Rmu_co8276489.1_g000001

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8276489.1
Physical Location & Seq
Reverse (-)
1 .. 729
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8276489.1_g000001.1.cds

Sequence Viewer

Length: 320 bp
atggctgactcatttttgcttacaggagatgaaagaagatccgtcctgagctcctcatctgggaagggagttgtcaaaaacagttcagaagtcaattcaggacggaaaaggcgttattcatctaaagatagcaacgatggacttgaaccagtgtcggaggataatggatatgatcaccctgatccaaacttcaaggtatcaaggttatctggaaatggcccaacacctgagcaagaactattgatggaaactggaccgacacagacacaacaaccaatcatcaatcagccactggaaaaagtgactgatgcaattcgaat

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

5.1

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 33, 176
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 2 cut(s) 146, 193
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 2 cut(s) 33, 176
AlwNI CAGNNNCTG 1 cut(s) 292
AoxI GGCC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 218, 254
AsuHPI GGTGA 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 53
BccI CCATC 2 cut(s) 131, 238
BclI TGATCA 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 218, 254
BmsI GCATC 1 cut(s) 298
Bpu10I CCTNAGC 2 cut(s) 47, 228
Bpu14I TTCGAA 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 3 cut(s) 149, 256, 297
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 38, 219
BseNI ACTGG 3 cut(s) 149, 256, 297
BseRI GAGGAG 1 cut(s) 43
BshFI GGCC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 60
BsnI GGCC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 38, 172, 181
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 2 cut(s) 39, 220
BspPI GGATC 2 cut(s) 33, 176
BspT104I TTCGAA 1 cut(s) 316
BsrI ACTGG 3 cut(s) 149, 256, 297
BssMI GATC 3 cut(s) 38, 172, 181
Bst4CI ACNGT 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 47, 228
BstKTI GATC 3 cut(s) 41, 175, 184
BstMBI GATC 3 cut(s) 38, 172, 181
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 156, 290
CaiI CAGNNNCTG 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 218, 254
CviJI RGCY 4 cut(s) 5, 51, 219, 289
CviKI_1 RGCY 4 cut(s) 5, 51, 219, 289
DdeI CTNAG 2 cut(s) 47, 228
DpnI GATC 3 cut(s) 40, 174, 183
DpnII GATC 3 cut(s) 38, 172, 181
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 53
FaiI YATR 1 cut(s) 171
FbaI TGATCA 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 219
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 88, 157
Hpy188III TCNNGA 3 cut(s) 46, 99, 210
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 47, 228
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 3 cut(s) 38, 172, 181
LmnI GCTCC 1 cut(s) 56
LweI GCATC 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 40, 174, 183
MboI GATC 3 cut(s) 38, 172, 181
MboII GAAGA 1 cut(s) 48
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 2 cut(s) 94, 312
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 2 cut(s) 64, 151
NdeII GATC 3 cut(s) 38, 172, 181
NmuCI GTSAC 1 cut(s) 301
NspV TTCGAA 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp124BI GAGCTC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 218, 254
PstNI CAGNNNCTG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 38
SacI GAGCTC 1 cut(s) 53
Sau3AI GATC 3 cut(s) 38, 172, 181
Sau96I GGNCC 2 cut(s) 218, 254
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 53, 198, 206, 229
SfaNI GCATC 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 316
SinI GGWCC 1 cut(s) 254
Sse9I AATT 2 cut(s) 94, 312
SstI GAGCTC 1 cut(s) 53
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 316
TaqII GACCGA 1 cut(s) 271
TasI AATT 2 cut(s) 94, 312
TscAI CASTG 2 cut(s) 156, 297
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 45, 108
TspGWI ACGGA 2 cut(s) 31, 118
TspRI CASTG 2 cut(s) 156, 297
VpaK11BI GGWCC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.