Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

8287013 .. 8293108

Gene Structure 6096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGTTCTACTCTCACAGCCTCCTTGCTCGGAAAGAGCCGCTCGGCCAAATCTGGATGGCCGCCACCATGCACGCCAAGATGAACCGCAGGAATCTCAACCAGATCGACCTCATCAGAATCTGCGAAGAGATTCTGAATCCAAGAGCTCCTATGGCTCTCCGACTCTCCAGTATTCTCATGGGTGGAGTCGTCATCGTCTACGAACGTAAAGTGAAGCTCCTATTCGATGATGTGCACCGTCTTCTGGATGAATTAAACGAAGCATGGAAGAAGGTGAAATCCAACACAGACTCCACTATCCTACCCAAACGGAGAGCTCAGGCCAAGAAAGAAGCAATAACTCTGCCTGAGGCTGAGCACCAAGATACTGATCTTGTTGGTGACATCGAGCAGTCTCTTGATTTCTCTCACCATGCCACTCTTTTCCAGCAGCAAACCGGCTATTTTCTCATGCAACTGGATAGTGTAGATGTGGGAGAACCACTTAACGATAATGCAGCGGAGGGAGATCAACCTCAGAACTTACATCAAGCTGATCCTGAGGATATCACATTGCCTAAATGTTATGATCCATCAGATGCACTTGCAGATTTGTTCAACCCTCGCTTTGAGAGCATCAGGAAGGACAGCAGGCTAATAATGTGTTTTGATGAAGTGGTGCAGATGCAGGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACCAGGCTCTGTAATGGATAATGACCAAACAATCCATCCTGGACATGTGTACCAATCTTGGCTTCAAGATACTTCAGATATAGTTTCAAGAAGAAGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTCGTTTATTTAAACCTGGAAGTGGAGAAACATATTACCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCTGCATTCACCTCGCCACCTCTGCCTCTAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATCAAGACCTGCCTGTTGAAGATTTTCTTAGTGGAGGTGGCTCGCAGTCATTTGCAACTCCCACGGAACAGATACGGACAAATTTAGTTAACAATGACCGACAACATGAAGTGCTGGATGATCTGCGAGCCAATCTTATTGGCAAGAGAGGAGCTGATGCCAACCTGGCAACACCAAGGAATTCCGGAGATGAAAGAAGATCCGTCCTGAGCTCCTCATCTGGGAAGGGAGTTGACAAAAACATTTCAGAAGTCAATTCAGGACGTGTACTTGTGATTGGAGTACTGATGGTCACAGATCCAACAGGAAAAGGCGTTATTCATCTAAACATAGCAACGACAGACTTGAACCAGTGTCGGCCGGAGGATAATGGATATCATCACTCTGATCCAAACTTCAAGGTATCAAGGTTATCTGGAAATGGCCCAACACCTGAGCAAGAACTATTGATGGAAACTGGACCGACACAGACACAACAACCTATCATCAATCAGCCACTGGAAAAAGTGACTGATGCAATTCGAATGGAACTGAAATCCCATTTTGAAATACCGGGTGGCCCTCAAGTAGAATCCCTGAACAACCTGACTGCTGGACTGAATCGAAGAGGAGCGGCTTTGCTTTTCTATCAAACTTGTGTTCTTGCTACTCGTGATTTCGTAAAAGTTAAACAAAATGCCCCTTACGAGGATATTCTCATTACTAGAGGATCAAATATTGCTGCTACAGTTTTGCCTTTTCTTCTGGAACCTGGAGACGACGCGAGCAAGCAATCTGTTGGTAGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

616

Amino Acids

69.0

Weight (kDa)

6.1

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 103	3.3e-31	N terminus of Rad21 / Rec8 like protein
Rad21_Rec8	PF04824	541 - 592	9.1e-19	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1077
AccBSI	CCGCTC	2 cut(s)	40, 1673
AccI	GTMKAC	2 cut(s)	198, 854
AccII	CGCG	1 cut(s)	1823
AccIII	TCCGGA	1 cut(s)	1244
