Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

18978755 .. 18979495

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTCACCACCTGGAAGACAAACTTATCAAGACCTGGTGAAATATTTGAGTTTATGCAGCTACTTATAGTTTCCTTATTTTTCAGAAAACTATTACTAAGTTTCTGTCTGACAAGTTATAATATGTTAAATGTAAAGCCTGTTGAAGATCTTCACAGTGGACGCAGCTCCCAGTCATTTGTAACTCCCACAGAACAGCTACGGACATATTTATTTGACAATGATGTACCACCACCTGACATCATGGATGAACTGAGAACCAATCTTAATGAGATCGATGAAAGAAGATCTGTCCTGAGCTCCTCATCTGGAAAGGTAGCTAACAAAAACAGTTCAGAAGTCGATTCAGAACGTATAGATGGTCACAGATCGAAGAGCAAAAGGCGTTATTCATCTAAACATAGCAATGATGGACTTGAACCAGTGTCAGAGGACAATGGATTTCATCACCCTGATCCAAACTTTAAGGTATCAAGGTTATCTGGAAATGGCCCAACACCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

169

Amino Acids

19.07

Weight (kDa)

6.52

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AclWI	GGATC	1 cut(s)	449
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	146, 419
AjnI	CCWGG	2 cut(s)	11, 34
AluBI	AGCT	5 cut(s)	61, 168, 199, 300, 320
AluI	AGCT	5 cut(s)	61, 168, 199, 300, 320
Alw21I	GWGCWC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	58, 165
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	50, 440
BanII	GRGCYC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	70, 177
BccI	CCATC	2 cut(s)	353, 404
BciT130I	CCWGG	2 cut(s)	13, 36
BglII	AGATCT	2 cut(s)	148, 287
BisI	GCNGC	2 cut(s)	59, 166
BlsI	GCNGC	2 cut(s)	60, 167
Bme1390I	CCNGG	2 cut(s)	13, 36
BmgT120I	GGNCC	1 cut(s)	491
BmrFI	CCNGG	2 cut(s)	13, 36
BmrI	ACTGGG	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	172, 422
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	13, 36
BseCI	ATCGAT	1 cut(s)	276
BseGI	GGATG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	245, 287
BseNI	ACTGG	2 cut(s)	172, 422
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	70, 177
BshFI	GGCC	1 cut(s)	492
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	148, 273, 287, 368, 454
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	246, 288
BspDI	ATCGAT	1 cut(s)	276
BspPI	GGATC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	172, 422
BssMI	GATC	5 cut(s)	148, 273, 287, 368, 454
Bst2UI	CCWGG	2 cut(s)	13, 36
Bst4CI	ACNGT	2 cut(s)	158, 332
Bst6I	CTCTTC	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	98, 254, 296
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	5 cut(s)	151, 276, 290, 371, 457
BstMBI	GATC	5 cut(s)	148, 273, 287, 368, 454
BstNI	CCWGG	2 cut(s)	13, 36
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	11, 34
BstV1I	GCAGC	2 cut(s)	70, 177
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	2 cut(s)	148, 287
BstYI	RGATCY	2 cut(s)	148, 287
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	492
BsuTUI	ATCGAT	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	163, 429
Cfr13I	GGNCC	1 cut(s)	491
ClaI	ATCGAT	1 cut(s)	276
CseI	GACGC	1 cut(s)	171
CsiI	ACCWGGT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	7 cut(s)	61, 139, 168, 199, 300, 320, 492
CviKI_1	RGCY	7 cut(s)	61, 139, 168, 199, 300, 320, 492
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	98, 254, 296
DpnI	GATC	5 cut(s)	150, 275, 289, 370, 456
DpnII	GATC	5 cut(s)	148, 273, 287, 368, 454
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	300
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	300
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	11, 34
EcoT38I	GRGCYC	1 cut(s)	302
FaeI	CATG	1 cut(s)	247
FaiI	YATR	9 cut(s)	56, 68, 120, 125, 208, 245, 356, 402, 505
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	59, 166
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	59, 166
GluI	GCNGC	2 cut(s)	59, 166
HaeIII	GGCC	1 cut(s)	492
HgaI	GACGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	1 cut(s)	344
HphI	GGTGA	2 cut(s)	50, 440
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	5 cut(s)	86, 111, 337, 349, 430
Hpy188III	TCNNGA	4 cut(s)	30, 295, 309, 483
Hpy8I	GTNNAC	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	158, 332
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	1 cut(s)	58
HpyF3I	CTNAG	3 cut(s)	98, 254, 296
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	148, 273, 287, 368, 454
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	2 cut(s)	173, 305
Lsp1109I	GCAGC	2 cut(s)	70, 177
MabI	ACCWGGT	1 cut(s)	34
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	3 cut(s)	4, 181, 362
MalI	GATC	5 cut(s)	150, 275, 289, 370, 456
MboI	GATC	5 cut(s)	148, 273, 287, 368, 454
MboII	GAAGA	5 cut(s)	28, 143, 158, 297, 385
MflI	RGATCY	2 cut(s)	148, 287
MhlI	GDGCHC	1 cut(s)	302
MnlI	CCTC	2 cut(s)	313, 424
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	3 cut(s)	128, 267, 465
MslI	CAYNNNNRTG	2 cut(s)	405, 502
MspR9I	CCNGG	2 cut(s)	13, 36
MvaI	CCWGG	2 cut(s)	13, 36
NdeII	GATC	5 cut(s)	148, 273, 287, 368, 454
NlaIII	CATG	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	4, 362
PciSI	GCTCTTC	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	60, 167
PsiI	TTATAA	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	11, 34
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	2 cut(s)	11, 34
PspPI	GGNCC	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	148, 287
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	405, 502
SacI	GAGCTC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	128, 267, 465
SatI	GCNGC	2 cut(s)	59, 166
Sau3AI	GATC	5 cut(s)	148, 273, 287, 368, 454
Sau96I	GGNCC	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	13, 36
SduI	GDGCHC	1 cut(s)	302
SexAI	ACCWGGT	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	405, 502
SspI	AATATT	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	11, 34
TaaI	ACNGT	2 cut(s)	158, 332
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	3 cut(s)	276, 342, 371
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	128, 267, 465
Tru9I	TTAA	3 cut(s)	128, 267, 465
TscAI	CASTG	2 cut(s)	163, 429
TseFI	GTSAC	2 cut(s)	4, 362
TseI	GCWGC	2 cut(s)	58, 165
Tsp45I	GTSAC	2 cut(s)	4, 362
TspDTI	ATGAA	4 cut(s)	264, 294, 381, 434
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	163, 429
XmnI	GAANNNNTTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.