RchiOBHm_Chr7g0231181

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
54757552 .. 54761246
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20716

Sequence Viewer

Length: 396 bp
ATGCAACTGGATAGTGTAGATGTGGGAGAACCACTTAACGATAATGCAGCGGAGGGAGATCAACATCAGAACTTACATCAAGCTGATCCTGAGGATATCACATTGCCTAAATGTTATGATCCATCAGATGCACATGCAGATTTGTTCAACCCTCGCTTTGAGAGATTTGAAATTGAGGGAGATAACGTAGACCTCACATCAGGAGAGCCCACACATATTCGACCACCTTCTCCAAATTATCTAATACCTTCTCCACCTCGTCAAGACCAGCATCAGGAAGGACAGCAGGCTAATAATGTGTTTGCTGAAGTGGTGCAGATGCAGGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACTGCCTCTGTAA

Protein Analysis

131

Amino Acids

15.0

Weight (kDa)

4.78

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 50
AclWI GGATC 2 cut(s) 80, 113
AcuI CTGAAG 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 3 cut(s) 148, 170, 332
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwI GGATC 2 cut(s) 80, 113
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 90
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 130
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmsI GCATC 3 cut(s) 118, 280, 309
BsaBI GATNNNNATC 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 12
Bse21I CCTNAGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 63
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 335
BshFI GGCC 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 274
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 58, 85, 118
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 82
BspPI GGATC 2 cut(s) 80, 113
BsrDI GCAATG 1 cut(s) 101
BsrI ACTGG 1 cut(s) 12
BssMI GATC 3 cut(s) 58, 85, 118
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 3 cut(s) 61, 88, 121
BstMBI GATC 3 cut(s) 58, 85, 118
BstNSI RCATGY 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 288
CviAII CATG 1 cut(s) 134
CviJI RGCY 4 cut(s) 83, 208, 290, 358
CviKI_1 RGCY 4 cut(s) 83, 208, 290, 358
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 60, 87, 120
DpnII GATC 3 cut(s) 58, 85, 118
Eco147I AGGCCT 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 1 cut(s) 137
FaiI YATR 4 cut(s) 117, 135, 216, 362
FatI CATG 1 cut(s) 133
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 358
Hin1II CATG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 69, 127
Hpy188III TCNNGA 5 cut(s) 89, 201, 263, 275, 332
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 237, 258, 272
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 6 cut(s) 4, 47, 131, 137, 316, 322
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 3 cut(s) 58, 85, 118
LpnPI CCDG 6 cut(s) 102, 186, 260, 272, 281, 308
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 3 cut(s) 118, 280, 309
MaeII ACGT 1 cut(s) 186
MalI GATC 3 cut(s) 60, 87, 120
MboI GATC 3 cut(s) 58, 85, 118
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 2 cut(s) 171, 235
MnlI CCTC 9 cut(s) 46, 85, 162, 169, 203, 267, 342, 348, 360
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 343
NdeII GATC 3 cut(s) 58, 85, 118
NlaIII CATG 1 cut(s) 137
NspI RCATGY 1 cut(s) 137
PceI AGGCCT 1 cut(s) 358
PctI GAATGC 1 cut(s) 343
PkrI GCNGC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 3 cut(s) 58, 85, 118
SduI GDGCHC 1 cut(s) 210
SetI ASST 6 cut(s) 85, 189, 195, 229, 250, 259
SfaNI GCATC 3 cut(s) 118, 280, 309
Sse9I AATT 2 cut(s) 171, 235
SseBI AGGCCT 1 cut(s) 358
SsiI CCGC 1 cut(s) 50
StuI AGGCCT 1 cut(s) 358
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 220
TasI AATT 2 cut(s) 171, 235
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 390
TseI GCWGC 1 cut(s) 47
TspRI CASTG 1 cut(s) 390
XceI RCATGY 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.