Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010974.1

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2887

Gene Structure 2887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010974.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 827 bp

cattaacctcgccacctctgcctccagaaccatcatcatggtcaccacctgaaaaacaaacttatcacgacccgcctgttgaagattttcttagtggaggtggctcccagtcatttgtaacccccacagaacagatacggacaaatttagttaacaatgacgtaacactacaacctgaactcatggataaactgaaagccaatcctaatggcatgaaaggagctgataccaacccggcaacaccaagaaattctggcgatgagagaagatccatcctgagctcctcatctggaaagggagttaacagaaacagttcagaagtcaattctggacggaagaggcgttattcatctatacatagcaatgatggacttgaaccagtattagaggataatggatgtcagcattctgatccaaacttcaacgtaataaggttatctggaaatggcccaacacctgagcatgaattattgatggaaactggaccgacacagacacaacaacctatcatcaatcaaccactggaaaaagtgactgatgcaattcgaatggaactgaaatcccattttgaaataccgggtggccctcaagtagaatccctgaacaaactgactgccggaatgaatcgaagaggagcggctatgcttttctatcaaacttgtggtaggaatccatactatctttcccttcctgcttatgttatgcgcttgttcttacgaactgcttgtgttctgtcatctgcagttcttgctactcgtgatttcgtaaaagttaaacaaattgccccttatgaggatgttctcattactagaggaccaaatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

274

Amino Acids

30.13

Weight (kDa)

