Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

57027197 .. 57029135

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGATCCAGGGTTCGGCCTCACCGTACAAATCAAACTCAGGAAGTACCAAGGACGGTGTCGCCGAGTTAGGATTGTTCTTGAGGTGGAGGAAAGAAGCAATAACTCTGCCTGAGGCTGAGCATCAAGATACAGATCTTGTTGGTGACATCGAGCAGTCTCTTGATTTCTCTCACCATGCCACGCTTTTCCACCAGCAAACCGGCTATTTTCTCATGCAACTGGATAGTGTAGATGTGGGAGAACCACTTAACGATAATGCAGCGGAGGGAGATCAACATCAGAACTTACATCAAGACCAGCATCAGGAAGGACAGCAGGCTAATAATGTGTTTGATGAAGTGGTGCAGATGCAGGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACCTGCCTCTGTAATGGATAATGACCAAACAATCCATCCTGGACATGTGTACCAATCTTGGCTTCAAGATACTTCAGATATAGTTTCAAGAAGAAGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTCGTTTATTTAAACTTGGAAGTGGAGAAACATATTATCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCTGCATTCACCTTGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATCAAGACCTGGTGACGTATTTAAGCCAATACAGCTACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

262

Amino Acids

29.92

Weight (kDa)

5.86

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	539
AciI	CCGC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	3 cut(s)	26, 46, 464
AfiI	CCNNNNNNNGG	2 cut(s)	13, 304
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	4 cut(s)	362, 479, 501, 652
AjnI	CCWGG	4 cut(s)	6, 451, 730, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AluBI	AGCT	4 cut(s)	575, 632, 646, 780
AluI	AGCT	4 cut(s)	575, 632, 646, 780
Alw26I	GTCTC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	15, 386
ApeKI	GCWGC	2 cut(s)	260, 568
AsuHPI	GGTGA	7 cut(s)	12, 155, 164, 666, 679, 717, 769
AxyI	CCTNAGG	1 cut(s)	111
BaeI	ACNNNNGTAYC	2 cut(s)	446, 479
BbsI	GAAGAC	1 cut(s)	742
BbvI	GCAGC	2 cut(s)	272, 580
BccI	CCATC	2 cut(s)	456, 721
BciT130I	CCWGG	4 cut(s)	8, 453, 732, 755
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	2 cut(s)	261, 569
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	2 cut(s)	262, 570
Bme1390I	CCNGG	4 cut(s)	8, 453, 732, 755
BmrFI	CCNGG	4 cut(s)	8, 453, 732, 755
BmsI	GCATC	3 cut(s)	130, 310, 339
BpiI	GAAGAC	1 cut(s)	742
BpmI	CTGGAG	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	100
BsaBI	GATNNNNATC	2 cut(s)	132, 276
BsaJI	CCNNGG	2 cut(s)	7, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 304
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	225
Bse21I	CCTNAGG	1 cut(s)	111
Bse8I	GATNNNNATC	2 cut(s)	132, 276
BseBI	CCWGG	4 cut(s)	8, 453, 732, 755
BseDI	CCNNGG	2 cut(s)	7, 48
BseGI	GGATG	2 cut(s)	361, 448
BseJI	GATNNNNATC	2 cut(s)	132, 276
BseLI	CCNNNNNNNGG	2 cut(s)	13, 304
BseMII	CTCAG	3 cut(s)	51, 102, 108
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	412, 624
BseXI	GCAGC	2 cut(s)	272, 580
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	17, 388
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	13, 304
BsmAI	GTCTC	1 cut(s)	162
BsmI	GAATGC	2 cut(s)	373, 683
BsnI	GGCC	2 cut(s)	17, 388
Bsp143I	GATC	3 cut(s)	3, 133, 271
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	17, 388
BspCNI	CTCAG	3 cut(s)	50, 103, 109
BspMI	ACCTGC	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	7, 48
BssMI	GATC	3 cut(s)	3, 133, 271
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	4 cut(s)	8, 453, 732, 755
Bst4CI	ACNGT	2 cut(s)	24, 56
BstC8I	GCNNGC	2 cut(s)	318, 573
BstDEI	CTNAG	4 cut(s)	37, 111, 117, 640
BstEII	GGTNACC	1 cut(s)	723
BstF5I	GGATG	2 cut(s)	361, 448
BstKTI	GATC	3 cut(s)	6, 136, 274
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	3 cut(s)	3, 133, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	700, 777
BstNI	CCWGG	4 cut(s)	8, 453, 732, 755
BstNSI	RCATGY	1 cut(s)	461
BstPI	GGTNACC	1 cut(s)	723
BstSCI	CCNGG	4 cut(s)	6, 451, 730, 753
BstV1I	GCAGC	2 cut(s)	272, 580
BstV2I	GAAGAC	1 cut(s)	742
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	17, 388
BtsCI	GGATG	2 cut(s)	361, 448
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	318, 573
