Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003720.1

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

51540 .. 52168

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003720.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgcaggatgttcaagagaatgctcaacagaggcagaggcctataaggaggagaaagagaaaaacacctgcctctcccaagaacataatgtctactatgaagattggtaaactcatggagcagccagctagtgttttcatgggtcgtttatttaaacttggaagtggagaaacatattatccagctcctctcttagagctattcaaggaaaaacatacccatgactcaccttctggtcagtatcatgcattcaccttgccacctctgcctccagaaccatcatcatggtcaccacctggaagacaaacttatcaagacctggtgacgtatttaagccaatacggctacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

117

Amino Acids

13.52

Weight (kDa)

9.82

Isoelectric Point (pI)

74.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	14, 205
AjnI	CCWGG	2 cut(s)	295, 318
AluBI	AGCT	3 cut(s)	128, 185, 199
AluI	AGCT	3 cut(s)	128, 185, 199
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	121
AsuHPI	GGTGA	4 cut(s)	219, 244, 282, 334
BbsI	GAAGAC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	2 cut(s)	297, 320
BfaI	CTAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	76
BglI	GCCNNNNNGGC	1 cut(s)	342
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	297, 320
BmrFI	CCNGG	2 cut(s)	297, 320
BpiI	GAAGAC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	297, 320
BseGI	GGATG	1 cut(s)	13
BseRI	GAGGAG	2 cut(s)	64, 177
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	40
BsmI	GAATGC	2 cut(s)	25, 248
BsnI	GGCC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	297, 320
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	193
BstEII	GGTNACC	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 342
BstNI	CCWGG	2 cut(s)	297, 320
BstPI	GGTNACC	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	295, 318
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	126
CsiI	ACCWGGT	1 cut(s)	318
CviAII	CATG	5 cut(s)	115, 139, 221, 245, 285
CviJI	RGCY	7 cut(s)	40, 124, 128, 185, 199, 336, 345
CviKI_1	RGCY	7 cut(s)	40, 124, 128, 185, 199, 336, 345
DdeI	CTNAG	1 cut(s)	193
DraI	TTTAAA	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	288
EcoO65I	GGTNACC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	295, 318
EcoT22I	ATGCAT	1 cut(s)	250
FaeI	CATG	5 cut(s)	118, 142, 224, 248, 288
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FatI	CATG	5 cut(s)	114, 138, 220, 244, 284
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	40
Hin1II	CATG	5 cut(s)	118, 142, 224, 248, 288
HinfI	GANTC	1 cut(s)	224
HphI	GGTGA	4 cut(s)	219, 244, 282, 334
Hpy166II	GTNNAC	2 cut(s)	93, 110
Hpy188III	TCNNGA	3 cut(s)	14, 272, 314
Hpy8I	GTNNAC	2 cut(s)	93, 110
HpyAV	CCTTC	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	4, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 342
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	5 cut(s)	118, 142, 224, 248, 288
LmnI	GCTCC	2 cut(s)	118, 190
LpnPI	CCDG	9 cut(s)	81, 138, 195, 219, 282, 285, 305, 309, 332
Lsp1109I	GCAGC	1 cut(s)	133
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	2 cut(s)	288, 322
MboII	GAAGA	2 cut(s)	112, 312
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	7 cut(s)	24, 30, 42, 82, 198, 273, 279
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	2 cut(s)	153, 332
MslI	CAYNNNNRTG	2 cut(s)	219, 283
MspR9I	CCNGG	2 cut(s)	297, 320
Mva1269I	GAATGC	2 cut(s)	25, 248
MvaI	CCWGG	2 cut(s)	297, 320
MwoI	GCNNNNNNNGC	2 cut(s)	265, 342
NlaIII	CATG	5 cut(s)	118, 142, 224, 248, 288
NmuCI	GTSAC	2 cut(s)	288, 322
NsiI	ATGCAT	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	40
PctI	GAATGC	2 cut(s)	25, 248
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	295, 318
PspEI	GGTNACC	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	295, 318
RseI	CAYNNNNRTG	2 cut(s)	219, 283
SaqAI	TTAA	2 cut(s)	153, 332
SatI	GCNGC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	297, 320
SexAI	ACCWGGT	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	219, 283
SseBI	AGGCCT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	295, 318
TaiI	ACGT	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	153, 332
Tru9I	TTAA	2 cut(s)	153, 332
TseFI	GTSAC	2 cut(s)	288, 322
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	2 cut(s)	288, 322
TspDTI	ATGAA	2 cut(s)	113, 127
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.