AciI	CCGC	5 cut(s)	38, 60, 85, 500, 1673
AclWI	GGATC	6 cut(s)	530, 563, 1254, 1352, 1442, 1777
AcoI	YGGCCR	3 cut(s)	43, 57, 1418
AcsI	RAATTY	2 cut(s)	1141, 1240
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	779, 1329, 1344
AfiI	CCNNNNNNNGG	4 cut(s)	244, 926, 1281, 1747
AflIII	ACRYGT	2 cut(s)	772, 1324
AgsI	TTSAA	9 cut(s)	598, 677, 794, 816, 967, 1079, 1408, 1459, 1607
AjiI	CACGTC	1 cut(s)	1325
AjnI	CCWGG	6 cut(s)	730, 766, 919, 1045, 1224, 1810
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
Alw21I	GWGCWC	5 cut(s)	148, 237, 319, 360, 1274
Alw26I	GTCTC	2 cut(s)	399, 1809
Alw44I	GTGCAC	1 cut(s)	233
AlwI	GGATC	6 cut(s)	530, 563, 1254, 1352, 1442, 1777
AlwNI	CAGNNNCTG	3 cut(s)	120, 737, 1558
Aor13HI	TCCGGA	1 cut(s)	1244
AoxI	GGCC	7 cut(s)	43, 57, 321, 701, 1418, 1483, 1618
ApaLI	GTGCAC	1 cut(s)	233
ApeKI	GCWGC	4 cut(s)	430, 497, 883, 1781
ApoI	RAATTY	2 cut(s)	1141, 1240
Asp700I	GAANNNNTTC	2 cut(s)	129, 1083
AspS9I	GGNCC	3 cut(s)	1484, 1520, 1619
AsuC2I	CCSGG	1 cut(s)	1614
AsuHPI	GGTGA	6 cut(s)	286, 392, 401, 981, 994, 1032
AsuII	TTCGAA	1 cut(s)	1582
AvaII	GGWCC	1 cut(s)	1520
AxyI	CCTNAGG	2 cut(s)	348, 540
BaeGI	GKGCMC	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	761, 794
BanII	GRGCYC	3 cut(s)	148, 319, 1274
BauI	CACGAG	1 cut(s)	1710
BbsI	GAAGAC	2 cut(s)	233, 1057
Bbv12I	GWGCWC	5 cut(s)	148, 237, 319, 360, 1274
BbvI	GCAGC	4 cut(s)	442, 509, 895, 1768
BccI	CCATC	6 cut(s)	49, 580, 771, 1036, 1342, 1504
BcgI	CGANNNNNNTGC	2 cut(s)	987, 1021
BciT130I	CCWGG	6 cut(s)	732, 768, 921, 1047, 1226, 1812
BcnI	CCSGG	1 cut(s)	1614
BcoDI	GTCTC	2 cut(s)	399, 1809
BfaI	CTAG	3 cut(s)	891, 1022, 1764
BfmI	CTRYAG	1 cut(s)	1785
BfuAI	ACCTGC	1 cut(s)	1077
BglI	GCCNNNNNGGC	1 cut(s)	1226
BisI	GCNGC	7 cut(s)	38, 60, 431, 498, 884, 1674, 1782
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	7 cut(s)	39, 61, 432, 499, 885, 1675, 1783
BmcAI	AGTACT	1 cut(s)	1344
Bme1390I	CCNGG	7 cut(s)	732, 768, 921, 1047, 1226, 1614, 1812
Bme18I	GGWCC	1 cut(s)	1520
BmgBI	CACGTC	1 cut(s)	1325
BmgT120I	GGNCC	3 cut(s)	1484, 1520, 1619
BmiI	GGNNCC	1 cut(s)	1809
BmrFI	CCNGG	7 cut(s)	732, 768, 921, 1047, 1226, 1614, 1812
BmsI	GCATC	5 cut(s)	568, 624, 654, 1207, 1564
BpiI	GAAGAC	2 cut(s)	233, 1057
BpmI	CTGGAG	2 cut(s)	151, 1833
Bpu10I	CCTNAGC	3 cut(s)	318, 1268, 1494
Bpu1102I	GCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	1582
BpuEI	CTTGAG	1 cut(s)	1608
BpuMI	CCSGG	1 cut(s)	1614
