Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATAAACTGAAAGCCAATCCTAATGGCATGAAAGGAGCTGATACCAACCCGGCAACACCAAGAAATTCTGGCGATGAGAGAAGATCCATCCTGAGCTCCTCATCTGGAAAGGGAGTTAACAGAAACAGTTCAGAAGTCAATTCTGGACGGAAGAGGCGTTATTCATCTATACATAGCAATGATGGACTTGAACCAGTATTAGAGGATAATGGATGTCAGCATTCTGATCCAAACTTCAACGTAATAAGGTTATCTGGAAATGGCCCAACACCTGAGCATGAATTATTGATGGAAACTGGACCGACACAGACACAACAACCTATCATCAATCAACCACTGGAAAAAGTGACTGATGCCATTCGAATGGAACTGAAATCCCATTTTGAAATACCGGGTGGCCCTCAAGTAGAATCCCTGAACAAACTGACTGCTGGAATGAATCGAAGAGGAGCGGCTATGCTTTTCTATCAAACTTGTGTTCTTGCTACTCGTGATTTCGTAAAAGTTAAACAAATTGCCCCTTATGAGGATGTTCTCATTACTAGAGGACCAAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

187

Amino Acids

20.53

Weight (kDa)

8.58

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	455
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	81, 224
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	194, 241, 389
AluBI	AGCT	2 cut(s)	41, 99
AluI	AGCT	2 cut(s)	41, 99
Alw21I	GWGCWC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	81, 224
AoxI	GGCC	2 cut(s)	265, 400
ApoI	RAATTY	1 cut(s)	67
Asp700I	GAANNNNTTC	1 cut(s)	130
AspS9I	GGNCC	4 cut(s)	266, 302, 401, 551
AsuC2I	CCSGG	2 cut(s)	53, 396
AsuII	TTCGAA	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	302, 551
BanII	GRGCYC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	3 cut(s)	98, 179, 286
BcnI	CCSGG	2 cut(s)	53, 396
BfaI	CTAG	1 cut(s)	546
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	53, 396
Bme18I	GGWCC	2 cut(s)	302, 551
BmgT120I	GGNCC	4 cut(s)	266, 302, 401, 551
BmrFI	CCNGG	2 cut(s)	53, 396
BmsI	GCATC	1 cut(s)	346
Bpu10I	CCTNAGC	2 cut(s)	95, 276
Bpu14I	TTCGAA	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	2 cut(s)	53, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	3 cut(s)	197, 304, 345
Bse3DI	GCAATG	1 cut(s)	187
BseGI	GGATG	3 cut(s)	90, 221, 538
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	86, 267
BseNI	ACTGG	3 cut(s)	197, 304, 345
BseRI	GAGGAG	2 cut(s)	91, 465
BshFI	GGCC	2 cut(s)	267, 402
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	53, 395
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	267, 402
Bsp119I	TTCGAA	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	86, 229
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	2 cut(s)	267, 402
BspCNI	CTCAG	2 cut(s)	87, 268
BspPI	GGATC	2 cut(s)	81, 224
BspT104I	TTCGAA	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	3 cut(s)	197, 304, 345
BssMI	GATC	2 cut(s)	86, 229
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	149, 442
BstBI	TTCGAA	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	95, 276
BstF5I	GGATG	3 cut(s)	90, 221, 538
BstKTI	GATC	2 cut(s)	89, 232
BstMBI	GATC	2 cut(s)	86, 229
BstSCI	CCNGG	2 cut(s)	51, 394
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	267, 402
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	90, 221, 538
BtsIMutI	CAGTG	1 cut(s)	338
Cfr13I	GGNCC	4 cut(s)	266, 302, 401, 551
CviAII	CATG	2 cut(s)	31, 281
CviJI	RGCY	6 cut(s)	17, 41, 99, 267, 402, 458
CviKI_1	RGCY	6 cut(s)	17, 41, 99, 267, 402, 458
DdeI	CTNAG	2 cut(s)	95, 276
DpnI	GATC	2 cut(s)	88, 231
DpnII	GATC	2 cut(s)	86, 229
Eam1104I	CTCTTC	2 cut(s)	149, 442
EarI	CTCTTC	2 cut(s)	149, 442
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	302, 551
Eco53kI	GAGCTC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	2 cut(s)	34, 284
FaiI	YATR	7 cut(s)	32, 173, 177, 282, 461, 528, 560
FatI	CATG	2 cut(s)	30, 280
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	3 cut(s)	77, 228, 545
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	267, 402
HapII	CCGG	2 cut(s)	53, 395
Hin1II	CATG	2 cut(s)	34, 284
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	413, 442
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	53, 395
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	136, 229
Hpy188III	TCNNGA	5 cut(s)	94, 108, 147, 258, 494
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	243
HpyF3I	CTNAG	2 cut(s)	95, 276
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	34, 284
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	86, 229
LmnI	GCTCC	3 cut(s)	38, 104, 452
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	88, 231
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	2 cut(s)	86, 229
MboII	GAAGA	3 cut(s)	96, 166, 459
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	4 cut(s)	67, 142, 284, 516
MnlI	CCTC	7 cut(s)	112, 150, 199, 414, 443, 523, 542
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	120, 510
MslI	CAYNNNNRTG	2 cut(s)	180, 365
MspI	CCGG	2 cut(s)	53, 395
MspR9I	CCNGG	2 cut(s)	53, 396
Mva1269I	GAATGC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	53, 396
NdeII	GATC	2 cut(s)	86, 229
NlaIII	CATG	2 cut(s)	34, 284
NmuCI	GTSAC	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PctI	GAATGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	413, 442
PkrI	GCNGC	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	101
PspPI	GGNCC	4 cut(s)	266, 302, 401, 551
PsuI	RGATCY	1 cut(s)	86
RseI	CAYNNNNRTG	2 cut(s)	180, 365
SacI	GAGCTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	120, 510
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	86, 229
Sau96I	GGNCC	4 cut(s)	266, 302, 401, 551
ScrFI	CCNGG	2 cut(s)	53, 396
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	6 cut(s)	43, 101, 246, 254, 277, 325
SfaNI	GCATC	1 cut(s)	346
SfuI	TTCGAA	1 cut(s)	364
SinI	GGWCC	2 cut(s)	302, 551
SmiMI	CAYNNNNRTG	2 cut(s)	180, 365
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	4 cut(s)	67, 142, 284, 516
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	51, 394
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	364, 445
TaqII	GACCGA	1 cut(s)	319
TasI	AATT	4 cut(s)	67, 142, 284, 516
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	413, 442
Tru1I	TTAA	2 cut(s)	120, 510
Tru9I	TTAA	2 cut(s)	120, 510
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	47, 156, 297, 455
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	302, 551
XapI	RAATTY	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.