Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

17509153 .. 17513477

Gene Structure 4325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGTTCTACTCTCACAGCCTCCTTGCTCGGAAAGAGCCGCTCGGCCAAATCTGGATGGCCGCCACCATGCACGCCAAGATGAACCGCAGGAATCTCTACCAGATCGACCTCATCAGAATCTGCGAAGAGATTCTGAATCCAAGAGCTCCTATGGCTCTCCGACTCTCCAGTATTCTCATGGGTGGAGTCGTCATCGTCTACGAACGTAAAGTGAAGCTCCTATTCGATGATGTGCGCCGTCTTTTGGATGAATTAAACGAAGCATGGAAGAAGGTGAAATCCAACACAGACTCCACTGTCCTACCCAAACGGAGAGCTCAGGCCAAGAAAGAAGCAATAACTCTGCCTGAGGCTGAGCATCAAGATACAGATCTTGTTGGTGACATCGAGCAGTCTCTTGATTTCTCTCACCATGCCACGCTTTTCCACCAGCAAACCGGCTATTTTCTCATGCAACTGGATAGTGTAGATGTGGGAGAACCACTTAACGATAATGCAGCGGAGGGAGATCAACCTCAGAACTTACATCAAGCTGATCCTGAGGATATCACATTGCCTAAATGTTATCATCCATCAGATGCACATGCAGATTTGTTCAACCCTCGCTTTGAGAGATTTGAAATTGAGGGATATGACGTAGACCTCACATCAGGAGAGCCCACACATATTCGACCACCTTCTCCAAATTATCTAATACCTTCTCCACCTCGTCAAGACCAGCATCAGGAAGGACAGCAGACTAATAATGTGTTTGATGAAGTGGTGCAGATGCAGGATGTTCAAGAGAATGCTCAACCGAGGCAGAGGCCTATAAGGAGTAGAAAGAGAAAAACACCTGCCTCTGTAATGGATAATGACCAAACAATCCATCCTGGACATGTGTACCAATCTTGGCTTCAAGATACTTCAGATATAGTTTCAAGAAGAAGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTTTCATGGGTCGTTTATTTAAACTTGGAAGTGGAGAAACATATTATCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCTGCATTCACCTTGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATCAAGACCTGCTTGTTGAAGATTTTCTTAGTGGAGGTGGCTCCCAGTCATTTGCAACTCCCACGGAACAGATACGGACAAATTTAGTTAAGAATAACCAACGACATGAAGTGCTGGATGATCTGCGAGCCAATCTTATTGGCAAGAGAGGAGTTGATGCCAACCTGGCAACACCAAGGAATTCCGGAGATGAAAGAAGATCCGTCCTGAGCTCCTCATCTGGGAAGGGAGTTGACAAAAACAGTTCAGAAGTCAATTCAGGACGGAAAAGGCGTTATTCATCTAAAGATAGCAACGATGGACTTGAACCAGTGTCGGAGGATAATGGATATGATCACCCTGATCCAAACTTCAAGGTATCAAGGTTATCTGGAAATGGCCCAACACCTGAGCAAGAACTATTGATGGAAACTGGACCGACACAGACACAACAACCAATCATCAATCAGCTACTGGAAAAAGTGACTGATGCAATTCGAATGGAACTGAAATCCCATTTTGAAATACCGGGTGGCCCTCAAGTAGAATCCCTGAACTACCTGACTGCTGGAATGAATCGAAGAGGAGCGGCTTTGCTTTTCTATCAAACTTGTGTTCTTGCTACTCGTGATTTCGTAAAAGTTAAACAAAATGCCCCTTACGAGGATATTCTCATGACTAGAGGACCAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

613

Amino Acids

69.36

Weight (kDa)

6.17

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 100	3.5e-31	N terminus of Rad21 / Rec8 like protein
Rad21_Rec8	PF04824	561 - 613	6.6e-19	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	844
AasI	GACNNNNNNGTC	1 cut(s)	296
Acc36I	ACCTGC	2 cut(s)	844, 1182
AccBSI	CCGCTC	2 cut(s)	40, 1733
AccI	GTMKAC	3 cut(s)	198, 639, 959
