Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

21973467 .. 21975179

Gene Structure 1713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTGGGAGAACCACTTCACGATAATGCAGCAGAGGGAGATCAACATCAGAACTTACATCAAGCTGATCTTGAGGACATCACATTGCCTAAACGTTGATCCATCAGATGCACATGCAGACTTGTTTAACCGTCGTTATGAGAGATTTGAAATTGAGGGAGATGACTTAGACTTCACATCAGGAGAGCCAACACATATTGGACCACCTTCTCCAAGTAATCTAATACCTTCTCCACCTTGCCAAGATCAGCATCAGGATGGACTGCAGCCTGATAATGTGTCTGATGAAATGGTGCGGATGCAGGACGTTCAAAAGAATGCTCAACAAAGGCAGGGGCTTATAAGGAGATACAGGGAGAGGGCCCAGGTTTCGTTTGCAGCATCCACCTCTCGACCTCTGCTTCCAGAACAATTGTCATGGTCACCACCTGGAAGACAAACTTATCAAGACCCGGATGGTTATATTGTGTTGTCATCTGCAGTTCTTGCTACTCCTAATTTTGTAAAAGTTGAACAGAAGGCCCCGTACAAGGATATTCTCATTACTAGAGGACCAAATATGAGGGAACTCTGCTGGAATGTGGAAGTTGATGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

200

Amino Acids

22.88

Weight (kDa)

