Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

10144063 .. 10148449

Gene Structure 4387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

ATGTTCTACTCTCACAGCCTCCTAGCTCGCAAAGAGCCGCTCGGCCAAATCTGCGAAGAGATTCTGAATCCAAGAGCTCCTATGGCTCTCCGACTCTCCAGTGGAGTCGTCATCGTCTACGAACGTAAAGTGAAGCTTCTATTCGATGATGTGCACCGTCTTCTGGATGAATTAAACGAAGCATGGAAGAAGGTGAAATCCAACACAGACTCCACTATCCTACCCAAACGGAGAGCTCAGGCCAGGAAAGAAGCAATAACTCTGCCCGAGGCTGAGCATGAAGATACAGATCTTGTTGGTGACATCGAGCAGTCGCTTGATTTTTCTCACCATGCCACGCTTTTCCAGCAGCAAACCGGCTATTTTCTCATGCAACTGGATAGTGTAGATGTGGGAGAAACACTTAACGATAATGCAGTGGAGGGGGATCAACATCAGAACTTACATCAAGCTGATCCTGAGGATATCACATTGCCTAAATGTTATGATCCATCAGATGCACATGCAGATTTGTTCAACTGTCGCTTTGAGAGATTTGAAATTGAGGGAGATGACATAGACCTCACATCAGGAGAGCCCACACATATTCGACCACCTTCTCCAAATTATCTAATACCTTCTCCACCTCATCAAGACCAGCATCAGGAAGGACAGCAGGCTAATAATGGGTTTGATGAAGTGGTGCAGATGCAGGATGTTCAAGAGAATGCTCAACCGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACGAGGCTCTGTAATGGATAATGACCAAACAATCCATCCTGGACATGTGTACCAGTCTTGGCTTCAAGATACTTCAGATATAGTTTCAAGAAGACGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCACATGGGTTGTTTATTTAAACCTGGAAGTGGAGAAACATATTATCCAGTTCCTCTCTTAGAGCTATTCAAGGAAATACATACCCATGACTCACCTTCTGCATTCACCTCGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATGAAGACCTGCCTGTTGAAGATTTTCTTAGTGGAGGTGGCTCCCAATCATTTGCAACTCCCACGGAACAGATACGAACAAATTTAGTTAACAATGACCAACAACAGGAAGTGCTGGATGATCTGCGAGCCAATCTTATTGGCAAGAGAGGAGCTGATGCCAACCTGGCAACACCAAGGAATTCTGGAGATGAAAGAAGATCCATCCTGAGCTCCTCATCTGGGAAGGGAGTTGACAAAAACAGTTCAGAAGTCAATTCAGGACGATCCAACAGGAAAAGGCGTTATTCATCTAAACATAGCAACGACGGACTTGAACCAGTGTCGGAGGATAATGGATATCATCACTCTGATCCAAACTTCAAGGTATCAAGGTTATCTGGAAATGGCCCAACACCTGAGCAAGAACTATTGATGGAAACTGGACCGACACAGACACAACAACCTATCATCAATCAGCCACTGGAAAAAGTGACTGATGCAATTCGAATGGAACTGCAATCCCATTTTGAAATCCCGGGTGGCCCTCAAGTAGAATCCCTGAACAACCTGACTGCTGGAATGAATCGAAGAGGAGCGGCTTTGCTTTTCTATCAAACTTGTGTTCTTGCTACTCGTGATTTTGTAAAAGTTAAACAAAATGCCCCTTACGAGGATATTCTCATGACTAGAGGACCAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

590

Amino Acids

66.33

Weight (kDa)

5.6

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	16 - 72	8.6e-11	N terminus of Rad21 / Rec8 like protein
Rad21_Rec8	PF04824	537 - 589	2.7e-19	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1101
AccBSI	CCGCTC	2 cut(s)	40, 1661
AccI	GTMKAC	2 cut(s)	117, 878
AciI	CCGC	2 cut(s)	38, 1661
AclWI	GGATC	6 cut(s)	435, 449, 482, 1278, 1344, 1430
