Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

47559201 .. 47563110

Gene Structure 3910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTGGGAGAACCACTTAACGATAATGCAGCGGAGGGAGATCATCATCAGAACTTACATCAAGGTCCTTTCTTATTCATTTACTGATCCTGAGGATATCACATTGCCTAAATGTTATGATCCATCAGTTGCACATGCAGATTTGTTCAACCCTCGCTTTGAGAGATTTGAAATTGAGGGAGATAACGTAGACCTCACATCAGGAGAGCCCACACATATTCGACCACCTTCCCCAAATTATCTAATACCTTCTCCACCTCGTCAAGACCAGCATCAGGAAGGACAGCAGGCTAATAATGTGTTTGATGAAGTGGTGCAGATGCAGGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACCTGCCTCTGTAATGGATAATGACCAAACAATCCATCCTGGACATGTGTACCAATCTTGGCTTCAAGATACTTCAGATATAGTTTCAAGAAGAAGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTCGTTTATTTAAACTTGGGAGTGGAGAAACATATTATCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCTGCATTCACCTTGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATCAAGACCTGCCTGTTGAAGATTTTCTTAGTGGAGGTGGCTCCCAGTCATTTGCAACTCCCACGGAACAGATACGGACAAATTTAGTTAAGAATGACCAACGACATGAAGTGCTGGATGATCTGCGAGCCAATCTTATTGGCAAGAGAGGAGCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

291

Amino Acids

33.4

Weight (kDa)

6.77

Isoelectric Point (pI)