5.37

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	161 - 187	7.1e-07	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AciI	CCGC	1 cut(s)	295
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	149, 311, 512
AjnI	CCWGG	2 cut(s)	363, 427
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	360, 519
ApaI	GGGCCC	1 cut(s)	364
ApeKI	GCWGC	3 cut(s)	28, 265, 377
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	5 cut(s)	200, 360, 361, 520, 551
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	414
AvaII	GGWCC	2 cut(s)	200, 551
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	364
BarI	GAAGNNNNNNTAC	2 cut(s)	509, 541
BbsI	GAAGAC	1 cut(s)	439
BbvI	GCAGC	3 cut(s)	40, 277, 389
BccI	CCATC	3 cut(s)	109, 251, 449
BciT130I	CCWGG	2 cut(s)	365, 429
BcnI	CCSGG	1 cut(s)	452
BfaI	CTAG	2 cut(s)	546, 594
BfmI	CTRYAG	2 cut(s)	263, 477
BisI	GCNGC	3 cut(s)	29, 266, 378
BlsI	GCNGC	3 cut(s)	30, 267, 379
Bme1390I	CCNGG	3 cut(s)	365, 429, 452
Bme18I	GGWCC	2 cut(s)	200, 551
BmgT120I	GGNCC	5 cut(s)	200, 360, 361, 520, 551
BmiI	GGNNCC	2 cut(s)	362, 522
BmrFI	CCNGG	3 cut(s)	365, 429, 452
BmsI	GCATC	5 cut(s)	97, 259, 288, 389, 580
BpiI	GAAGAC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	452
BsaBI	GATNNNNATC	2 cut(s)	44, 249
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	82
Bse8I	GATNNNNATC	2 cut(s)	44, 249
BseBI	CCWGG	2 cut(s)	365, 429
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	4 cut(s)	262, 303, 380, 460
BseJI	GATNNNNATC	2 cut(s)	44, 249
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	40, 277, 389
BshFI	GGCC	2 cut(s)	362, 521
BsiSI	CCGG	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	362, 521
Bsp120I	GGGCCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	39, 66, 97, 244
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	362, 521
BspLI	GGNNCC	2 cut(s)	362, 522
BspMAI	CTGCAG	2 cut(s)	267, 481
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	4 cut(s)	39, 66, 97, 244
Bst2UI	CCWGG	2 cut(s)	365, 429
Bst4CI	ACNGT	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	420
BstF5I	GGATG	4 cut(s)	262, 303, 380, 460
BstKTI	GATC	4 cut(s)	42, 69, 100, 247
BstMBI	GATC	4 cut(s)	39, 66, 97, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	365, 429
BstNSI	RCATGY	1 cut(s)	116
BstPI	GGTNACC	1 cut(s)	420
BstSCI	CCNGG	3 cut(s)	363, 427, 450
BstSFI	CTRYAG	2 cut(s)	263, 477
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	40, 277, 389
BstV2I	GAAGAC	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	362, 521
BtsCI	GGATG	4 cut(s)	262, 303, 380, 460
Cfr13I	GGNCC	5 cut(s)	200, 360, 361, 520, 551
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	2 cut(s)	113, 417
CviJI	RGCY	6 cut(s)	64, 187, 268, 337, 362, 521
CviKI_1	RGCY	6 cut(s)	64, 187, 268, 337, 362, 521
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	4 cut(s)	41, 68, 99, 246
DpnII	GATC	4 cut(s)	39, 66, 97, 244
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	200, 551
Eco91I	GGTNACC	1 cut(s)	420
EcoO109I	RGGNCCY	2 cut(s)	360, 520
EcoO65I	GGTNACC	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	363, 427
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	2 cut(s)	116, 420
FaiI	YATR	7 cut(s)	114, 138, 195, 341, 418, 462, 560
FalI	AAGNNNNNCTT	4 cut(s)	53, 85, 424, 456
FatI	CATG	2 cut(s)	112, 416
Fnu4HI	GCNGC	3 cut(s)	29, 266, 378
FokI	GGATG	4 cut(s)	269, 310, 367, 467
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	3 cut(s)	29, 266, 378
FspBI	CTAG	2 cut(s)	546, 594
GluI	GCNGC	3 cut(s)	29, 266, 378
HaeIII	GGCC	2 cut(s)	362, 521
HapII	CCGG	1 cut(s)	452
Hin1II	CATG	2 cut(s)	116, 420
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	414
Hpy188I	TCNGA	3 cut(s)	50, 106, 283
Hpy188III	TCNNGA	7 cut(s)	19, 70, 180, 254, 390, 404, 446
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	3 cut(s)	216, 237, 511
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	2 cut(s)	93, 306
HpyCH4V	TGCA	7 cut(s)	28, 110, 116, 265, 301, 377, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	2 cut(s)	93, 306
Hsp92II	CATG	2 cut(s)	116, 420
Kzo9I	GATC	4 cut(s)	39, 66, 97, 244
Lsp1109I	GCAGC	3 cut(s)	40, 277, 389
LweI	GCATC	5 cut(s)	97, 259, 288, 389, 580
MaeI	CTAG	2 cut(s)	546, 594
MaeII	ACGT	2 cut(s)	93, 306
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	4 cut(s)	41, 68, 99, 246
MboI	GATC	4 cut(s)	39, 66, 97, 244
MboII	GAAGA	1 cut(s)	444
MfeI	CAATTG	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	3 cut(s)	150, 410, 496
MnlI	CCTC	8 cut(s)	27, 66, 148, 351, 397, 405, 542, 555
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	126, 598
MslI	CAYNNNNRTG	2 cut(s)	23, 255
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	3 cut(s)	365, 429, 452
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	365, 429
MwoI	GCNNNNNNNGC	1 cut(s)	485
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	4 cut(s)	39, 66, 97, 244
NlaIII	CATG	2 cut(s)	116, 420
NlaIV	GGNNCC	2 cut(s)	362, 522
NmuCI	GTSAC	1 cut(s)	420
NspI	RCATGY	1 cut(s)	116
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	30, 267, 379
PsiI	TTATAA	1 cut(s)	341
Psp1406I	AACGTT	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	363, 427
PspEI	GGTNACC	1 cut(s)	420
PspGI	CCWGG	2 cut(s)	363, 427
PspN4I	GGNNCC	2 cut(s)	362, 522
PspOMI	GGGCCC	1 cut(s)	360
PspPI	GGNCC	5 cut(s)	200, 360, 361, 520, 551
PstI	CTGCAG	2 cut(s)	267, 481
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	2 cut(s)	23, 255
SaqAI	TTAA	2 cut(s)	126, 598
SatI	GCNGC	3 cut(s)	29, 266, 378
Sau3AI	GATC	4 cut(s)	39, 66, 97, 244
Sau96I	GGNCC	5 cut(s)	200, 360, 361, 520, 551
ScrFI	CCNGG	3 cut(s)	365, 429, 452
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	5 cut(s)	97, 259, 288, 389, 580
SfcI	CTRYAG	2 cut(s)	263, 477
SinI	GGWCC	2 cut(s)	200, 551
SmiMI	CAYNNNNRTG	2 cut(s)	23, 255
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	3 cut(s)	150, 410, 496
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	2 cut(s)	546, 594
StyD4I	CCNGG	3 cut(s)	363, 427, 450
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	2 cut(s)	96, 309
TaqI	TCGA	1 cut(s)	391
TasI	AATT	3 cut(s)	150, 410, 496
Tru1I	TTAA	2 cut(s)	126, 598
Tru9I	TTAA	2 cut(s)	126, 598
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	3 cut(s)	28, 265, 377
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	200, 551
XceI	RCATGY	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	546, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.