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	1122, 1235
BsaWI	WCCGGW	1 cut(s)	1244
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 926, 1281, 1747
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	5 cut(s)	168, 462, 1411, 1522, 1563
Bse21I	CCTNAGG	2 cut(s)	348, 540
Bse3DI	GCAATG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	1244
BseBI	CCWGG	6 cut(s)	732, 768, 921, 1047, 1226, 1812
BseDI	CCNNGG	2 cut(s)	1122, 1235
BseGI	GGATG	5 cut(s)	60, 253, 676, 763, 1183
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	244, 926, 1281, 1747
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	7 cut(s)	332, 339, 345, 530, 531, 1259, 1485
BseNI	ACTGG	5 cut(s)	168, 462, 1411, 1522, 1563
BseRI	GAGGAG	5 cut(s)	727, 939, 1224, 1264, 1683
BseSI	GKGCMC	1 cut(s)	237
BseX3I	CGGCCG	1 cut(s)	1418
BseXI	GCAGC	4 cut(s)	442, 509, 895, 1768
BseYI	CCCAGC	1 cut(s)	943
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	1823
Bsh1285I	CGRYCG	1 cut(s)	1421
BshFI	GGCC	7 cut(s)	45, 59, 323, 703, 1420, 1485, 1620
BsiEI	CGRYCG	1 cut(s)	1421
BsiHKAI	GWGCWC	5 cut(s)	148, 237, 319, 360, 1274
BsiSI	CCGG	4 cut(s)	438, 1245, 1421, 1613
BslI	CCNNNNNNNGG	4 cut(s)	244, 926, 1281, 1747
BsmAI	GTCTC	2 cut(s)	399, 1809
BsmBI	CGTCTC	1 cut(s)	1809
BsmI	GAATGC	2 cut(s)	688, 998
BsnI	GGCC	7 cut(s)	45, 59, 323, 703, 1420, 1485, 1620
Bsp119I	TTCGAA	1 cut(s)	1582
Bsp1286I	GDGCHC	5 cut(s)	148, 237, 319, 360, 1274
Bsp13I	TCCGGA	1 cut(s)	1244
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	5 cut(s)	38, 60, 85, 500, 1673
BspANI	GGCC	7 cut(s)	45, 59, 323, 703, 1420, 1485, 1620
BspCNI	CTCAG	7 cut(s)	331, 340, 346, 529, 532, 1260, 1486
BspEI	TCCGGA	1 cut(s)	1244
BspFNI	CGCG	1 cut(s)	1823
BspLI	GGNNCC	1 cut(s)	1809
BspMI	ACCTGC	1 cut(s)	1077
BspPI	GGATC	6 cut(s)	530, 563, 1254, 1352, 1442, 1777
BspT104I	TTCGAA	1 cut(s)	1582
BsrBI	CCGCTC	2 cut(s)	40, 1673
BsrDI	GCAATG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	5 cut(s)	168, 462, 1411, 1522, 1563
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	1122, 1235
BssSI	CACGAG	1 cut(s)	1710
BssT1I	CCWWGG	1 cut(s)	1235
Bst2BI	CACGAG	1 cut(s)	1710
Bst2UI	CCWGG	6 cut(s)	732, 768, 921, 1047, 1226, 1812
Bst4CI	ACNGT	2 cut(s)	239, 1789
Bst6I	CTCTTC	2 cut(s)	120, 1660
BstBI	TTCGAA	1 cut(s)	1582
BstC8I	GCNNGC	7 cut(s)	72, 632, 888, 1103, 1188, 1825, 1829
BstDEI	CTNAG	9 cut(s)	318, 348, 354, 516, 540, 955, 1088, 1268, 1494
BstDSI	CCRYGG	1 cut(s)	1122