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	1165, 1264
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	1 cut(s)	803
AfiI	CCNNNNNNNGG	6 cut(s)	163, 643, 950, 1189, 1305, 1735
AflIII	ACRYGT	1 cut(s)	796
AjnI	CCWGG	5 cut(s)	242, 790, 943, 1069, 1248
AluBI	AGCT	9 cut(s)	26, 77, 136, 236, 452, 914, 985, 1238, 1296
AluI	AGCT	9 cut(s)	26, 77, 136, 236, 452, 914, 985, 1238, 1296
Alw21I	GWGCWC	4 cut(s)	79, 156, 238, 1298
Alw44I	GTGCAC	1 cut(s)	152
AlwI	GGATC	6 cut(s)	435, 449, 482, 1278, 1344, 1430
AlwNI	CAGNNNCTG	1 cut(s)	1546
Ama87I	CYCGRG	2 cut(s)	266, 1600
AoxI	GGCC	5 cut(s)	43, 240, 725, 1471, 1606
ApaLI	GTGCAC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	349, 907
ApoI	RAATTY	2 cut(s)	1165, 1264
Asp700I	GAANNNNTTC	2 cut(s)	60, 1107
AspS9I	GGNCC	4 cut(s)	1472, 1508, 1607, 1757
AsuC2I	CCSGG	2 cut(s)	1601, 1602
AsuHPI	GGTGA	6 cut(s)	205, 311, 320, 1005, 1018, 1056
AsuII	TTCGAA	1 cut(s)	1570
AvaI	CYCGRG	2 cut(s)	266, 1600
AvaII	GGWCC	2 cut(s)	1508, 1757
AxyI	CCTNAGG	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	156
BaeI	ACNNNNGTAYC	2 cut(s)	785, 818
BanII	GRGCYC	4 cut(s)	79, 238, 579, 1298
BauI	CACGAG	2 cut(s)	753, 1698
BbsI	GAAGAC	4 cut(s)	152, 850, 1081, 1095
Bbv12I	GWGCWC	4 cut(s)	79, 156, 238, 1298
BbvI	GCAGC	2 cut(s)	361, 919
BccI	CCATC	5 cut(s)	499, 795, 1060, 1295, 1492
BcgI	CGANNNNNNTGC	2 cut(s)	1011, 1045
BciT130I	CCWGG	5 cut(s)	244, 792, 945, 1071, 1250
BcnI	CCSGG	2 cut(s)	1601, 1602
BfaI	CTAG	3 cut(s)	23, 915, 1752
BfuAI	ACCTGC	1 cut(s)	1101
BglI	GCCNNNNNGGC	1 cut(s)	1250
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	4 cut(s)	38, 350, 908, 1662
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	4 cut(s)	39, 351, 909, 1663
Bme1390I	CCNGG	7 cut(s)	244, 792, 945, 1071, 1250, 1601, 1602
Bme18I	GGWCC	2 cut(s)	1508, 1757
BmeT110I	CYCGRG	2 cut(s)	266, 1600
BmgT120I	GGNCC	4 cut(s)	1472, 1508, 1607, 1757
BmiI	GGNNCC	1 cut(s)	1126
BmrFI	CCNGG	7 cut(s)	244, 792, 945, 1071, 1250, 1601, 1602
BmsI	GCATC	5 cut(s)	487, 649, 678, 1231, 1552
BpiI	GAAGAC	4 cut(s)	152, 850, 1081, 1095
BpmI	CTGGAG	3 cut(s)	82, 1029, 1290
Bpu10I	CCTNAGC	3 cut(s)	237, 1292, 1482
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	1570
BpuEI	CTTGAG	1 cut(s)	1596
BpuMI	CCSGG	2 cut(s)	1601, 1602
BsaBI	GATNNNNATC	2 cut(s)	288, 432
BsaJI	CCNNGG	5 cut(s)	267, 716, 1146, 1259, 1600