6.6

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	637
AciI	CCGC	2 cut(s)	73, 637
AclWI	GGATC	2 cut(s)	263, 406
AcsI	RAATTY	2 cut(s)	144, 249
AfiI	CCNNNNNNNGG	1 cut(s)	792
AgsI	TTSAA	4 cut(s)	82, 376, 423, 571
AluBI	AGCT	2 cut(s)	223, 281
AluI	AGCT	2 cut(s)	223, 281
Alw21I	GWGCWC	1 cut(s)	283
AlwI	GGATC	2 cut(s)	263, 406
AoxI	GGCC	2 cut(s)	447, 582
ApoI	RAATTY	2 cut(s)	144, 249
Asp700I	GAANNNNTTC	2 cut(s)	86, 312
AspLEI	GCGC	1 cut(s)	707
AspS9I	GGNCC	4 cut(s)	448, 484, 583, 814
AsuC2I	CCSGG	2 cut(s)	235, 578
AsuHPI	GGTGA	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	546
AvaII	GGWCC	2 cut(s)	484, 814
BanII	GRGCYC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	755
Bbv12I	GWGCWC	1 cut(s)	283
BccI	CCATC	4 cut(s)	39, 280, 361, 468
BcnI	CCSGG	2 cut(s)	235, 578
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	1 cut(s)	740
BisI	GCNGC	1 cut(s)	638
BlsI	GCNGC	1 cut(s)	639
Bme1390I	CCNGG	2 cut(s)	235, 578
Bme18I	GGWCC	2 cut(s)	484, 814
BmgT120I	GGNCC	4 cut(s)	448, 484, 583, 814
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	235, 578
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	8
Bpu10I	CCTNAGC	2 cut(s)	277, 458
Bpu14I	TTCGAA	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	235, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse1I	ACTGG	4 cut(s)	108, 379, 486, 527
Bse3DI	GCAATG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	272, 403, 801
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	268, 449
BseNI	ACTGG	4 cut(s)	108, 379, 486, 527
BseRI	GAGGAG	2 cut(s)	273, 647
BshFI	GGCC	2 cut(s)	449, 584
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	3 cut(s)	235, 577, 617
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	449, 584
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	268, 411
BspACI	CCGC	2 cut(s)	73, 637
BspANI	GGCC	2 cut(s)	449, 584
BspCNI	CTCAG	2 cut(s)	269, 450
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	2 cut(s)	263, 406
BspT104I	TTCGAA	1 cut(s)	546
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	4 cut(s)	108, 379, 486, 527
BssMI	GATC	2 cut(s)	268, 411
BssSI	CACGAG	1 cut(s)	755
Bst2BI	CACGAG	1 cut(s)	755
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	2 cut(s)	331, 624
BstAPI	GCANNNNNTGC	1 cut(s)	748
BstBI	TTCGAA	1 cut(s)	546
BstDEI	CTNAG	3 cut(s)	91, 277, 458
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	3 cut(s)	272, 403, 801
BstHHI	GCGC	1 cut(s)	707
BstKTI	GATC	2 cut(s)	271, 414
BstMBI	GATC	2 cut(s)	268, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 748
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	233, 576
BstSFI	CTRYAG	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	449, 584
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	3 cut(s)	272, 403, 801
BtsIMutI	CAGTG	1 cut(s)	520
CfoI	GCGC	1 cut(s)	707
Cfr13I	GGNCC	4 cut(s)	448, 484, 583, 814
CviAII	CATG	4 cut(s)	38, 183, 213, 463
CviJI	RGCY	7 cut(s)	104, 199, 223, 281, 449, 584, 640
CviKI_1	RGCY	7 cut(s)	104, 199, 223, 281, 449, 584, 640
DdeI	CTNAG	3 cut(s)	91, 277, 458
DpnI	GATC	2 cut(s)	270, 413
DpnII	GATC	2 cut(s)	268, 411
Eam1104I	CTCTTC	2 cut(s)	331, 624
EarI	CTCTTC	2 cut(s)	331, 624
Ecl136II	GAGCTC	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	283
Eco47I	GGWCC	2 cut(s)	484, 814
Eco53kI	GAGCTC	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	4 cut(s)	41, 186, 216, 466
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	4 cut(s)	37, 182, 212, 462
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	638
FokI	GGATG	3 cut(s)	259, 410, 808
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	638
FspBI	CTAG	1 cut(s)	809
GlaI	GCGC	1 cut(s)	706
GluI	GCNGC	1 cut(s)	638
GsuI	CTGGAG	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	449, 584
HapII	CCGG	3 cut(s)	235, 577, 617
HhaI	GCGC	1 cut(s)	707
Hin1II	CATG	4 cut(s)	41, 186, 216, 466
Hin6I	GCGC	1 cut(s)	705
HinP1I	GCGC	1 cut(s)	705
HincII	GTYRAC	2 cut(s)	153, 303
HindII	GTYRAC	2 cut(s)	153, 303
HinfI	GANTC	3 cut(s)	595, 624, 669
HpaI	GTTAAC	2 cut(s)	153, 303
HpaII	CCGG	3 cut(s)	235, 577, 617
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	153, 303
Hpy188I	TCNGA	2 cut(s)	318, 411
Hpy188III	TCNNGA	7 cut(s)	25, 67, 276, 290, 329, 440, 757
Hpy8I	GTNNAC	2 cut(s)	153, 303
HpyAV	CCTTC	1 cut(s)	697
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	2 cut(s)	161, 425
HpyCH4V	TGCA	2 cut(s)	541, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 748
HpyF3I	CTNAG	3 cut(s)	91, 277, 458
HpySE526I	ACGT	2 cut(s)	161, 425
Hsp92II	CATG	4 cut(s)	41, 186, 216, 466
HspAI	GCGC	1 cut(s)	705
KspAI	GTTAAC	2 cut(s)	153, 303
Kzo9I	GATC	2 cut(s)	268, 411
LmnI	GCTCC	4 cut(s)	109, 220, 286, 634
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	2 cut(s)	161, 425
MaeIII	GTNAC	4 cut(s)	41, 117, 162, 531
MalI	GATC	2 cut(s)	270, 413
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	2 cut(s)	268, 411
MboII	GAAGA	4 cut(s)	94, 278, 348, 641
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	6 cut(s)	144, 249, 324, 466, 542, 779
MroXI	GAANNNNTTC	2 cut(s)	86, 312
MseI	TTAA	4 cut(s)	4, 152, 302, 773
MslI	CAYNNNNRTG	2 cut(s)	36, 362
MspI	CCGG	3 cut(s)	235, 577, 617
MspR9I	CCNGG	2 cut(s)	235, 578
Mva1269I	GAATGC	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	18, 748
NciI	CCSGG	2 cut(s)	235, 578
NdeII	GATC	2 cut(s)	268, 411
NlaIII	CATG	4 cut(s)	41, 186, 216, 466
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	41, 531
NspV	TTCGAA	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	405
PdmI	GAANNNNTTC	2 cut(s)	86, 312
PfeI	GAWTC	3 cut(s)	595, 624, 669
PkrI	GCNGC	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	4 cut(s)	448, 484, 583, 814
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	36, 362
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	4 cut(s)	4, 152, 302, 773
SatI	GCNGC	1 cut(s)	638
Sau3AI	GATC	2 cut(s)	268, 411
Sau96I	GGNCC	4 cut(s)	448, 484, 583, 814
ScrFI	CCNGG	2 cut(s)	235, 578
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	1 cut(s)	740
SfuI	TTCGAA	1 cut(s)	546
SinI	GGWCC	2 cut(s)	484, 814
SmiMI	CAYNNNNRTG	2 cut(s)	36, 362
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	6 cut(s)	144, 249, 324, 466, 542, 779
SsiI	CCGC	2 cut(s)	73, 637
SspMI	CTAG	1 cut(s)	809
SstI	GAGCTC	1 cut(s)	283
StyD4I	CCNGG	2 cut(s)	233, 576
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	2 cut(s)	164, 428
TaqI	TCGA	2 cut(s)	546, 627
TaqII	GACCGA	1 cut(s)	501
TasI	AATT	6 cut(s)	144, 249, 324, 466, 542, 779
TauI	GCSGC	1 cut(s)	640
TfiI	GAWTC	3 cut(s)	595, 624, 669
Tru1I	TTAA	4 cut(s)	4, 152, 302, 773
Tru9I	TTAA	4 cut(s)	4, 152, 302, 773
TscAI	CASTG	1 cut(s)	527
TseFI	GTSAC	2 cut(s)	41, 531
Tsp45I	GTSAC	2 cut(s)	41, 531
TspDTI	ATGAA	4 cut(s)	229, 338, 479, 637
TspGWI	ACGGA	2 cut(s)	153, 348
TspRI	CASTG	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	484, 814
XapI	RAATTY	2 cut(s)	144, 249
XmnI	GAANNNNTTC	2 cut(s)	86, 312
XspI	CTAG	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.