Rmu_sc0005578.1_g000004

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005578.1
Physical Location & Seq
Reverse (-)
28641 .. 33294
4654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005578.1_g000004.1.cds

Sequence Viewer

Length: 1179 bp
atggaattttatagaaagattgggaaatcagaccgttgctttgcggcgtgtggcggttcacgcggtttctctgtgacagctgtagccggaagtcaaattgtcaacactgtcgtggtgaggaaggaagtaattaatgaaggagagcccacacacattcgaccaccttctccaaattatctaataccttctccacctcgtcaagaccagcatcaggaaggacagcaggctaataatgtgtttgatgaagtggtgcagatgcaggatgttcaagagaatgctcaacagaggcagaggcctataaggaggagaaagagaaaaacaccaggctctgtaatggataatgaccaaacaatccatcctggacatgtgtaccaatcttggcttcaagatacttcagatatagtttcaagaagaagaagaaaccagaagcccaagaacataatgtctactatgaagattggtaaactcatggagcagccagctagtgttctcatgggtcgtttatttaaacctggaagtggagaaacatattacccagctcctctcttagagctattcaaggaaaaacatacccatgactcaccttctgcattcacctcgccacctctgcctctagaaccatcatcatggtcaccacctggaagacaaacttatcaagacctgcctgttgaagattttcttagtggagccaatcttattggcaagagaggagctgatgccaatctggcaacaccaagaaattctggagatgaaagaagatccgtcctgagctcctcatctgggaaggcagttgacaaaaacagttcagtagtcaattcaggacggaaaaggcgttattcatctaaacatagcaacgacggacttgaaccagtgtcggaggataatggatatcatcactctgatccaaacttcaaggtatcatggttatctggaaatggcccaacacctgagcaagcactattaatggaaactggaccgacacagacacaacaacctatcatcaatcagccactggaaaaagtgactgatgcaattcgaatggaactgaaatcccattttgaaatagcgggtggccctcaagtagaatccctgaacaacctgactgctggactgaatcgaagaggagcggctttgcttttctatcaaacttgtgtcatctgcagttcttgctactcgtga

Protein Analysis

392

Amino Acids

43.49

Weight (kDa)