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	6 cut(s)	163, 643, 950, 1189, 1305, 1735
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	7 cut(s)	99, 381, 805, 968, 1403, 1510, 1551
Bse21I	CCTNAGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	470
Bse8I	GATNNNNATC	2 cut(s)	288, 432
BseBI	CCWGG	5 cut(s)	244, 792, 945, 1071, 1250
BseDI	CCNNGG	5 cut(s)	267, 716, 1146, 1259, 1600
BseGI	GGATG	5 cut(s)	172, 700, 787, 1207, 1287
BseJI	GATNNNNATC	2 cut(s)	288, 432
BseLI	CCNNNNNNNGG	6 cut(s)	163, 643, 950, 1189, 1305, 1735
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	5 cut(s)	251, 264, 450, 1283, 1473
BseNI	ACTGG	7 cut(s)	99, 381, 805, 968, 1403, 1510, 1551
BseRI	GAGGAG	4 cut(s)	751, 1248, 1288, 1671
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	361, 919
BsgI	GTGCAG	1 cut(s)	704
BshFI	GGCC	5 cut(s)	45, 242, 727, 1473, 1608
BsiHKAI	GWGCWC	4 cut(s)	79, 156, 238, 1298
BsiHKCI	CYCGRG	2 cut(s)	266, 1600
BsiSI	CCGG	2 cut(s)	357, 1601
BslI	CCNNNNNNNGG	6 cut(s)	163, 643, 950, 1189, 1305, 1735
BsmI	GAATGC	2 cut(s)	712, 1022
BsnI	GGCC	5 cut(s)	45, 242, 727, 1473, 1608
BsoBI	CYCGRG	2 cut(s)	266, 1600
Bsp119I	TTCGAA	1 cut(s)	1570
Bsp1286I	GDGCHC	5 cut(s)	79, 156, 238, 579, 1298
Bsp143I	GATC	8 cut(s)	289, 427, 454, 487, 1204, 1283, 1349, 1435
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	2 cut(s)	38, 1661
BspANI	GGCC	5 cut(s)	45, 242, 727, 1473, 1608
BspCNI	CTCAG	5 cut(s)	250, 265, 451, 1284, 1474
BspHI	TCATGA	1 cut(s)	1746
BspLI	GGNNCC	1 cut(s)	1126
BspMI	ACCTGC	1 cut(s)	1101
BspPI	GGATC	6 cut(s)	435, 449, 482, 1278, 1344, 1430
BspT104I	TTCGAA	1 cut(s)	1570
BsrBI	CCGCTC	2 cut(s)	40, 1661
BsrDI	GCAATG	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	7 cut(s)	99, 381, 805, 968, 1403, 1510, 1551
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	5 cut(s)	267, 716, 1146, 1259, 1600
BssMI	GATC	8 cut(s)	289, 427, 454, 487, 1204, 1283, 1349, 1435
BssSI	CACGAG	2 cut(s)	753, 1698
BssT1I	CCWWGG	1 cut(s)	1259
Bst2BI	CACGAG	2 cut(s)	753, 1698
Bst2UI	CCWGG	5 cut(s)	244, 792, 945, 1071, 1250
Bst4CI	ACNGT	3 cut(s)	158, 521, 1328
Bst6I	CTCTTC	2 cut(s)	51, 1648
BstBI	TTCGAA	1 cut(s)	1570
BstC8I	GCNNGC	4 cut(s)	28, 657, 912, 1212
BstDEI	CTNAG	7 cut(s)	237, 273, 459, 979, 1112, 1292, 1482
BstDSI	CCRYGG	1 cut(s)	1146
BstEII	GGTNACC	1 cut(s)	1062
BstF5I	GGATG	5 cut(s)	172, 700, 787, 1207, 1287
BstKTI	GATC	8 cut(s)	292, 430, 457, 490, 1207, 1286, 1352, 1438
