Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

54163077 .. 54164629

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20663

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAAACTGGACCGACACAGACACAACAACCTATCATCAATCAGCCACTGGAAAAAGTGACTGATGCAATTCGAATGGAACTGAAATCCCATTTTGAAATAGCGGGTGGCCCTCAAGTAGAATCCCTGAACAACCTGACTGCTGGACTGAATCGAAGAGGAGCGGCTTTGCTTTTCTATCAAACTTGTGTTCTTGCTACTCGTGATTTCGTAAAAGTTAAACAAAATGCCCCTTACGAGGATATTCTGATTACTAGAGGATCAAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

90

Amino Acids

10.0

Weight (kDa)

6.55

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	38 - 90	1.1e-20	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	2 cut(s)	104, 164
AclWI	GGATC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	98
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	11, 110
AsuII	TTCGAA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	11
BauI	CACGAG	1 cut(s)	201
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	11, 110
BmsI	GCATC	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	13, 54
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	13, 54
BseRI	GAGGAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	238
BsnI	GGCC	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	2 cut(s)	104, 164
BspANI	GGCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	13, 54
BssMI	GATC	1 cut(s)	260
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	151
BstBI	TTCGAA	1 cut(s)	73
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	11, 110
CviJI	RGCY	3 cut(s)	46, 111, 167
CviKI_1	RGCY	3 cut(s)	46, 111, 167
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	11
FaiI	YATR	1 cut(s)	269
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	111
HinfI	GANTC	2 cut(s)	122, 151
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	4 cut(s)	35, 129, 140, 149
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	262
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	168
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	4 cut(s)	123, 152, 232, 251
MseI	TTAA	1 cut(s)	219
NdeII	GATC	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	122, 151
PkrI	GCNGC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	11, 110
PstNI	CAGNNNCTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	2 cut(s)	11, 110
SetI	ASST	2 cut(s)	34, 138
SfaNI	GCATC	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	2 cut(s)	104, 164
SspMI	CTAG	1 cut(s)	255
TaqI	TCGA	2 cut(s)	73, 154
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	69
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	122, 151
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	11
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.