AccIII	TCCGGA	1 cut(s)	1349
AciI	CCGC	5 cut(s)	38, 60, 85, 500, 1733
AclWI	GGATC	3 cut(s)	530, 1359, 1502
AcoI	YGGCCR	2 cut(s)	43, 57
AcsI	RAATTY	2 cut(s)	1246, 1345
AcuI	CTGAAG	1 cut(s)	891
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	4 cut(s)	244, 724, 1386, 1807
AflIII	ACRYGT	1 cut(s)	877
AjnI	CCWGG	3 cut(s)	871, 1150, 1329
AjuI	GAANNNNNNNTTGG	2 cut(s)	879, 911
AluBI	AGCT	9 cut(s)	146, 217, 317, 533, 995, 1052, 1066, 1377, 1615
AluI	AGCT	9 cut(s)	146, 217, 317, 533, 995, 1052, 1066, 1377, 1615
Alw21I	GWGCWC	3 cut(s)	148, 319, 1379
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	3 cut(s)	530, 1359, 1502
AlwNI	CAGNNNCTG	2 cut(s)	120, 1618
Aor13HI	TCCGGA	1 cut(s)	1349
AoxI	GGCC	6 cut(s)	43, 57, 321, 806, 1543, 1678
ApeKI	GCWGC	2 cut(s)	497, 988
ApoI	RAATTY	2 cut(s)	1246, 1345
Asp700I	GAANNNNTTC	2 cut(s)	129, 1188
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	4 cut(s)	1544, 1580, 1679, 1829
AsuC2I	CCSGG	1 cut(s)	1674
AsuHPI	GGTGA	7 cut(s)	286, 392, 401, 1086, 1099, 1137, 1493
AsuII	TTCGAA	1 cut(s)	1642
AvaII	GGWCC	2 cut(s)	1580, 1829
AxyI	CCTNAGG	2 cut(s)	348, 540
BaeI	ACNNNNGTAYC	2 cut(s)	866, 899
BanII	GRGCYC	4 cut(s)	148, 319, 660, 1379
BauI	CACGAG	1 cut(s)	1770
BbsI	GAAGAC	1 cut(s)	1162
Bbv12I	GWGCWC	3 cut(s)	148, 319, 1379
BbvI	GCAGC	2 cut(s)	509, 1000
BccI	CCATC	6 cut(s)	49, 580, 876, 1141, 1457, 1564
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	3 cut(s)	873, 1152, 1331
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	1 cut(s)	1674
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	2 cut(s)	996, 1824
BfuAI	ACCTGC	2 cut(s)	844, 1182
BglI	GCCNNNNNGGC	1 cut(s)	1331
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	5 cut(s)	38, 60, 498, 989, 1734
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	5 cut(s)	39, 61, 499, 990, 1735
Bme1390I	CCNGG	4 cut(s)	873, 1152, 1331, 1674
Bme18I	GGWCC	2 cut(s)	1580, 1829
BmgT120I	GGNCC	4 cut(s)	1544, 1580, 1679, 1829
BmiI	GGNNCC	1 cut(s)	1207
BmrFI	CCNGG	4 cut(s)	873, 1152, 1331, 1674
BmrI	ACTGGG	1 cut(s)	1204
BmsI	GCATC	6 cut(s)	367, 568, 730, 759, 1312, 1624
BmuI	ACTGGG	1 cut(s)	1204
BpiI	GAAGAC	1 cut(s)	1162
BpmI	CTGGAG	2 cut(s)	151, 1110
Bpu10I	CCTNAGC	3 cut(s)	318, 1373, 1554
Bpu1102I	GCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	1642
BpuEI	CTTGAG	1 cut(s)	1668
BpuMI	CCSGG	1 cut(s)	1674
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	797, 1227, 1340