9.18

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 669
AccBSI CCGCTC 1 cut(s) 1127
AccI GTMKAC 1 cut(s) 446
AccII CGCG 1 cut(s) 63
AciI CCGC 5 cut(s) 44, 54, 63, 1067, 1127
AclWI GGATC 2 cut(s) 753, 896
AcsI RAATTY 2 cut(s) 5, 739
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 3 cut(s) 211, 518, 780
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 8 cut(s) 269, 386, 408, 559, 671, 866, 913, 1061
AjnI CCWGG 4 cut(s) 322, 358, 511, 637
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 6 cut(s) 80, 482, 539, 553, 713, 771
AluI AGCT 6 cut(s) 80, 482, 539, 553, 713, 771
Alw21I GWGCWC 1 cut(s) 773
AlwI GGATC 2 cut(s) 753, 896
AlwNI CAGNNNCTG 2 cut(s) 329, 1012
AoxI GGCC 3 cut(s) 293, 937, 1072
ApeKI GCWGC 1 cut(s) 475
ApoI RAATTY 2 cut(s) 5, 739
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AseI ATTAAT 2 cut(s) 132, 962
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 3 cut(s) 938, 974, 1073
AsuHPI GGTGA 4 cut(s) 127, 573, 586, 624
AsuII TTCGAA 1 cut(s) 1036
AvaII GGWCC 1 cut(s) 974
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BanII GRGCYC 2 cut(s) 147, 773
BauI CACGAG 1 cut(s) 1174
BbsI GAAGAC 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 1 cut(s) 487
BccI CCATC 2 cut(s) 363, 628
BcgI CGANNNNNNTGC 2 cut(s) 579, 613
BciT130I CCWGG 4 cut(s) 324, 360, 513, 639
BfaI CTAG 2 cut(s) 483, 614
BfmI CTRYAG 2 cut(s) 81, 1159
BfuAI ACCTGC 1 cut(s) 669
BglI GCCNNNNNGGC 1 cut(s) 725
BisI GCNGC 3 cut(s) 45, 476, 1128
BlsI GCNGC 3 cut(s) 46, 477, 1129
Bme1390I CCNGG 4 cut(s) 324, 360, 513, 639
Bme18I GGWCC 1 cut(s) 974
BmgT120I GGNCC 3 cut(s) 938, 974, 1073
BmiI GGNNCC 1 cut(s) 688
BmrFI CCNGG 4 cut(s) 324, 360, 513, 639
BmsI GCATC 4 cut(s) 217, 246, 706, 1018
BpiI GAAGAC 1 cut(s) 649
BpmI CTGGAG 1 cut(s) 765
Bpu10I CCTNAGC 2 cut(s) 767, 948
Bpu14I TTCGAA 1 cut(s) 1036
BpuEI CTTGAG 1 cut(s) 1062
BsaBI GATNNNNATC 1 cut(s) 720
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 518, 780
Bse1I ACTGG 3 cut(s) 869, 976, 1017
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 4 cut(s) 324, 360, 513, 639
BseGI GGATG 2 cut(s) 268, 355
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 3 cut(s) 211, 518, 780
BseMII CTCAG 2 cut(s) 758, 939
BseNI ACTGG 3 cut(s) 869, 976, 1017
BseRI GAGGAG 5 cut(s) 319, 531, 723, 763, 1137
BseXI GCAGC 1 cut(s) 487
BseYI CCCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 295, 939, 1074
BsiHKAI GWGCWC 1 cut(s) 773
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 3 cut(s) 211, 518, 780
BsmI GAATGC 2 cut(s) 280, 590
BsnI GGCC 3 cut(s) 295, 939, 1074
Bsp119I TTCGAA 1 cut(s) 1036
Bsp1286I GDGCHC 2 cut(s) 147, 773
Bsp143I GATC 2 cut(s) 758, 901
BspACI CCGC 5 cut(s) 44, 54, 63, 1067, 1127
BspANI GGCC 3 cut(s) 295, 939, 1074
BspCNI CTCAG 2 cut(s) 759, 940
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 688
BspMAI CTGCAG 1 cut(s) 1163
BspMI ACCTGC 1 cut(s) 669
BspPI GGATC 2 cut(s) 753, 896
BspT104I TTCGAA 1 cut(s) 1036
BsrBI CCGCTC 1 cut(s) 1127
BsrI ACTGG 3 cut(s) 869, 976, 1017
BssMI GATC 2 cut(s) 758, 901
BssSI CACGAG 1 cut(s) 1174
Bst2BI CACGAG 1 cut(s) 1174
Bst2UI CCWGG 4 cut(s) 324, 360, 513, 639
Bst4CI ACNGT 3 cut(s) 35, 109, 803