BstMBI	GATC	8 cut(s)	289, 427, 454, 487, 1204, 1283, 1349, 1435
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 83, 346, 1039, 1250
BstNI	CCWGG	5 cut(s)	244, 792, 945, 1071, 1250
BstNSI	RCATGY	2 cut(s)	506, 800
BstPI	GGTNACC	1 cut(s)	1062
BstSCI	CCNGG	7 cut(s)	242, 790, 943, 1069, 1248, 1599, 1600
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	361, 919
BstV2I	GAAGAC	4 cut(s)	152, 850, 1081, 1095
BstX2I	RGATCY	2 cut(s)	289, 1283
BstXI	CCANNNNNNTGG	1 cut(s)	1059
BstYI	RGATCY	2 cut(s)	289, 1283
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	5 cut(s)	45, 242, 727, 1473, 1608
BtgI	CCRYGG	1 cut(s)	1146
BtsCI	GGATG	5 cut(s)	172, 700, 787, 1207, 1287
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	4 cut(s)	106, 423, 1410, 1544
BveI	ACCTGC	1 cut(s)	1101
Cac8I	GCNNGC	4 cut(s)	28, 657, 912, 1212
CaiI	CAGNNNCTG	1 cut(s)	1546
CciI	TCATGA	1 cut(s)	1746
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	4 cut(s)	1472, 1508, 1607, 1757
Cfr9I	CCCGGG	1 cut(s)	1600
Csp6I	GTAC	1 cut(s)	802
CviQI	GTAC	1 cut(s)	802
DdeI	CTNAG	7 cut(s)	237, 273, 459, 979, 1112, 1292, 1482
DpnI	GATC	8 cut(s)	291, 429, 456, 489, 1206, 1285, 1351, 1437
DpnII	GATC	8 cut(s)	289, 427, 454, 487, 1204, 1283, 1349, 1435
DraI	TTTAAA	1 cut(s)	940
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	51, 1648
EarI	CTCTTC	2 cut(s)	51, 1648
Ecl136II	GAGCTC	3 cut(s)	77, 236, 1296
Eco130I	CCWWGG	1 cut(s)	1259
Eco147I	AGGCCT	1 cut(s)	727
Eco24I	GRGCYC	4 cut(s)	79, 238, 579, 1298
Eco32I	GATATC	2 cut(s)	466, 1424
Eco47I	GGWCC	2 cut(s)	1508, 1757
Eco53kI	GAGCTC	3 cut(s)	77, 236, 1296
Eco57I	CTGAAG	1 cut(s)	810
Eco81I	CCTNAGG	1 cut(s)	459
Eco88I	CYCGRG	2 cut(s)	266, 1600
Eco91I	GGTNACC	1 cut(s)	1062
EcoICRI	GAGCTC	3 cut(s)	77, 236, 1296
EcoO65I	GGTNACC	1 cut(s)	1062
EcoRI	GAATTC	1 cut(s)	1264
EcoRII	CCWGG	5 cut(s)	242, 790, 943, 1069, 1248
EcoRV	GATATC	2 cut(s)	466, 1424
EcoT14I	CCWWGG	1 cut(s)	1259
EcoT38I	GRGCYC	4 cut(s)	79, 238, 579, 1298
ErhI	CCWWGG	1 cut(s)	1259
FalI	AAGNNNNNCTT	6 cut(s)	120, 152, 1066, 1098, 1095, 1127
FblI	GTMKAC	2 cut(s)	117, 878
Fnu4HI	GCNGC	4 cut(s)	38, 350, 908, 1662
FokI	GGATG	5 cut(s)	179, 707, 774, 1214, 1274
FriOI	GRGCYC	4 cut(s)	79, 238, 579, 1298
Fsp4HI	GCNGC	4 cut(s)	38, 350, 908, 1662
FspBI	CTAG	3 cut(s)	23, 915, 1752
GluI	GCNGC	4 cut(s)	38, 350, 908, 1662
GsuI	CTGGAG	3 cut(s)	82, 1029, 1290
HaeIII	GGCC	5 cut(s)	45, 242, 727, 1473, 1608