BsaWI	WCCGGW	1 cut(s)	1349
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 724, 1386, 1807
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	6 cut(s)	168, 462, 1210, 1475, 1582, 1623
Bse21I	CCTNAGG	2 cut(s)	348, 540
Bse3DI	GCAATG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	1349
BseBI	CCWGG	3 cut(s)	873, 1152, 1331
BseDI	CCNNGG	3 cut(s)	797, 1227, 1340
BseGI	GGATG	6 cut(s)	60, 253, 568, 781, 868, 1288
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	244, 724, 1386, 1807
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	7 cut(s)	332, 339, 345, 530, 531, 1364, 1545
BseNI	ACTGG	6 cut(s)	168, 462, 1210, 1475, 1582, 1623
BseRI	GAGGAG	4 cut(s)	1044, 1329, 1369, 1743
BseXI	GCAGC	2 cut(s)	509, 1000
BsgI	GTGCAG	1 cut(s)	785
BshFI	GGCC	6 cut(s)	45, 59, 323, 808, 1545, 1680
BsiHKAI	GWGCWC	3 cut(s)	148, 319, 1379
BsiSI	CCGG	3 cut(s)	438, 1350, 1673
BslI	CCNNNNNNNGG	4 cut(s)	244, 724, 1386, 1807
BsmAI	GTCTC	1 cut(s)	399
BsmI	GAATGC	2 cut(s)	793, 1103
BsnI	GGCC	6 cut(s)	45, 59, 323, 808, 1545, 1680
Bsp119I	TTCGAA	1 cut(s)	1642
Bsp1286I	GDGCHC	4 cut(s)	148, 319, 660, 1379
Bsp13I	TCCGGA	1 cut(s)	1349
Bsp143I	GATC	8 cut(s)	102, 370, 508, 535, 1285, 1364, 1498, 1507
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	5 cut(s)	38, 60, 85, 500, 1733
BspANI	GGCC	6 cut(s)	45, 59, 323, 808, 1545, 1680
BspCNI	CTCAG	7 cut(s)	331, 340, 346, 529, 532, 1365, 1546
BspEI	TCCGGA	1 cut(s)	1349
BspHI	TCATGA	1 cut(s)	1818
BspLI	GGNNCC	1 cut(s)	1207
BspMI	ACCTGC	2 cut(s)	844, 1182
BspPI	GGATC	3 cut(s)	530, 1359, 1502
BspT104I	TTCGAA	1 cut(s)	1642
BsrBI	CCGCTC	2 cut(s)	40, 1733
BsrDI	GCAATG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	6 cut(s)	168, 462, 1210, 1475, 1582, 1623
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	3 cut(s)	797, 1227, 1340
BssMI	GATC	8 cut(s)	102, 370, 508, 535, 1285, 1364, 1498, 1507
BssSI	CACGAG	1 cut(s)	1770
BssT1I	CCWWGG	1 cut(s)	1340
Bst2BI	CACGAG	1 cut(s)	1770
Bst2UI	CCWGG	3 cut(s)	873, 1152, 1331
Bst4CI	ACNGT	2 cut(s)	298, 1409
Bst6I	CTCTTC	2 cut(s)	120, 1720
BstBI	TTCGAA	1 cut(s)	1642
BstC8I	GCNNGC	3 cut(s)	72, 993, 1293
BstDEI	CTNAG	9 cut(s)	318, 348, 354, 516, 540, 1060, 1193, 1373, 1554
BstDSI	CCRYGG	1 cut(s)	1227
BstEII	GGTNACC	1 cut(s)	1143
BstF5I	GGATG	6 cut(s)	60, 253, 568, 781, 868, 1288
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	8 cut(s)	105, 373, 511, 538, 1288, 1367, 1501, 1510