Cfr10I	RCCGGY	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	753
Csp6I	GTAC	3 cut(s)	25, 45, 463
CviAII	CATG	7 cut(s)	176, 214, 458, 562, 586, 668, 720
CviQI	GTAC	3 cut(s)	25, 45, 463
DdeI	CTNAG	4 cut(s)	37, 111, 117, 640
DpnI	GATC	3 cut(s)	5, 135, 273
DpnII	GATC	3 cut(s)	3, 133, 271
DraI	TTTAAA	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	471
Eco81I	CCTNAGG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	723
EcoO65I	GGTNACC	1 cut(s)	723
EcoRII	CCWGG	4 cut(s)	6, 451, 730, 753
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	7 cut(s)	179, 217, 461, 565, 589, 671, 723
FalI	AAGNNNNNCTT	2 cut(s)	727, 759
FatI	CATG	7 cut(s)	175, 213, 457, 561, 585, 667, 719
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	2 cut(s)	261, 569
FokI	GGATG	2 cut(s)	368, 435
Fsp4HI	GCNGC	2 cut(s)	261, 569
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	2 cut(s)	261, 569
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	17, 388
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	7 cut(s)	179, 217, 461, 565, 589, 671, 723
HinfI	GANTC	1 cut(s)	671
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	7 cut(s)	12, 155, 164, 666, 679, 717, 769
Hpy166II	GTNNAC	3 cut(s)	463, 540, 557
Hpy188I	TCNGA	2 cut(s)	282, 490
Hpy8I	GTNNAC	3 cut(s)	463, 540, 557
HpyAV	CCTTC	2 cut(s)	302, 687
HpyCH4III	ACNGT	2 cut(s)	24, 56
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	5 cut(s)	217, 260, 346, 352, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	700, 777
HpyF3I	CTNAG	4 cut(s)	37, 111, 117, 640
HpySE526I	ACGT	1 cut(s)	761
Hsp92II	CATG	7 cut(s)	179, 217, 461, 565, 589, 671, 723
Kzo9I	GATC	3 cut(s)	3, 133, 271
LmnI	GCTCC	2 cut(s)	565, 637
Lsp1109I	GCAGC	2 cut(s)	272, 580
LweI	GCATC	3 cut(s)	130, 310, 339
MabI	ACCWGGT	1 cut(s)	753
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	3 cut(s)	143, 723, 757
MalI	GATC	3 cut(s)	5, 135, 273
MboI	GATC	3 cut(s)	3, 133, 271
MboII	GAAGA	5 cut(s)	516, 519, 522, 559, 747
MflI	RGATCY	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	665
MseI	TTAA	3 cut(s)	249, 600, 767
MslI	CAYNNNNRTG	2 cut(s)	666, 718
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	4 cut(s)	8, 453, 732, 755
Mva1269I	GAATGC	2 cut(s)	373, 683
MvaI	CCWGG	4 cut(s)	8, 453, 732, 755
MwoI	GCNNNNNNNGC	2 cut(s)	700, 777
NdeII	GATC	3 cut(s)	3, 133, 271
NlaIII	CATG	7 cut(s)	179, 217, 461, 565, 589, 671, 723
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	3 cut(s)	143, 723, 757
NspI	RCATGY	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	388
PciI	ACATGT	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 60
PctI	GAATGC	2 cut(s)	373, 683
PflFI	GACNNNGTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	2 cut(s)	262, 570
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
PscI	ACATGT	1 cut(s)	457
Psp6I	CCWGG	4 cut(s)	6, 451, 730, 753
PspEI	GGTNACC	1 cut(s)	723
PspGI	CCWGG	4 cut(s)	6, 451, 730, 753
PsuI	RGATCY	1 cut(s)	133
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	3 cut(s)	26, 46, 464
RsaNI	GTAC	3 cut(s)	25, 45, 463
RseI	CAYNNNNRTG	2 cut(s)	666, 718
SaqAI	TTAA	3 cut(s)	249, 600, 767
SatI	GCNGC	2 cut(s)	261, 569
Sau3AI	GATC	3 cut(s)	3, 133, 271
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	4 cut(s)	8, 453, 732, 755
SexAI	ACCWGGT	1 cut(s)	753
SfaNI	GCATC	3 cut(s)	130, 310, 339
SmiMI	CAYNNNNRTG	2 cut(s)	666, 718
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	4 cut(s)	6, 451, 730, 753
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	24, 56
TaiI	ACGT	1 cut(s)	764
TaqI	TCGA	1 cut(s)	150
Tru1I	TTAA	3 cut(s)	249, 600, 767
Tru9I	TTAA	3 cut(s)	249, 600, 767
TseFI	GTSAC	3 cut(s)	143, 723, 757
TseI	GCWGC	2 cut(s)	260, 568
Tsp45I	GTSAC	3 cut(s)	143, 723, 757
TspDTI	ATGAA	2 cut(s)	351, 560
Tth111I	GACNNNGTC	1 cut(s)	56
XceI	RCATGY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.