HapII	CCGG	2 cut(s)	357, 1601
HincII	GTYRAC	2 cut(s)	1174, 1318
HindII	GTYRAC	2 cut(s)	1174, 1318
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	8 cut(s)	61, 67, 93, 105, 209, 1010, 1619, 1648
HpaI	GTTAAC	1 cut(s)	1174
HpaII	CCGG	2 cut(s)	357, 1601
HphI	GGTGA	6 cut(s)	205, 311, 320, 1005, 1018, 1056
Hpy166II	GTNNAC	8 cut(s)	118, 154, 802, 879, 896, 922, 1174, 1318
Hpy188I	TCNGA	8 cut(s)	66, 92, 438, 496, 829, 1333, 1411, 1435
Hpy8I	GTNNAC	8 cut(s)	118, 154, 802, 879, 896, 922, 1174, 1318
Hpy99I	CGWCG	1 cut(s)	1394
HpyAV	CCTTC	6 cut(s)	184, 606, 627, 641, 1026, 1303
HpyCH4III	ACNGT	3 cut(s)	158, 521, 1328
HpyCH4IV	ACGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 83, 346, 1039, 1250
HpyF3I	CTNAG	7 cut(s)	237, 273, 459, 979, 1112, 1292, 1482
HpySE526I	ACGT	1 cut(s)	124
KspAI	GTTAAC	1 cut(s)	1174
Kzo9I	GATC	8 cut(s)	289, 427, 454, 487, 1204, 1283, 1349, 1435
LmnI	GCTCC	6 cut(s)	82, 904, 1130, 1235, 1301, 1658
Lsp1109I	GCAGC	2 cut(s)	361, 919
LweI	GCATC	5 cut(s)	487, 649, 678, 1231, 1552
MaeI	CTAG	3 cut(s)	23, 915, 1752
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	299, 1062, 1555
MalI	GATC	8 cut(s)	291, 429, 456, 489, 1206, 1285, 1351, 1437
MbiI	CCGCTC	2 cut(s)	40, 1661
MboI	GATC	8 cut(s)	289, 427, 454, 487, 1204, 1283, 1349, 1435
MflI	RGATCY	2 cut(s)	289, 1283
MhlI	GDGCHC	5 cut(s)	79, 156, 238, 579, 1298
MluCI	AATT	7 cut(s)	170, 540, 604, 1165, 1264, 1339, 1566
MlyI	GAGTC	4 cut(s)	87, 114, 203, 1004
MmeI	TCCRAC	4 cut(s)	115, 225, 1377, 1389
MroXI	GAANNNNTTC	2 cut(s)	60, 1107
MseI	TTAA	5 cut(s)	173, 405, 939, 1173, 1716
MslI	CAYNNNNRTG	2 cut(s)	1005, 1057
MspI	CCGG	2 cut(s)	357, 1601
MspR9I	CCNGG	7 cut(s)	244, 792, 945, 1071, 1250, 1601, 1602
Mva1269I	GAATGC	2 cut(s)	712, 1022
MvaI	CCWGG	5 cut(s)	244, 792, 945, 1071, 1250
MwoI	GCNNNNNNNGC	5 cut(s)	51, 83, 346, 1039, 1250
NciI	CCSGG	2 cut(s)	1601, 1602
NdeII	GATC	8 cut(s)	289, 427, 454, 487, 1204, 1283, 1349, 1435
NlaIV	GGNNCC	1 cut(s)	1126
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	3 cut(s)	299, 1062, 1555
NspI	RCATGY	2 cut(s)	506, 800
NspV	TTCGAA	1 cut(s)	1570
PagI	TCATGA	1 cut(s)	1746
PceI	AGGCCT	1 cut(s)	727
PciI	ACATGT	1 cut(s)	796
PctI	GAATGC	2 cut(s)	712, 1022
PdmI	GAANNNNTTC	2 cut(s)	60, 1107
PfeI	GAWTC	4 cut(s)	61, 67, 1619, 1648
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	4 cut(s)	39, 351, 909, 1663