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	8 cut(s)	102, 370, 508, 535, 1285, 1364, 1498, 1507
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 1120, 1331
BstNI	CCWGG	3 cut(s)	873, 1152, 1331
BstNSI	RCATGY	2 cut(s)	587, 881
BstPI	GGTNACC	1 cut(s)	1143
BstSCI	CCNGG	4 cut(s)	871, 1150, 1329, 1672
BstV1I	GCAGC	2 cut(s)	509, 1000
BstV2I	GAAGAC	1 cut(s)	1162
BstX2I	RGATCY	2 cut(s)	370, 1364
BstXI	CCANNNNNNTGG	1 cut(s)	1140
BstYI	RGATCY	2 cut(s)	370, 1364
Bsu36I	CCTNAGG	2 cut(s)	348, 540
BsuRI	GGCC	6 cut(s)	45, 59, 323, 808, 1545, 1680
BtgI	CCRYGG	1 cut(s)	1227
BtsCI	GGATG	6 cut(s)	60, 253, 568, 781, 868, 1288
BtsIMutI	CAGTG	2 cut(s)	294, 1482
BveI	ACCTGC	2 cut(s)	844, 1182
Cac8I	GCNNGC	3 cut(s)	72, 993, 1293
CaiI	CAGNNNCTG	2 cut(s)	120, 1618
CciI	TCATGA	1 cut(s)	1818
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	4 cut(s)	1544, 1580, 1679, 1829
Csp6I	GTAC	1 cut(s)	883
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	9 cut(s)	318, 348, 354, 516, 540, 1060, 1193, 1373, 1554
DpnI	GATC	8 cut(s)	104, 372, 510, 537, 1287, 1366, 1500, 1509
DpnII	GATC	8 cut(s)	102, 370, 508, 535, 1285, 1364, 1498, 1507
DraI	TTTAAA	1 cut(s)	1021
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	2 cut(s)	43, 57
Eam1104I	CTCTTC	2 cut(s)	120, 1720
EarI	CTCTTC	2 cut(s)	120, 1720
Ecl136II	GAGCTC	3 cut(s)	146, 317, 1377
Eco130I	CCWWGG	1 cut(s)	1340
Eco147I	AGGCCT	1 cut(s)	808
Eco24I	GRGCYC	4 cut(s)	148, 319, 660, 1379
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	1580, 1829
Eco53kI	GAGCTC	3 cut(s)	146, 317, 1377
Eco57I	CTGAAG	1 cut(s)	891
Eco81I	CCTNAGG	2 cut(s)	348, 540
Eco91I	GGTNACC	1 cut(s)	1143
EcoICRI	GAGCTC	3 cut(s)	146, 317, 1377
EcoO65I	GGTNACC	1 cut(s)	1143
EcoRI	GAATTC	1 cut(s)	1345
EcoRII	CCWGG	3 cut(s)	871, 1150, 1329
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	1340
EcoT38I	GRGCYC	4 cut(s)	148, 319, 660, 1379
ErhI	CCWWGG	1 cut(s)	1340
FalI	AAGNNNNNCTT	6 cut(s)	1147, 1179, 1161, 1193, 1176, 1208
FbaI	TGATCA	1 cut(s)	1498
FblI	GTMKAC	3 cut(s)	198, 639, 959
Fnu4HI	GCNGC	5 cut(s)	38, 60, 498, 989, 1734
FokI	GGATG	6 cut(s)	67, 260, 555, 788, 855, 1295
FriOI	GRGCYC	4 cut(s)	148, 319, 660, 1379
Fsp4HI	GCNGC	5 cut(s)	38, 60, 498, 989, 1734
FspBI	CTAG	2 cut(s)	996, 1824
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	5 cut(s)	38, 60, 498, 989, 1734
GsuI	CTGGAG	2 cut(s)	151, 1110
