 5 cut(s) 113, 217, 241, 323, 375
LmnI GCTCC 2 cut(s) 217, 289
Lsp1109I GCAGC 1 cut(s) 232
MabI ACCWGGT 1 cut(s) 405
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 2 cut(s) 375, 409
MboII GAAGA 5 cut(s) 168, 171, 174, 211, 399
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 7 cut(s) 24, 30, 42, 82, 297, 360, 366
MseI TTAA 2 cut(s) 252, 419
MslI CAYNNNNRTG 2 cut(s) 318, 370
MspR9I CCNGG 3 cut(s) 105, 384, 407
Mva1269I GAATGC 2 cut(s) 25, 335
MvaI CCWGG 3 cut(s) 105, 384, 407
MwoI GCNNNNNNNGC 2 cut(s) 352, 429
NlaIII CATG 5 cut(s) 113, 217, 241, 323, 375
NmuCI GTSAC 2 cut(s) 375, 409
NspI RCATGY 1 cut(s) 113
PaqCI CACCTGC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 40
PciI ACATGT 1 cut(s) 109
PctI GAATGC 2 cut(s) 25, 335
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PscI ACATGT 1 cut(s) 109
Psp6I CCWGG 3 cut(s) 103, 382, 405
PspEI GGTNACC 1 cut(s) 375
PspGI CCWGG 3 cut(s) 103, 382, 405
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 2 cut(s) 318, 370
SaqAI TTAA 2 cut(s) 252, 419
SatI GCNGC 1 cut(s) 221
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 105, 384, 407
SexAI ACCWGGT 1 cut(s) 405
SmiMI CAYNNNNRTG 2 cut(s) 318, 370
SseBI AGGCCT 1 cut(s) 40
SspMI CTAG 1 cut(s) 228
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 3 cut(s) 103, 382, 405
TaiI ACGT 1 cut(s) 416
Tru1I TTAA 2 cut(s) 252, 419
Tru9I TTAA 2 cut(s) 252, 419
TseFI GTSAC 2 cut(s) 375, 409
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 2 cut(s) 375, 409
TspDTI ATGAA 1 cut(s) 212
XceI RCATGY 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 191
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.