68.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	2 cut(s)	394, 732
AccI	GTMKAC	2 cut(s)	189, 509
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	80, 113
AcsI	RAATTY	1 cut(s)	796
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	7 cut(s)	148, 170, 332, 449, 471, 622, 734
AjnI	CCWGG	2 cut(s)	421, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	4 cut(s)	545, 602, 616, 869
AluI	AGCT	4 cut(s)	545, 602, 616, 869
AlwI	GGATC	2 cut(s)	80, 113
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	28, 538
ApoI	RAATTY	1 cut(s)	796
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	3 cut(s)	636, 649, 687
AvaII	GGWCC	1 cut(s)	64
AxyI	CCTNAGG	1 cut(s)	90
BaeI	ACNNNNGTAYC	2 cut(s)	416, 449
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	712
BbvI	GCAGC	2 cut(s)	40, 550
BccI	CCATC	3 cut(s)	130, 426, 691
BciT130I	CCWGG	2 cut(s)	423, 702
BfaI	CTAG	1 cut(s)	546
BfuAI	ACCTGC	2 cut(s)	394, 732
BisI	GCNGC	2 cut(s)	29, 539
BlsI	GCNGC	2 cut(s)	30, 540
Bme1390I	CCNGG	2 cut(s)	423, 702
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	2 cut(s)	423, 702
BmrI	ACTGGG	1 cut(s)	754
BmsI	GCATC	2 cut(s)	280, 309
BmuI	ACTGGG	1 cut(s)	754
BpiI	GAAGAC	1 cut(s)	712
BpmI	CTGGAG	1 cut(s)	660
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	777
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	760
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	423, 702
BseDI	CCNNGG	1 cut(s)	777
BseGI	GGATG	3 cut(s)	331, 418, 838
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	2 cut(s)	382, 594
BseXI	GCAGC	2 cut(s)	40, 550
BsgI	GTGCAG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmI	GAATGC	2 cut(s)	343, 653
BsnI	GGCC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	39, 85, 118, 835
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	757
BspMI	ACCTGC	2 cut(s)	394, 732
BspPI	GGATC	2 cut(s)	80, 113
BsrDI	GCAATG	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	760
BssECI	CCNNGG	1 cut(s)	777
BssMI	GATC	4 cut(s)	39, 85, 118, 835
Bst2UI	CCWGG	2 cut(s)	423, 702
BstC8I	GCNNGC	3 cut(s)	288, 543, 843
BstDEI	CTNAG	3 cut(s)	90, 610, 743
BstDSI	CCRYGG	1 cut(s)	777
BstEII	GGTNACC	1 cut(s)	693
BstF5I	GGATG	3 cut(s)	331, 418, 838
BstKTI	GATC	4 cut(s)	42, 88, 121, 838
BstMBI	GATC	4 cut(s)	39, 85, 118, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	670
BstNI	CCWGG	2 cut(s)	423, 702
BstNSI	RCATGY	2 cut(s)	137, 431
BstPI	GGTNACC	1 cut(s)	693
BstSCI	CCNGG	2 cut(s)	421, 700
BstV1I	GCAGC	2 cut(s)	40, 550
BstV2I	GAAGAC	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	690
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	3 cut(s)	331, 418, 838
BveI	ACCTGC	2 cut(s)	394, 732
Cac8I	GCNNGC	3 cut(s)	288, 543, 843
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	7 cut(s)	134, 428, 532, 556, 638, 690, 821
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	90, 610, 743
DpnI	GATC	4 cut(s)	41, 87, 120, 837
DpnII	GATC	4 cut(s)	39, 85, 118, 835
DraI	TTTAAA	1 cut(s)	571
Eco147I	AGGCCT	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	441
Eco81I	CCTNAGG	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	693
EcoRII	CCWGG	2 cut(s)	421, 700
EcoRV	GATATC	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	7 cut(s)	137, 431, 535, 559, 641, 693, 824
FalI	AAGNNNNNCTT	4 cut(s)	697, 729, 726, 758
FatI	CATG	7 cut(s)	133, 427, 531, 555, 637, 689, 820
FblI	GTMKAC	2 cut(s)	189, 509
Fnu4HI	GCNGC	2 cut(s)	29, 539
FokI	GGATG	3 cut(s)	338, 405, 845
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	29, 539
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	2 cut(s)	29, 539
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	358
Hin1II	CATG	7 cut(s)	137, 431, 535, 559, 641, 693, 824
HinfI	GANTC	1 cut(s)	641
HphI	GGTGA	3 cut(s)	636, 649, 687
Hpy166II	GTNNAC	4 cut(s)	190, 433, 510, 527
Hpy188I	TCNGA	2 cut(s)	50, 460
Hpy188III	TCNNGA	9 cut(s)	89, 201, 263, 275, 332, 449, 471, 677, 719
Hpy8I	GTNNAC	4 cut(s)	190, 433, 510, 527
HpyAV	CCTTC	4 cut(s)	237, 258, 272, 657
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	7 cut(s)	28, 131, 137, 316, 322, 653, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	670
HpyF3I	CTNAG	3 cut(s)	90, 610, 743
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	7 cut(s)	137, 431, 535, 559, 641, 693, 824
Kzo9I	GATC	4 cut(s)	39, 85, 118, 835
LmnI	GCTCC	4 cut(s)	535, 607, 761, 866
Lsp1109I	GCAGC	2 cut(s)	40, 550
LweI	GCATC	2 cut(s)	280, 309
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	4 cut(s)	41, 87, 120, 837
MboI	GATC	4 cut(s)	39, 85, 118, 835
MboII	GAAGA	6 cut(s)	486, 489, 492, 529, 717, 746
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	3 cut(s)	171, 235, 796
MlyI	GAGTC	1 cut(s)	635
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	3 cut(s)	17, 570, 804
MslI	CAYNNNNRTG	2 cut(s)	636, 688
MspA1I	CMGCKG	1 cut(s)	31
MspR9I	CCNGG	2 cut(s)	423, 702
Mva1269I	GAATGC	2 cut(s)	343, 653
MvaI	CCWGG	2 cut(s)	423, 702
MwoI	GCNNNNNNNGC	1 cut(s)	670
NdeII	GATC	4 cut(s)	39, 85, 118, 835
NlaIII	CATG	7 cut(s)	137, 431, 535, 559, 641, 693, 824
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	1 cut(s)	693
NspI	RCATGY	2 cut(s)	137, 431
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	358
PciI	ACATGT	1 cut(s)	427
PctI	GAATGC	2 cut(s)	343, 653
PdmI	GAANNNNTTC	1 cut(s)	738
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	30, 540
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	64
PscI	ACATGT	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	2 cut(s)	421, 700
PspEI	GGTNACC	1 cut(s)	693
PspGI	CCWGG	2 cut(s)	421, 700
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	2 cut(s)	636, 688
SaqAI	TTAA	3 cut(s)	17, 570, 804
SatI	GCNGC	2 cut(s)	29, 539
Sau3AI	GATC	4 cut(s)	39, 85, 118, 835
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	2 cut(s)	423, 702
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	280, 309
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	636, 688
Sse9I	AATT	3 cut(s)	171, 235, 796
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	1 cut(s)	546
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	421, 700
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	171, 235, 796
Tru1I	TTAA	3 cut(s)	17, 570, 804
Tru9I	TTAA	3 cut(s)	17, 570, 804
TseFI	GTSAC	1 cut(s)	693
TseI	GCWGC	2 cut(s)	28, 538
Tsp45I	GTSAC	1 cut(s)	693
TspDTI	ATGAA	4 cut(s)	66, 321, 530, 837
TspGWI	ACGGA	2 cut(s)	794, 805
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	796
XceI	RCATGY	2 cut(s)	137, 431
XmiI	GTMKAC	2 cut(s)	189, 509
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.