HaeIII	GGCC	6 cut(s)	45, 59, 323, 808, 1545, 1680
HapII	CCGG	3 cut(s)	438, 1350, 1673
HhaI	GCGC	1 cut(s)	237
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	1399
HindII	GTYRAC	1 cut(s)	1399
HpaII	CCGG	3 cut(s)	438, 1350, 1673
HphI	GGTGA	7 cut(s)	286, 392, 401, 1086, 1099, 1137, 1493
Hpy166II	GTNNAC	6 cut(s)	199, 640, 883, 960, 977, 1399
Hpy188I	TCNGA	9 cut(s)	30, 116, 135, 161, 519, 577, 910, 1414, 1483
Hpy8I	GTNNAC	6 cut(s)	199, 640, 883, 960, 977, 1399
HpyAV	CCTTC	6 cut(s)	265, 687, 708, 722, 1107, 1384
HpyCH4III	ACNGT	2 cut(s)	298, 1409
HpyCH4IV	ACGT	2 cut(s)	205, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 1120, 1331
HpyF3I	CTNAG	9 cut(s)	318, 348, 354, 516, 540, 1060, 1193, 1373, 1554
HpySE526I	ACGT	2 cut(s)	205, 636
HspAI	GCGC	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	1349
Ksp22I	TGATCA	1 cut(s)	1498
Kzo9I	GATC	8 cut(s)	102, 370, 508, 535, 1285, 1364, 1498, 1507
LmnI	GCTCC	7 cut(s)	151, 222, 985, 1057, 1211, 1382, 1730
Lsp1109I	GCAGC	2 cut(s)	509, 1000
LweI	GCATC	6 cut(s)	367, 568, 730, 759, 1312, 1624
MaeI	CTAG	2 cut(s)	996, 1824
MaeII	ACGT	2 cut(s)	205, 636
MaeIII	GTNAC	3 cut(s)	380, 1143, 1627
MalI	GATC	8 cut(s)	104, 372, 510, 537, 1287, 1366, 1500, 1509
MbiI	CCGCTC	2 cut(s)	40, 1733
MboI	GATC	8 cut(s)	102, 370, 508, 535, 1285, 1364, 1498, 1507
MflI	RGATCY	2 cut(s)	370, 1364
MhlI	GDGCHC	4 cut(s)	148, 319, 660, 1379
MluCI	AATT	7 cut(s)	251, 621, 685, 1246, 1345, 1420, 1638
MlyI	GAGTC	4 cut(s)	156, 195, 284, 1085
MmeI	TCCRAC	3 cut(s)	184, 306, 1461
MroI	TCCGGA	1 cut(s)	1349
MroXI	GAANNNNTTC	2 cut(s)	129, 1188
MseI	TTAA	5 cut(s)	254, 486, 1020, 1254, 1788
MslI	CAYNNNNRTG	2 cut(s)	1086, 1138
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	3 cut(s)	438, 1350, 1673
MspR9I	CCNGG	4 cut(s)	873, 1152, 1331, 1674
Mva1269I	GAATGC	2 cut(s)	793, 1103
MvaI	CCWGG	3 cut(s)	873, 1152, 1331
MwoI	GCNNNNNNNGC	3 cut(s)	152, 1120, 1331
NciI	CCSGG	1 cut(s)	1674
NdeII	GATC	8 cut(s)	102, 370, 508, 535, 1285, 1364, 1498, 1507
NlaIV	GGNNCC	1 cut(s)	1207
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	3 cut(s)	380, 1143, 1627
NspI	RCATGY	2 cut(s)	587, 881
NspV	TTCGAA	1 cut(s)	1642
PagI	TCATGA	1 cut(s)	1818
PaqCI	CACCTGC	1 cut(s)	844
PceI	AGGCCT	1 cut(s)	808
PciI	ACATGT	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	1 cut(s)	1435
PctI	GAATGC	2 cut(s)	793, 1103
PdmI	GAANNNNTTC	2 cut(s)	129, 1188