Bst6I CTCTTC 1 cut(s) 1114
BstAPI GCANNNNNTGC 1 cut(s) 1167
BstBI TTCGAA 1 cut(s) 1036
BstC8I GCNNGC 3 cut(s) 225, 480, 954
BstDEI CTNAG 4 cut(s) 547, 680, 767, 948
BstEII GGTNACC 1 cut(s) 630
BstF5I GGATG 2 cut(s) 268, 355
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 2 cut(s) 761, 904
BstMBI GATC 2 cut(s) 758, 901
BstMWI GCNNNNNNNGC 4 cut(s) 60, 607, 725, 1167
BstNI CCWGG 4 cut(s) 324, 360, 513, 639
BstNSI RCATGY 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 630
BstSCI CCNGG 4 cut(s) 322, 358, 511, 637
BstSFI CTRYAG 2 cut(s) 81, 1159
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 487
BstV2I GAAGAC 1 cut(s) 649
BstX2I RGATCY 1 cut(s) 758
BstXI CCANNNNNNTGG 1 cut(s) 627
BstYI RGATCY 1 cut(s) 758
BsuRI GGCC 3 cut(s) 295, 939, 1074
BtsCI GGATG 2 cut(s) 268, 355
BtsIMutI CAGTG 3 cut(s) 105, 876, 1010
BveI ACCTGC 1 cut(s) 669
Cac8I GCNNGC 3 cut(s) 225, 480, 954
CaiI CAGNNNCTG 2 cut(s) 329, 1012
Cfr13I GGNCC 3 cut(s) 938, 974, 1073
Csp6I GTAC 1 cut(s) 370
CviAII CATG 6 cut(s) 365, 469, 493, 575, 627, 921
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 4 cut(s) 547, 680, 767, 948
DpnI GATC 2 cut(s) 760, 903
DpnII GATC 2 cut(s) 758, 901
DraI TTTAAA 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 1114
EarI CTCTTC 1 cut(s) 1114
Ecl136II GAGCTC 1 cut(s) 771
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 2 cut(s) 147, 773
Eco32I GATATC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 974
Eco53kI GAGCTC 1 cut(s) 771
Eco57I CTGAAG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 771
EcoO65I GGTNACC 1 cut(s) 630
EcoRII CCWGG 4 cut(s) 322, 358, 511, 637
EcoRV GATATC 1 cut(s) 890
EcoT38I GRGCYC 2 cut(s) 147, 773
FaeI CATG 6 cut(s) 368, 472, 496, 578, 630, 924
FalI AAGNNNNNCTT 4 cut(s) 634, 666, 663, 695
FatI CATG 6 cut(s) 364, 468, 492, 574, 626, 920
FauI CCCGC 1 cut(s) 1060
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 3 cut(s) 45, 476, 1128
FokI GGATG 2 cut(s) 275, 342
FriOI GRGCYC 2 cut(s) 147, 773
Fsp4HI GCNGC 3 cut(s) 45, 476, 1128
FspBI CTAG 2 cut(s) 483, 614
GluI GCNGC 3 cut(s) 45, 476, 1128
GsaI CCCAGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 3 cut(s) 295, 939, 1074
HapII CCGG 1 cut(s) 87
Hin1II CATG 6 cut(s) 368, 472, 496, 578, 630, 924
HincII GTYRAC 2 cut(s) 103, 793
HindII GTYRAC 2 cut(s) 103, 793
HinfI GANTC 3 cut(s) 578, 1085, 1114
HpaII CCGG 1 cut(s) 87
HphI GGTGA 4 cut(s) 127, 573, 586, 624
Hpy166II GTNNAC 6 cut(s) 59, 103, 370, 447, 464, 793
Hpy188I TCNGA 4 cut(s) 31, 397, 877, 901
Hpy8I GTNNAC 6 cut(s) 59, 103, 370, 447, 464, 793
Hpy99I CGWCG 1 cut(s) 860
HpyAV CCTTC 7 cut(s) 115, 131, 174, 195, 209, 594, 778
HpyCH4III ACNGT 3 cut(s) 35, 109, 803
HpyCH4V TGCA 5 cut(s) 253, 259, 590, 1031, 1161
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 607, 725, 1167
HpyF3I CTNAG 4 cut(s) 547, 680, 767, 948
Hsp92II CATG 6 cut(s) 368, 472, 496, 578, 630, 924
Kzo9I GATC 2 cut(s) 758, 901
LmnI GCTCC 6 cut(s) 472, 544, 686, 710, 776, 1124
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 4 cut(s) 217, 246, 706, 1018
MaeI CTAG 2 cut(s) 483, 614
MaeIII GTNAC 3 cut(s) 73, 630, 1021
MalI GATC 2 cut(s) 760, 903
