Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010983.1

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 550

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010983.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 172 bp

atggccgccaccatgcacgccaagatgaaccgcaggaatctctaccagatcgacctcatcagaatctgcgaagagattctgaatccaagagctcctatggctctccgactctccagtattctcatgggtggagtcgtcatcgtctacgaacgtaaagtgaagctcctattcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

57

Amino Acids

6.6

Weight (kDa)

10.17

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	2 cut(s)	6, 31
AcoI	YGGCCR	1 cut(s)	3
AluBI	AGCT	2 cut(s)	92, 163
AluI	AGCT	2 cut(s)	92, 163
Alw21I	GWGCWC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	3
Asp700I	GAANNNNTTC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BpmI	CTGGAG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	6, 31
BspANI	GGCC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	18
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	66
CviAII	CATG	2 cut(s)	13, 124
CviJI	RGCY	4 cut(s)	5, 92, 101, 163
CviKI_1	RGCY	4 cut(s)	5, 92, 101, 163
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	2 cut(s)	16, 127
FaiI	YATR	3 cut(s)	14, 98, 125
FatI	CATG	2 cut(s)	12, 123
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	16, 127
HinfI	GANTC	6 cut(s)	37, 63, 76, 82, 108, 132
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	62, 81, 107
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	16, 127
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	97, 168
LpnPI	CCDG	3 cut(s)	19, 59, 127
MaeII	ACGT	1 cut(s)	151
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	94
MlyI	GAGTC	2 cut(s)	102, 141
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	16, 127
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	4 cut(s)	37, 63, 76, 82
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	102, 140
PpsI	GAGTC	2 cut(s)	102, 140
Psp124BI	GAGCTC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	94
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	2 cut(s)	102, 141
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	4 cut(s)	57, 94, 154, 165
SgeI	CNNG	8 cut(s)	25, 29, 34, 46, 58, 99, 126, 136
SsiI	CCGC	2 cut(s)	6, 31
SstI	GAGCTC	1 cut(s)	94
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	51
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	37, 63, 76, 82
TspDTI	ATGAA	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.