BstEII	GGTNACC	1 cut(s)	1038
BstF5I	GGATG	5 cut(s)	60, 253, 676, 763, 1183
BstFNI	CGCG	1 cut(s)	1823
BstMAI	GTCTC	2 cut(s)	399, 1809
BstMCI	CGRYCG	1 cut(s)	1421
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 612, 1015, 1226
BstNI	CCWGG	6 cut(s)	732, 768, 921, 1047, 1226, 1812
BstNSI	RCATGY	1 cut(s)	776
BstPI	GGTNACC	1 cut(s)	1038
BstSCI	CCNGG	7 cut(s)	730, 766, 919, 1045, 1224, 1612, 1810
BstSFI	CTRYAG	1 cut(s)	1785
BstSLI	GKGCMC	1 cut(s)	237
BstUI	CGCG	1 cut(s)	1823
BstV1I	GCAGC	4 cut(s)	442, 509, 895, 1768
BstV2I	GAAGAC	2 cut(s)	233, 1057
BstX2I	RGATCY	2 cut(s)	1259, 1357
BstXI	CCANNNNNNTGG	1 cut(s)	1035
BstYI	RGATCY	2 cut(s)	1259, 1357
BstZI	CGGCCG	1 cut(s)	1418
Bsu36I	CCTNAGG	2 cut(s)	348, 540
BsuRI	GGCC	7 cut(s)	45, 59, 323, 703, 1420, 1485, 1620
BtgI	CCRYGG	1 cut(s)	1122
BtrI	CACGTC	1 cut(s)	1325
BtsCI	GGATG	5 cut(s)	60, 253, 676, 763, 1183
BtsIMutI	CAGTG	2 cut(s)	1418, 1556
BveI	ACCTGC	1 cut(s)	1077
Cac8I	GCNNGC	7 cut(s)	72, 632, 888, 1103, 1188, 1825, 1829
CaiI	CAGNNNCTG	3 cut(s)	120, 737, 1558
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	3 cut(s)	1484, 1520, 1619
CseI	GACGC	1 cut(s)	1829
Csp6I	GTAC	3 cut(s)	778, 1328, 1343
CviQI	GTAC	3 cut(s)	778, 1328, 1343
DdeI	CTNAG	9 cut(s)	318, 348, 354, 516, 540, 955, 1088, 1268, 1494
DraI	TTTAAA	1 cut(s)	916
EaeI	YGGCCR	3 cut(s)	43, 57, 1418
EagI	CGGCCG	1 cut(s)	1418
Eam1104I	CTCTTC	2 cut(s)	120, 1660
EarI	CTCTTC	2 cut(s)	120, 1660
Ecl136II	GAGCTC	3 cut(s)	146, 317, 1272
EclXI	CGGCCG	1 cut(s)	1418
Eco130I	CCWWGG	1 cut(s)	1235
Eco147I	AGGCCT	1 cut(s)	703
Eco24I	GRGCYC	3 cut(s)	148, 319, 1274
Eco32I	GATATC	2 cut(s)	547, 1436
Eco47I	GGWCC	1 cut(s)	1520
Eco52I	CGGCCG	1 cut(s)	1418
Eco53kI	GAGCTC	3 cut(s)	146, 317, 1272
Eco57I	CTGAAG	1 cut(s)	786
Eco81I	CCTNAGG	2 cut(s)	348, 540
Eco91I	GGTNACC	1 cut(s)	1038
EcoICRI	GAGCTC	3 cut(s)	146, 317, 1272
EcoO65I	GGTNACC	1 cut(s)	1038
EcoRI	GAATTC	1 cut(s)	1240
EcoRII	CCWGG	6 cut(s)	730, 766, 919, 1045, 1224, 1810
EcoRV	GATATC	2 cut(s)	547, 1436
EcoT14I	CCWWGG	1 cut(s)	1235
EcoT38I	GRGCYC	3 cut(s)	148, 319, 1274
ErhI	CCWWGG	1 cut(s)	1235
Esp3I	CGTCTC	1 cut(s)	1809
FalI	AAGNNNNNCTT	4 cut(s)	1042, 1074, 1071, 1103
FblI	GTMKAC	2 cut(s)	198, 854
Fnu4HI	GCNGC	7 cut(s)	38, 60, 431, 498, 884, 1674, 1782
FokI	GGATG	5 cut(s)	67, 260, 683, 750, 1190
FriOI	GRGCYC	3 cut(s)	148, 319, 1274
Fsp4HI	GCNGC	7 cut(s)	38, 60, 431, 498, 884, 1674, 1782
FspBI	CTAG	3 cut(s)	891, 1022, 1764
