Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

62083705 .. 62087050

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG453000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCAGCGGAGGGCCGGAGATCAACATCAGAACTTACATCAAGCTGATCCTGAGGATATCACATTGCCTAAATGTTATGATCCATCAGATGCACGTGCAGATTTGTTCAACCCTCGCTTTGAGAGATTTGAAATTGAGGGAGATGACGTAGACCTCACATCAGGAGAGCCCACACATATTCGACCACCTTCTCCAAATTATCTAATACCTTCTCCACCTCGTCAAGACCAGCATCAGGAAGGACAGCAGGCTAATAATGTGTTTGATGAAGTGCTGCAGATGCAGGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACCTGCCTCTGTAATGGATAATGACCAAACAATCCATCCTGCTCATGTGTACCAATCTTGGCTTCAAGATACTTCAGATATAGTTTCAAGAAGACGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTCGTTTATTTAAACTTGGAAGTGGAGAAACATATTATCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCTGCATTCACCTTGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATCAAGACCCTGGTTTTGTTTGCAGCATTCACCTTGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATCAAGAACCTGCCTGTTGAAGATTTTCTTAGTGGAGGTGGCTCCCACGGAACAGATACGGACAAATTTAGTTAAGAATGACCAACGACATGAAGTGCTGGATGATGCCAATCTTATTGGCAAGAGAGGAGCTGATGCCAACCTGGCAACACCAAGGAATTCCGGAGATGAAAGAAGATCCGTCCTGAGCTCCTCATCTGGGAAGGGAGTTGACAAAAACAGTTCAGAAGTCAATTCAGGACGGTTAGCAAATTTTTTTATCCGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

344

Amino Acids

38.99

Weight (kDa)

