RCHIOBHM_CHR0C11G0499361

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGTTCTACTCTCACAGCCTCCTTGCTCGGAAAGAGCCGCTCGGCCAAATCTGGATGGCCGCCACCATGCACGCCAAGATGAACCGCAGGAATCTCAACCAGATCGACCTCATCAGAATCTGCGAAGAGATTCTGAATCCAAGAGCTCCTATGGCTCTCCGACTCTCCAGTATTCTCATGGGTGGAGTCGTCATCGTCTACGAACGTAAAGTGAAGCTCCTATTTGGTACCCTTCCCCTTCTTCTCCTTCTTCTTTTTTTGTTGCTGAAATTTTTACAAAATCAACCTTGTGTTCCAACGATTTCTGACGTTTATTTTCAATTTCCACACAGATGA

Protein Analysis

111

Amino Acids

12.89

Weight (kDa)

10.02

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 198
AciI CCGC 3 cut(s) 38, 60, 85
AcoI YGGCCR 2 cut(s) 43, 57
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 1 cut(s) 320
AluBI AGCT 2 cut(s) 146, 217
AluI AGCT 2 cut(s) 146, 217
Alw21I GWGCWC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 2 cut(s) 43, 57
ApoI RAATTY 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 1 cut(s) 49
BisI GCNGC 2 cut(s) 38, 60
BlsI GCNGC 2 cut(s) 39, 61
BmiI GGNNCC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 168
BshFI GGCC 2 cut(s) 45, 59
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 148
BsnI GGCC 2 cut(s) 45, 59
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 3 cut(s) 38, 60, 85
BspANI GGCC 2 cut(s) 45, 59
BspLI GGNNCC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 168
BssMI GATC 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 72
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 45, 59
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 228
CviAII CATG 2 cut(s) 67, 178
CviJI RGCY 7 cut(s) 18, 37, 45, 59, 146, 155, 217
CviKI_1 RGCY 7 cut(s) 18, 37, 45, 59, 146, 155, 217
CviQI GTAC 1 cut(s) 228
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
EaeI YGGCCR 2 cut(s) 43, 57
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 2 cut(s) 70, 181
FaiI YATR 3 cut(s) 68, 152, 179
FatI CATG 2 cut(s) 66, 177
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 38, 60
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 38, 60
GluI GCNGC 2 cut(s) 38, 60
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 2 cut(s) 45, 59
Hin1II CATG 2 cut(s) 70, 181
HinfI GANTC 6 cut(s) 91, 117, 130, 136, 162, 186
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 5 cut(s) 30, 116, 135, 161, 307
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 242, 248, 257
HpyCH4IV ACGT 2 cut(s) 205, 309
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 205, 309
Hsp92II CATG 2 cut(s) 70, 181
KpnI GGTACC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 151, 222
LpnPI CCDG 4 cut(s) 37, 73, 113, 181
MaeII ACGT 2 cut(s) 205, 309
MalI GATC 1 cut(s) 104
MbiI CCGCTC 1 cut(s) 40
MboI GATC 1 cut(s) 102
MboII GAAGA 3 cut(s) 137, 233, 242
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 269, 320
MlyI GAGTC 2 cut(s) 156, 195
MmeI TCCRAC 2 cut(s) 184, 320
MnlI CCTC 2 cut(s) 29, 119
MroXI GAANNNNTTC 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 102
NlaIII CATG 2 cut(s) 70, 181
NlaIV GGNNCC 1 cut(s) 229
NmeAIII GCCGAG 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 4 cut(s) 91, 117, 130, 136
PkrI GCNGC 2 cut(s) 39, 61
PleI GAGTC 2 cut(s) 156, 194
PpsI GAGTC 2 cut(s) 156, 194
Psp124BI GAGCTC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 120
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 331
SacI GAGCTC 1 cut(s) 148
SatI GCNGC 2 cut(s) 38, 60
Sau3AI GATC 1 cut(s) 102
SchI GAGTC 2 cut(s) 156, 195
SduI GDGCHC 1 cut(s) 148
SetI ASST 6 cut(s) 111, 148, 208, 219, 289, 312
SmiMI CAYNNNNRTG 1 cut(s) 331
Sse9I AATT 2 cut(s) 269, 320
SsiI CCGC 3 cut(s) 38, 60, 85
SstI GAGCTC 1 cut(s) 148
TaiI ACGT 2 cut(s) 208, 312
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 269, 320
TauI GCSGC 2 cut(s) 40, 62
TfiI GAWTC 4 cut(s) 91, 117, 130, 136
TspDTI ATGAA 1 cut(s) 95
XapI RAATTY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.