GluI	GCNGC	7 cut(s)	38, 60, 431, 498, 884, 1674, 1782
GsaI	CCCAGC	1 cut(s)	947
GsuI	CTGGAG	2 cut(s)	151, 1833
HaeIII	GGCC	7 cut(s)	45, 59, 323, 703, 1420, 1485, 1620
HapII	CCGG	4 cut(s)	438, 1245, 1421, 1613
HgaI	GACGC	1 cut(s)	1829
HincII	GTYRAC	2 cut(s)	1150, 1294
HindII	GTYRAC	2 cut(s)	1150, 1294
HpaI	GTTAAC	1 cut(s)	1150
HpaII	CCGG	4 cut(s)	438, 1245, 1421, 1613
HphI	GGTGA	6 cut(s)	286, 392, 401, 981, 994, 1032
Hpy166II	GTNNAC	8 cut(s)	199, 235, 778, 855, 872, 1150, 1294, 1328
Hpy188I	TCNGA	9 cut(s)	30, 116, 135, 161, 519, 577, 805, 1309, 1447
Hpy8I	GTNNAC	8 cut(s)	199, 235, 778, 855, 872, 1150, 1294, 1328
Hpy99I	CGWCG	1 cut(s)	1823
HpyAV	CCTTC	4 cut(s)	265, 616, 1002, 1279
HpyCH4III	ACNGT	2 cut(s)	239, 1789
HpyCH4IV	ACGT	2 cut(s)	205, 1324
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 612, 1015, 1226
HpyF3I	CTNAG	9 cut(s)	318, 348, 354, 516, 540, 955, 1088, 1268, 1494
HpySE526I	ACGT	2 cut(s)	205, 1324
Kpn2I	TCCGGA	1 cut(s)	1244
KspAI	GTTAAC	1 cut(s)	1150
LmnI	GCTCC	7 cut(s)	151, 222, 880, 952, 1211, 1277, 1670
Lsp1109I	GCAGC	4 cut(s)	442, 509, 895, 1768
LweI	GCATC	5 cut(s)	568, 624, 654, 1207, 1564
MaeI	CTAG	3 cut(s)	891, 1022, 1764
MaeII	ACGT	2 cut(s)	205, 1324
MaeIII	GTNAC	4 cut(s)	380, 1038, 1351, 1567
MbiI	CCGCTC	2 cut(s)	40, 1673
MflI	RGATCY	2 cut(s)	1259, 1357
MhlI	GDGCHC	5 cut(s)	148, 237, 319, 360, 1274
MluCI	AATT	5 cut(s)	251, 1141, 1240, 1315, 1578
MlyI	GAGTC	4 cut(s)	156, 195, 284, 980
MmeI	TCCRAC	3 cut(s)	184, 306, 1385
MroI	TCCGGA	1 cut(s)	1244
MroXI	GAANNNNTTC	2 cut(s)	129, 1083
MseI	TTAA	5 cut(s)	254, 486, 915, 1149, 1728
MslI	CAYNNNNRTG	2 cut(s)	981, 1033
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	4 cut(s)	438, 1245, 1421, 1613
MspR9I	CCNGG	7 cut(s)	732, 768, 921, 1047, 1226, 1614, 1812
Mva1269I	GAATGC	2 cut(s)	688, 998
MvaI	CCWGG	6 cut(s)	732, 768, 921, 1047, 1226, 1812
MvnI	CGCG	1 cut(s)	1823
MwoI	GCNNNNNNNGC	4 cut(s)	152, 612, 1015, 1226
NciI	CCSGG	1 cut(s)	1614
NlaIV	GGNNCC	1 cut(s)	1809
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	4 cut(s)	380, 1038, 1351, 1567
NspI	RCATGY	1 cut(s)	776
NspV	TTCGAA	1 cut(s)	1582
PceI	AGGCCT	1 cut(s)	703
PciI	ACATGT	1 cut(s)	772
PctI	GAATGC	2 cut(s)	688, 998
PdmI	GAANNNNTTC	2 cut(s)	129, 1083
PfeI	GAWTC	6 cut(s)	91, 117, 130, 136, 1631, 1660
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	7 cut(s)	39, 61, 432, 499, 885, 1675, 1783
PleI	GAGTC	4 cut(s)	156, 194, 284, 980