8.69

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	2 cut(s)	355, 782
AccI	GTMKAC	2 cut(s)	150, 470
AccIII	TCCGGA	1 cut(s)	926
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	3 cut(s)	41, 74, 936
AcsI	RAATTY	3 cut(s)	829, 922, 1015
AcuI	CTGAAG	1 cut(s)	402
AcvI	CACGTG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	235, 963
AgsI	TTSAA	7 cut(s)	109, 131, 293, 410, 432, 583, 784
AjnI	CCWGG	4 cut(s)	661, 685, 749, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	390, 422
AluBI	AGCT	6 cut(s)	44, 506, 563, 577, 896, 954
AluI	AGCT	6 cut(s)	44, 506, 563, 577, 896, 954
Alw21I	GWGCWC	1 cut(s)	956
AlwI	GGATC	3 cut(s)	41, 74, 936
Aor13HI	TCCGGA	1 cut(s)	926
AoxI	GGCC	2 cut(s)	12, 317
ApeKI	GCWGC	4 cut(s)	4, 274, 499, 699
ApoI	RAATTY	3 cut(s)	829, 922, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp700I	GAANNNNTTC	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	5 cut(s)	597, 610, 648, 698, 736
AxyI	CCTNAGG	1 cut(s)	51
BanII	GRGCYC	2 cut(s)	171, 956
BbrPI	CACGTG	1 cut(s)	95
BbsI	GAAGAC	3 cut(s)	442, 673, 761
Bbv12I	GWGCWC	1 cut(s)	956
BbvI	GCAGC	4 cut(s)	16, 261, 511, 711
BccI	CCATC	4 cut(s)	91, 387, 652, 740
BciT130I	CCWGG	4 cut(s)	663, 687, 751, 908
BfaI	CTAG	2 cut(s)	507, 1033
BfmI	CTRYAG	1 cut(s)	275
BfuAI	ACCTGC	2 cut(s)	355, 782
BglI	GCCNNNNNGGC	1 cut(s)	908
BisI	GCNGC	4 cut(s)	5, 275, 500, 700
BlsI	GCNGC	4 cut(s)	6, 276, 501, 701
Bme1390I	CCNGG	4 cut(s)	663, 687, 751, 908
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	4 cut(s)	663, 687, 751, 908
BmsI	GCATC	5 cut(s)	79, 241, 270, 859, 889
BpiI	GAAGAC	3 cut(s)	442, 673, 761
BpmI	CTGGAG	2 cut(s)	621, 709
Bpu10I	CCTNAGC	1 cut(s)	950
BsaAI	YACGTR	1 cut(s)	95
BsaBI	GATNNNNATC	2 cut(s)	24, 873
BsaJI	CCNNGG	3 cut(s)	685, 810, 917
BsaWI	WCCGGW	1 cut(s)	926
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 963
Bse21I	CCTNAGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	62
Bse8I	GATNNNNATC	2 cut(s)	24, 873
BseAI	TCCGGA	1 cut(s)	926
BseBI	CCWGG	4 cut(s)	663, 687, 751, 908
BseDI	CCNNGG	3 cut(s)	685, 810, 917
BseGI	GGATG	3 cut(s)	292, 379, 871
BseJI	GATNNNNATC	2 cut(s)	24, 873
BseLI	CCNNNNNNNGG	2 cut(s)	235, 963
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	2 cut(s)	42, 941
BseRI	GAGGAG	4 cut(s)	343, 555, 906, 946
BseXI	GCAGC	4 cut(s)	16, 261, 511, 711
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	14, 319
BsiHKAI	GWGCWC	1 cut(s)	956
BsiSI	CCGG	2 cut(s)	15, 927
BslI	CCNNNNNNNGG	2 cut(s)	235, 963
BsmI	GAATGC	3 cut(s)	304, 614, 702
BsnI	GGCC	2 cut(s)	14, 319
Bsp1286I	GDGCHC	2 cut(s)	171, 956
Bsp13I	TCCGGA	1 cut(s)	926
Bsp143I	GATC	4 cut(s)	19, 46, 79, 941
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	2 cut(s)	14, 319
BspCNI	CTCAG	2 cut(s)	43, 942
BspEI	TCCGGA	1 cut(s)	926
BspLI	GGNNCC	1 cut(s)	807
BspMAI	CTGCAG	1 cut(s)	279
BspMI	ACCTGC	2 cut(s)	355, 782
BspPI	GGATC	3 cut(s)	41, 74, 936
BsrDI	GCAATG	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	685, 810, 917
BssMI	GATC	4 cut(s)	19, 46, 79, 941
BssT1I	CCWWGG	1 cut(s)	917
Bst2UI	CCWGG	4 cut(s)	663, 687, 751, 908
Bst4CI	ACNGT	2 cut(s)	986, 1008
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	249, 504
BstDEI	CTNAG	4 cut(s)	51, 571, 793, 950
BstDSI	CCRYGG	1 cut(s)	810
BstEII	GGTNACC	2 cut(s)	654, 742
BstF5I	GGATG	3 cut(s)	292, 379, 871
BstKTI	GATC	4 cut(s)	22, 49, 82, 944
BstMBI	GATC	4 cut(s)	19, 46, 79, 941
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 631, 719, 908
BstNI	CCWGG	4 cut(s)	663, 687, 751, 908
BstPI	GGTNACC	2 cut(s)	654, 742
BstSCI	CCNGG	4 cut(s)	661, 685, 749, 906
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	16, 261, 511, 711
BstV2I	GAAGAC	3 cut(s)	442, 673, 761
BstX2I	RGATCY	1 cut(s)	941
BstXI	CCANNNNNNTGG	2 cut(s)	651, 739
BstYI	RGATCY	1 cut(s)	941
Bsu36I	CCTNAGG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	14, 319
BtgI	CCRYGG	1 cut(s)	810
BtsCI	GGATG	3 cut(s)	292, 379, 871
BveI	ACCTGC	2 cut(s)	355, 782
Cac8I	GCNNGC	2 cut(s)	249, 504
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	7 cut(s)	389, 493, 517, 599, 651, 739, 854
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	4 cut(s)	51, 571, 793, 950
DpnI	GATC	4 cut(s)	21, 48, 81, 943
DpnII	GATC	4 cut(s)	19, 46, 79, 941
DraI	TTTAAA	1 cut(s)	532
Ecl136II	GAGCTC	1 cut(s)	954
Eco130I	CCWWGG	1 cut(s)	917
Eco147I	AGGCCT	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	171, 956
Eco32I	GATATC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	954
Eco57I	CTGAAG	1 cut(s)	402