PfeI	GAWTC	6 cut(s)	91, 117, 130, 136, 1691, 1720
PfoI	TCCNGGA	1 cut(s)	871
PkrI	GCNGC	5 cut(s)	39, 61, 499, 990, 1735
PleI	GAGTC	4 cut(s)	156, 194, 284, 1085
PpsI	GAGTC	4 cut(s)	156, 194, 284, 1085
PscI	ACATGT	1 cut(s)	877
Psp124BI	GAGCTC	3 cut(s)	148, 319, 1379
Psp6I	CCWGG	3 cut(s)	871, 1150, 1329
PspEI	GGTNACC	1 cut(s)	1143
PspGI	CCWGG	3 cut(s)	871, 1150, 1329
PspN4I	GGNNCC	1 cut(s)	1207
PspPI	GGNCC	4 cut(s)	1544, 1580, 1679, 1829
PstNI	CAGNNNCTG	2 cut(s)	120, 1618
PsuI	RGATCY	2 cut(s)	370, 1364
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
RseI	CAYNNNNRTG	2 cut(s)	1086, 1138
SacI	GAGCTC	3 cut(s)	148, 319, 1379
SaqAI	TTAA	5 cut(s)	254, 486, 1020, 1254, 1788
SatI	GCNGC	5 cut(s)	38, 60, 498, 989, 1734
Sau3AI	GATC	8 cut(s)	102, 370, 508, 535, 1285, 1364, 1498, 1507
Sau96I	GGNCC	4 cut(s)	1544, 1580, 1679, 1829
SchI	GAGTC	4 cut(s)	156, 195, 284, 1085
ScrFI	CCNGG	4 cut(s)	873, 1152, 1331, 1674
SduI	GDGCHC	4 cut(s)	148, 319, 660, 1379
SfaNI	GCATC	6 cut(s)	367, 568, 730, 759, 1312, 1624
SfuI	TTCGAA	1 cut(s)	1642
SinI	GGWCC	2 cut(s)	1580, 1829
SmiMI	CAYNNNNRTG	2 cut(s)	1086, 1138
SmlI	CTYRAG	1 cut(s)	1683
SmoI	CTYRAG	1 cut(s)	1683
Sse9I	AATT	7 cut(s)	251, 621, 685, 1246, 1345, 1420, 1638
SseBI	AGGCCT	1 cut(s)	808
SsiI	CCGC	5 cut(s)	38, 60, 85, 500, 1733
SspMI	CTAG	2 cut(s)	996, 1824
SstI	GAGCTC	3 cut(s)	148, 319, 1379
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	4 cut(s)	871, 1150, 1329, 1672
StyI	CCWWGG	1 cut(s)	1340
TaaI	ACNGT	2 cut(s)	298, 1409
TaiI	ACGT	2 cut(s)	208, 639
TaqI	TCGA	6 cut(s)	105, 225, 387, 670, 1642, 1723
TaqII	GACCGA	1 cut(s)	1597
TasI	AATT	7 cut(s)	251, 621, 685, 1246, 1345, 1420, 1638
TauI	GCSGC	3 cut(s)	40, 62, 1736
TfiI	GAWTC	6 cut(s)	91, 117, 130, 136, 1691, 1720
Tru1I	TTAA	5 cut(s)	254, 486, 1020, 1254, 1788
Tru9I	TTAA	5 cut(s)	254, 486, 1020, 1254, 1788
TscAI	CASTG	2 cut(s)	301, 1482
TseFI	GTSAC	3 cut(s)	380, 1143, 1627
TseI	GCWGC	2 cut(s)	497, 988
Tsp45I	GTSAC	3 cut(s)	380, 1143, 1627
TspDTI	ATGAA	9 cut(s)	95, 264, 771, 980, 994, 1287, 1371, 1434, 1733
TspGWI	ACGGA	5 cut(s)	325, 1244, 1255, 1357, 1444
TspRI	CASTG	2 cut(s)	301, 1482
VpaK11BI	GGWCC	2 cut(s)	1580, 1829
XapI	RAATTY	2 cut(s)	1246, 1345
XceI	RCATGY	2 cut(s)	587, 881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	3 cut(s)	198, 639, 959
XmnI	GAANNNNTTC	2 cut(s)	129, 1188
XspI	CTAG	2 cut(s)	996, 1824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.