MbiI CCGCTC 1 cut(s) 1127
MboI GATC 2 cut(s) 758, 901
MboII GAAGA 8 cut(s) 423, 426, 429, 466, 654, 683, 768, 1131
MflI RGATCY 1 cut(s) 758
MhlI GDGCHC 2 cut(s) 147, 773
MluCI AATT 7 cut(s) 5, 96, 129, 172, 739, 814, 1032
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 855
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 3 cut(s) 132, 507, 962
MslI CAYNNNNRTG 3 cut(s) 110, 573, 625
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 4 cut(s) 324, 360, 513, 639
Mva1269I GAATGC 2 cut(s) 280, 590
MvaI CCWGG 4 cut(s) 324, 360, 513, 639
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 4 cut(s) 60, 607, 725, 1167
NdeII GATC 2 cut(s) 758, 901
NlaIII CATG 6 cut(s) 368, 472, 496, 578, 630, 924
NlaIV GGNNCC 1 cut(s) 688
NmuCI GTSAC 3 cut(s) 73, 630, 1021
NspI RCATGY 1 cut(s) 368
NspV TTCGAA 1 cut(s) 1036
OliI CACNNNNGTG 1 cut(s) 110
PceI AGGCCT 1 cut(s) 295
PciI ACATGT 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 829
PctI GAATGC 2 cut(s) 280, 590
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 1085, 1114
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 3 cut(s) 46, 477, 1129
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PscI ACATGT 1 cut(s) 364
PshBI ATTAAT 2 cut(s) 132, 962
Psp124BI GAGCTC 1 cut(s) 773
Psp6I CCWGG 4 cut(s) 322, 358, 511, 637
PspEI GGTNACC 1 cut(s) 630
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 4 cut(s) 322, 358, 511, 637
PspN4I GGNNCC 1 cut(s) 688
PspPI GGNCC 3 cut(s) 938, 974, 1073
PstI CTGCAG 1 cut(s) 1163
PstNI CAGNNNCTG 2 cut(s) 329, 1012
PsuI RGATCY 1 cut(s) 758
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 3 cut(s) 110, 573, 625
SacI GAGCTC 1 cut(s) 773
SaqAI TTAA 3 cut(s) 132, 507, 962
SatI GCNGC 3 cut(s) 45, 476, 1128
Sau3AI GATC 2 cut(s) 758, 901
Sau96I GGNCC 3 cut(s) 938, 974, 1073
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 4 cut(s) 324, 360, 513, 639
SduI GDGCHC 2 cut(s) 147, 773
SfaNI GCATC 4 cut(s) 217, 246, 706, 1018
SfcI CTRYAG 2 cut(s) 81, 1159
SfuI TTCGAA 1 cut(s) 1036
SinI GGWCC 1 cut(s) 974
SmiMI CAYNNNNRTG 3 cut(s) 110, 573, 625
SmlI CTYRAG 1 cut(s) 1077
SmoI CTYRAG 1 cut(s) 1077
Sse9I AATT 7 cut(s) 5, 96, 129, 172, 739, 814, 1032
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 5 cut(s) 44, 54, 63, 1067, 1127
SspMI CTAG 2 cut(s) 483, 614
SstI GAGCTC 1 cut(s) 773
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 4 cut(s) 322, 358, 511, 637
TaaI ACNGT 3 cut(s) 35, 109, 803
TaqI TCGA 3 cut(s) 157, 1036, 1117
TaqII GACCGA 1 cut(s) 991
TasI AATT 7 cut(s) 5, 96, 129, 172, 739, 814, 1032
TauI GCSGC 2 cut(s) 47, 1130
TfiI GAWTC 2 cut(s) 1085, 1114
Tru1I TTAA 3 cut(s) 132, 507, 962
Tru9I TTAA 3 cut(s) 132, 507, 962
TscAI CASTG 3 cut(s) 112, 876, 1017
TseFI GTSAC 3 cut(s) 73, 630, 1021
TseI GCWGC 1 cut(s) 475
Tsp45I GTSAC 3 cut(s) 73, 630, 1021
TspDTI ATGAA 5 cut(s) 150, 258, 467, 765, 828
TspGWI ACGGA 3 cut(s) 751, 838, 873
TspRI CASTG 3 cut(s) 112, 876, 1017
VpaK11BI GGWCC 1 cut(s) 974
VspI ATTAAT 2 cut(s) 132, 962
XapI RAATTY 2 cut(s) 5, 739
XbaI TCTAGA 1 cut(s) 613
XceI RCATGY 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 2 cut(s) 483, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.