PpsI	GAGTC	4 cut(s)	156, 194, 284, 980
PscI	ACATGT	1 cut(s)	772
Psp124BI	GAGCTC	3 cut(s)	148, 319, 1274
Psp6I	CCWGG	6 cut(s)	730, 766, 919, 1045, 1224, 1810
PspEI	GGTNACC	1 cut(s)	1038
PspFI	CCCAGC	1 cut(s)	943
PspGI	CCWGG	6 cut(s)	730, 766, 919, 1045, 1224, 1810
PspN4I	GGNNCC	1 cut(s)	1809
PspPI	GGNCC	3 cut(s)	1484, 1520, 1619
PstNI	CAGNNNCTG	3 cut(s)	120, 737, 1558
PsuI	RGATCY	2 cut(s)	1259, 1357
RsaI	GTAC	3 cut(s)	779, 1329, 1344
RsaNI	GTAC	3 cut(s)	778, 1328, 1343
RseI	CAYNNNNRTG	2 cut(s)	981, 1033
SacI	GAGCTC	3 cut(s)	148, 319, 1274
SaqAI	TTAA	5 cut(s)	254, 486, 915, 1149, 1728
SatI	GCNGC	7 cut(s)	38, 60, 431, 498, 884, 1674, 1782
Sau96I	GGNCC	3 cut(s)	1484, 1520, 1619
ScaI	AGTACT	1 cut(s)	1344
SchI	GAGTC	4 cut(s)	156, 195, 284, 980
ScrFI	CCNGG	7 cut(s)	732, 768, 921, 1047, 1226, 1614, 1812
SduI	GDGCHC	5 cut(s)	148, 237, 319, 360, 1274
SfaNI	GCATC	5 cut(s)	568, 624, 654, 1207, 1564
SfcI	CTRYAG	1 cut(s)	1785
SfuI	TTCGAA	1 cut(s)	1582
SinI	GGWCC	1 cut(s)	1520
SmiMI	CAYNNNNRTG	2 cut(s)	981, 1033
SmlI	CTYRAG	1 cut(s)	1623
SmoI	CTYRAG	1 cut(s)	1623
Sse9I	AATT	5 cut(s)	251, 1141, 1240, 1315, 1578
SseBI	AGGCCT	1 cut(s)	703
SsiI	CCGC	5 cut(s)	38, 60, 85, 500, 1673
SspI	AATATT	1 cut(s)	1777
SspMI	CTAG	3 cut(s)	891, 1022, 1764
SstI	GAGCTC	3 cut(s)	148, 319, 1274
StuI	AGGCCT	1 cut(s)	703
StyD4I	CCNGG	7 cut(s)	730, 766, 919, 1045, 1224, 1612, 1810
StyI	CCWWGG	1 cut(s)	1235
TaaI	ACNGT	2 cut(s)	239, 1789
TaiI	ACGT	2 cut(s)	208, 1327
TaqI	TCGA	5 cut(s)	105, 225, 387, 1582, 1663
TaqII	GACCGA	2 cut(s)	1173, 1537
TasI	AATT	5 cut(s)	251, 1141, 1240, 1315, 1578
TatI	WGTACW	2 cut(s)	1327, 1342
TauI	GCSGC	3 cut(s)	40, 62, 1676
TfiI	GAWTC	6 cut(s)	91, 117, 130, 136, 1631, 1660
Tru1I	TTAA	5 cut(s)	254, 486, 915, 1149, 1728
Tru9I	TTAA	5 cut(s)	254, 486, 915, 1149, 1728
TscAI	CASTG	2 cut(s)	1418, 1563
TseFI	GTSAC	4 cut(s)	380, 1038, 1351, 1567
TseI	GCWGC	4 cut(s)	430, 497, 883, 1781
Tsp45I	GTSAC	4 cut(s)	380, 1038, 1351, 1567
TspDTI	ATGAA	7 cut(s)	95, 264, 666, 875, 1182, 1266, 1370
TspGWI	ACGGA	4 cut(s)	325, 1139, 1150, 1252
TspRI	CASTG	2 cut(s)	1418, 1563
VneI	GTGCAC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	1520
XapI	RAATTY	2 cut(s)	1141, 1240
XbaI	TCTAGA	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	2 cut(s)	198, 854
XmnI	GAANNNNTTC	2 cut(s)	129, 1083
XspI	CTAG	3 cut(s)	891, 1022, 1764
ZrmI	AGTACT	1 cut(s)	1344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.