Eco72I	CACGTG	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	51
Eco91I	GGTNACC	2 cut(s)	654, 742
EcoICRI	GAGCTC	1 cut(s)	954
EcoO65I	GGTNACC	2 cut(s)	654, 742
EcoRI	GAATTC	1 cut(s)	922
EcoRII	CCWGG	4 cut(s)	661, 685, 749, 906
EcoRV	GATATC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	917
EcoT38I	GRGCYC	2 cut(s)	171, 956
ErhI	CCWWGG	1 cut(s)	917
FaeI	CATG	7 cut(s)	392, 496, 520, 602, 654, 742, 857
FalI	AAGNNNNNCTT	6 cut(s)	658, 690, 746, 778, 776, 808
FatI	CATG	7 cut(s)	388, 492, 516, 598, 650, 738, 853
FblI	GTMKAC	2 cut(s)	150, 470
Fnu4HI	GCNGC	4 cut(s)	5, 275, 500, 700
FokI	GGATG	3 cut(s)	299, 366, 878
FriOI	GRGCYC	2 cut(s)	171, 956
Fsp4HI	GCNGC	4 cut(s)	5, 275, 500, 700
FspBI	CTAG	2 cut(s)	507, 1033
GluI	GCNGC	4 cut(s)	5, 275, 500, 700
GsuI	CTGGAG	2 cut(s)	621, 709
HaeIII	GGCC	2 cut(s)	14, 319
HapII	CCGG	2 cut(s)	15, 927
Hin1II	CATG	7 cut(s)	392, 496, 520, 602, 654, 742, 857
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HinfI	GANTC	2 cut(s)	602, 1029
HpaII	CCGG	2 cut(s)	15, 927
HphI	GGTGA	5 cut(s)	597, 610, 648, 698, 736
Hpy166II	GTNNAC	5 cut(s)	151, 394, 471, 488, 976
Hpy188I	TCNGA	5 cut(s)	30, 88, 421, 991, 1028
Hpy8I	GTNNAC	5 cut(s)	151, 394, 471, 488, 976
HpyAV	CCTTC	5 cut(s)	198, 219, 233, 618, 961
HpyCH4III	ACNGT	2 cut(s)	986, 1008
HpyCH4IV	ACGT	2 cut(s)	94, 147
HpyCH4V	TGCA	7 cut(s)	4, 92, 98, 277, 283, 614, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 631, 719, 908
HpyF3I	CTNAG	4 cut(s)	51, 571, 793, 950
HpySE526I	ACGT	2 cut(s)	94, 147
Hsp92II	CATG	7 cut(s)	392, 496, 520, 602, 654, 742, 857
Kpn2I	TCCGGA	1 cut(s)	926
Kzo9I	GATC	4 cut(s)	19, 46, 79, 941
LmnI	GCTCC	5 cut(s)	496, 568, 811, 893, 959
Lsp1109I	GCAGC	4 cut(s)	16, 261, 511, 711
LweI	GCATC	5 cut(s)	79, 241, 270, 859, 889
MaeI	CTAG	2 cut(s)	507, 1033
MaeII	ACGT	2 cut(s)	94, 147
MaeIII	GTNAC	2 cut(s)	654, 742
MalI	GATC	4 cut(s)	21, 48, 81, 943
MboI	GATC	4 cut(s)	19, 46, 79, 941
MboII	GAAGA	7 cut(s)	447, 453, 490, 678, 766, 796, 951
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	2 cut(s)	171, 956
MluCI	AATT	6 cut(s)	132, 196, 829, 922, 997, 1015
MlyI	GAGTC	1 cut(s)	596
MroI	TCCGGA	1 cut(s)	926
MroXI	GAANNNNTTC	1 cut(s)	788
MseI	TTAA	2 cut(s)	531, 837
MslI	CAYNNNNRTG	3 cut(s)	597, 649, 737
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	2 cut(s)	15, 927
MspR9I	CCNGG	4 cut(s)	663, 687, 751, 908
Mva1269I	GAATGC	3 cut(s)	304, 614, 702
MvaI	CCWGG	4 cut(s)	663, 687, 751, 908
MwoI	GCNNNNNNNGC	4 cut(s)	280, 631, 719, 908
NdeII	GATC	4 cut(s)	19, 46, 79, 941
NlaIII	CATG	7 cut(s)	392, 496, 520, 602, 654, 742, 857
NlaIV	GGNNCC	1 cut(s)	807
NmuCI	GTSAC	2 cut(s)	654, 742
PaqCI	CACCTGC	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	319
PctI	GAATGC	3 cut(s)	304, 614, 702
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	1 cut(s)	1029
PkrI	GCNGC	4 cut(s)	6, 276, 501, 701
PleI	GAGTC	1 cut(s)	596
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	596
Ppu21I	YACGTR	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	956
Psp6I	CCWGG	4 cut(s)	661, 685, 749, 906
PspCI	CACGTG	1 cut(s)	95
PspEI	GGTNACC	2 cut(s)	654, 742
PspGI	CCWGG	4 cut(s)	661, 685, 749, 906
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	941
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	3 cut(s)	597, 649, 737
SacI	GAGCTC	1 cut(s)	956
SaqAI	TTAA	2 cut(s)	531, 837
SatI	GCNGC	4 cut(s)	5, 275, 500, 700
Sau3AI	GATC	4 cut(s)	19, 46, 79, 941
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	4 cut(s)	663, 687, 751, 908
SduI	GDGCHC	2 cut(s)	171, 956
SfaNI	GCATC	5 cut(s)	79, 241, 270, 859, 889
SfcI	CTRYAG	1 cut(s)	275
SmiMI	CAYNNNNRTG	3 cut(s)	597, 649, 737
Sse9I	AATT	6 cut(s)	132, 196, 829, 922, 997, 1015
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	507, 1033
SstI	GAGCTC	1 cut(s)	956
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	4 cut(s)	661, 685, 749, 906
StyI	CCWWGG	1 cut(s)	917
TaaI	ACNGT	2 cut(s)	986, 1008
TaiI	ACGT	2 cut(s)	97, 150
TaqI	TCGA	1 cut(s)	181
TasI	AATT	6 cut(s)	132, 196, 829, 922, 997, 1015
TfiI	GAWTC	1 cut(s)	1029
Tru1I	TTAA	2 cut(s)	531, 837
Tru9I	TTAA	2 cut(s)	531, 837
TseFI	GTSAC	2 cut(s)	654, 742
TseI	GCWGC	4 cut(s)	4, 274, 499, 699
Tsp45I	GTSAC	2 cut(s)	654, 742
TspDTI	ATGAA	4 cut(s)	282, 491, 870, 948
TspGWI	ACGGA	3 cut(s)	827, 838, 934
XapI	RAATTY	3 cut(s)	829, 922, 1015
XmiI	GTMKAC	2 cut(s)	150, 470
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	2 cut(s)	507, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.