Rmu_sc0002449.1_g000029

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002449.1
Physical Location & Seq
Forward (+)
104471 .. 107347
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002449.1_g000029.1.cds

Sequence Viewer

Length: 399 bp
atgtaccccacccctctctctctctcgcattcagctgatcctgaggatatcacattgcctaaatgttatgatccatcagatgcacatgcagatttgttcaaccctcgctttgagagatttgaaattgagggagataacgtagacctcacatcaggagagcccacacatattcgaccaccttctccaaattatctaataccttctccacctcgtcaagaccagcatcaggaaggacagcaggctaataatgtgtttgatgaagtggtgcagatgcaggatgttcaagagaatgctcaacaggggcagaggcctataaggaggagaaagagaaaaacacctgcctctgtaatggataatgaccaaacaatccatcaatttcaaatctggagatttcaatga

Protein Analysis

132

Amino Acids

15.32

Weight (kDa)

5.08

Isoelectric Point (pI)

63.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 346
AccI GTMKAC 1 cut(s) 141
AclWI GGATC 2 cut(s) 32, 65
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 5 cut(s) 100, 122, 284, 380, 395
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
AlwI GGATC 2 cut(s) 32, 65
AoxI GGCC 1 cut(s) 308
AxyI CCTNAGG 1 cut(s) 42
BanII GRGCYC 1 cut(s) 162
BccI CCATC 2 cut(s) 82, 378
BfuAI ACCTGC 1 cut(s) 346
BmsI GCATC 3 cut(s) 70, 232, 261
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse21I CCTNAGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 53
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 287
BshFI GGCC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 226
BsmI GAATGC 2 cut(s) 28, 295
BsnI GGCC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 37, 70
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 2 cut(s) 32, 65
BsrDI GCAATG 1 cut(s) 53
BssMI GATC 2 cut(s) 37, 70
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 2 cut(s) 40, 73
BstMBI GATC 2 cut(s) 37, 70
BstNSI RCATGY 1 cut(s) 89
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 283
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 86
CviJI RGCY 4 cut(s) 35, 160, 242, 310
CviKI_1 RGCY 4 cut(s) 35, 160, 242, 310
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 39, 72
DpnII GATC 2 cut(s) 37, 70
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 49
Eco81I CCTNAGG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 1 cut(s) 89
FaiI YATR 4 cut(s) 69, 87, 168, 314
FatI CATG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 141
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 310
Hin1II CATG 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 6 cut(s) 41, 153, 215, 227, 284, 385
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 3 cut(s) 189, 210, 224
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 83, 89, 268, 274
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 2 cut(s) 37, 70
LpnPI CCDG 9 cut(s) 54, 138, 212, 224, 233, 260, 284, 351, 370
LweI GCATC 3 cut(s) 70, 232, 261
MaeII ACGT 1 cut(s) 138
MalI GATC 2 cut(s) 39, 72
MboI GATC 2 cut(s) 37, 70
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 3 cut(s) 123, 187, 374
MnlI CCTC 9 cut(s) 24, 37, 114, 121, 155, 219, 300, 312, 352
MspA1I CMGCKG 1 cut(s) 35
Mva1269I GAATGC 2 cut(s) 28, 295
NdeII GATC 2 cut(s) 37, 70
NlaIII CATG 1 cut(s) 89
NspI RCATGY 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 310
PctI GAATGC 2 cut(s) 28, 295
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Sau3AI GATC 2 cut(s) 37, 70
SduI GDGCHC 1 cut(s) 162
SetI ASST 7 cut(s) 37, 141, 147, 181, 202, 211, 340
SfaNI GCATC 3 cut(s) 70, 232, 261
Sse9I AATT 3 cut(s) 123, 187, 374
SseBI AGGCCT 1 cut(s) 310
StuI AGGCCT 1 cut(s) 310
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 172
TasI AATT 3 cut(s) 123, 187, 374
TspDTI ATGAA 1 cut(s) 273
XceI RCATGY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.