PleI	GAGTC	4 cut(s)	87, 113, 203, 1004
PpsI	GAGTC	4 cut(s)	87, 113, 203, 1004
PscI	ACATGT	1 cut(s)	796
Psp124BI	GAGCTC	3 cut(s)	79, 238, 1298
Psp6I	CCWGG	5 cut(s)	242, 790, 943, 1069, 1248
PspEI	GGTNACC	1 cut(s)	1062
PspGI	CCWGG	5 cut(s)	242, 790, 943, 1069, 1248
PspN4I	GGNNCC	1 cut(s)	1126
PspPI	GGNCC	4 cut(s)	1472, 1508, 1607, 1757
PstNI	CAGNNNCTG	1 cut(s)	1546
PsuI	RGATCY	2 cut(s)	289, 1283
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	2 cut(s)	1005, 1057
SacI	GAGCTC	3 cut(s)	79, 238, 1298
SaqAI	TTAA	5 cut(s)	173, 405, 939, 1173, 1716
SatI	GCNGC	4 cut(s)	38, 350, 908, 1662
Sau3AI	GATC	8 cut(s)	289, 427, 454, 487, 1204, 1283, 1349, 1435
Sau96I	GGNCC	4 cut(s)	1472, 1508, 1607, 1757
SchI	GAGTC	4 cut(s)	87, 114, 203, 1004
ScrFI	CCNGG	7 cut(s)	244, 792, 945, 1071, 1250, 1601, 1602
SduI	GDGCHC	5 cut(s)	79, 156, 238, 579, 1298
SfaNI	GCATC	5 cut(s)	487, 649, 678, 1231, 1552
SfuI	TTCGAA	1 cut(s)	1570
SinI	GGWCC	2 cut(s)	1508, 1757
SmaI	CCCGGG	1 cut(s)	1602
SmiMI	CAYNNNNRTG	2 cut(s)	1005, 1057
SmlI	CTYRAG	1 cut(s)	1611
SmoI	CTYRAG	1 cut(s)	1611
Sse9I	AATT	7 cut(s)	170, 540, 604, 1165, 1264, 1339, 1566
SseBI	AGGCCT	1 cut(s)	727
SsiI	CCGC	2 cut(s)	38, 1661
SspMI	CTAG	3 cut(s)	23, 915, 1752
SstI	GAGCTC	3 cut(s)	79, 238, 1298
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	7 cut(s)	242, 790, 943, 1069, 1248, 1599, 1600
StyI	CCWWGG	1 cut(s)	1259
TaaI	ACNGT	3 cut(s)	158, 521, 1328
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	5 cut(s)	144, 306, 589, 1570, 1651
TaqII	GACCGA	1 cut(s)	1525
TasI	AATT	7 cut(s)	170, 540, 604, 1165, 1264, 1339, 1566
TauI	GCSGC	2 cut(s)	40, 1664
TfiI	GAWTC	4 cut(s)	61, 67, 1619, 1648
Tru1I	TTAA	5 cut(s)	173, 405, 939, 1173, 1716
Tru9I	TTAA	5 cut(s)	173, 405, 939, 1173, 1716
TscAI	CASTG	4 cut(s)	106, 423, 1410, 1551
TseFI	GTSAC	3 cut(s)	299, 1062, 1555
TseI	GCWGC	2 cut(s)	349, 907
Tsp45I	GTSAC	3 cut(s)	299, 1062, 1555
TspDTI	ATGAA	8 cut(s)	183, 294, 690, 899, 1101, 1290, 1362, 1661
TspGWI	ACGGA	3 cut(s)	244, 1163, 1407
TspMI	CCCGGG	1 cut(s)	1600
TspRI	CASTG	4 cut(s)	106, 423, 1410, 1551
VneI	GTGCAC	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	1508, 1757
XapI	RAATTY	2 cut(s)	1165, 1264
XceI	RCATGY	2 cut(s)	506, 800
XmaI	CCCGGG	1 cut(s)	1600
XmiI	GTMKAC	2 cut(s)	117, 878
XmnI	GAANNNNTTC	2 cut(s)	60, 1107
XspI	CTAG	3 cut(s)	23, 915, 1752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.