Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

10231179 .. 10238322

Gene Structure 7144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGGATCTCAGACTCTCCATTACTATTCTCATGGGTGGAGTTGTCATCGTCTACGAACGTATGGTGAAGCTCTTATTCGATGATGTGCACCGTCTTCTGTATCAATTAAACGAAGCATGGAAGAAGGTGAAGACCAACGCCGACTCCACTGTCCTCCTCAAACGGAGATTTCAGGCCCAGAAAGAAGCAATAACTCTGCCTGAGGCTGAGCATGAAGATACAGACATTGACATTGAGCAGTCGCTTGATTTTTCTTACCATGCCACGCTTTTCCAGCAGCAAACCGGCTATCTTCTCATGCAACTGGATAGTGTAGATGTGGGAGAAACAGTTAACGATAATGCAGTGGAGGGAGATGAACATCAGAACTTACAACAAGCTGATCCTGAGGATATCACATTGCCTAGACGTTATGATCCATCAGATGCAAATGAAGATTTGTTCAACCATCGCTACGAGAGATTTGAAATTGAGGGAGATGACTTGGACTTCACATCAGGAGACCCCGCACATAATCGACCGCCTTCTCCAAATTATCTAATACCTTCTCCACCTCGTCAAGACCAGCATCAGGAAGGACAGCAGCCTAATAATGTGTTTAATGAAGTGGTGCAAATGCAGGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCAGAGGCCTACAAGGAGGAGAGAGAGAAAAACACCAGCCTCTGTAATGGATTATAATGACCAAACAATCCATCCTGCTCATGTCTACCAATCTTGGCTTGAAGATACTACAGATATAGCTTCAAGAAGACGAAGAAACCAAAAGCCTAACAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGCGTTCTCATGGGTCGTTTATTTAAACCTGGAAAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCTGCATTAACCTCGCCACCTCTGCCTCCAGAACCATCATTATGGTCACCACCTGGAAGACAAACTTATCAATACCCGCCTGTTGAAGCTTTTTATAGTGGAGGTGGCTCCCGGTCATTTGTAAACCCCATAGAACTGATACGGACAAATTTAGTTAACAATGACGTACCAGTGCAACCTGAAGCCAATCTTAATGCCATGAGAGGAGCTGATACCAACCCGGCAACACCAGGAAATGCTGAGGAAGAAGAAGACGATGACCATAAAGAAGAAGAAGCAGAAAATGAAGAAGAAGGAGAAGAGGCAGAAGAAGAAGAAGAAGAGGAGGAGGTTGAAGATGATGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAGGCAGAAGAAGATGATGAAGAAGAAGAAGGAGAAGAGGCAGAAGAAGATGACGAAGAAGAAGAAGGAGAAGAGGCAGAAGAAGGAGGAGGAGAAGAGGGAGAAGAAGAAGAGGAGGTTGAAGATGATGAAGAAGAGGTTGAAGATGATGAAGAGGAGGGTAATGTGCTGCTTCTTACAAGGTGCACACAATTTGATGAGATAATCGTCATTGCTGAAATAAGGATGGAGGATTTCGATGGAGCAGAAGCCCTCCATCAGAGAGTTAGAGAGCTCTTGAGGGAGTATAGGCAGAGAGCGATTGCACCCCCACAGGACGATGATCATTATCACATCATTTATTGGGATTTCCAAGCCATTGGGTACAGAAGACTTTATTGTCCCCTGTTGACCATGTCTTGGGAGGACTTTGCTCACCGTCTGCATGGGATTACTGCACATGATCTAGCACTACTAGATAGATACCATACAGATGATATAACCAAGTGGATTCCCGTTTATAGAGATACAGAAACAGCTGGTATGATCCGTTTGGATATGATGGAGATCCGGGTCACCACGTTTTGCGAGTCTACTGCAGTAATCGAAGTTGGTCACTTTGCCATCGAGGTGGTTGACCCGGCGTTGACCGCCGCCGTTGACCTCCGGTTGACCCGCCGCTTGTGGCGGCGCGTGGCGCGCGTGACTGATGGTTTGAGTTGGTGGACGATCGTGGATCGTATTGTGAGCGGTTTTGGTGTGTTTTGTGAAAGTGAAGACGCAGCGGGATTAGAGGTCACGGGGGTGACCATGGCATCGTTAGTGAACCACGCTCTTGTACCGAGTTGGTGGTTACTAATAGCATTAAATCGTGAACCACGCTCTCGCGCCGAGTTGGTGGTTGCGATCGCTAGAGCTCTAGTCCGTCCGCCAAATGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

746

Amino Acids

85.85

Weight (kDa)

4.32

Isoelectric Point (pI)

68.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AasI	GACNNNNNNGTC	2 cut(s)	149, 1695
AccB7I	CCANNNNNTGG	1 cut(s)	1716
AccBSI	CCGCTC	1 cut(s)	2046
AccI	GTMKAC	4 cut(s)	51, 738, 815, 1889
AccII	CGCG	4 cut(s)	1989, 1996, 1998, 2184
AclWI	GGATC	6 cut(s)	12, 377, 410, 1837, 1858, 2040
AcsI	RAATTY	1 cut(s)	1069
AcuI	CTGAAG	1 cut(s)	1122
AfaI	GTAC	3 cut(s)	1089, 1682, 2136
AfiI	CCNNNNNNNGG	2 cut(s)	571, 1716
AjnI	CCWGG	3 cut(s)	880, 973, 1150
AleI	CACNNNNGTG	1 cut(s)	2099
Alw21I	GWGCWC	4 cut(s)	90, 1505, 1593, 2215
Alw26I	GTCTC	1 cut(s)	495
Alw44I	GTGCAC	2 cut(s)	86, 1501
AlwI	GGATC	6 cut(s)	12, 377, 410, 1837, 1858, 2040
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	2 cut(s)	174, 659
ApaLI	GTGCAC	2 cut(s)	86, 1501
ApeKI	GCWGC	5 cut(s)	277, 583, 844, 1486, 2078
ApoI	RAATTY	1 cut(s)	1069
ArsI	GACNNNNNNTTYG	2 cut(s)	1993, 2025
AsiSI	GCGATCGC	1 cut(s)	2205
AspLEI	GCGC	4 cut(s)	1989, 1996, 1998, 2186
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	4 cut(s)	1033, 1142, 1868, 1937
AsuHPI	GGTGA	7 cut(s)	76, 139, 909, 960, 1724, 1864, 2113
AsuNHI	GCTAGC	1 cut(s)	851
AxyI	CCTNAGG	2 cut(s)	201, 387
BaeGI	GKGCMC	2 cut(s)	90, 1505
BanII	GRGCYC	2 cut(s)	1593, 2215
BbsI	GAAGAC	7 cut(s)	86, 137, 787, 985, 1179, 1693, 2079
Bbv12I	GWGCWC	4 cut(s)	90, 1505, 1593, 2215
BbvCI	CCTCAGC	1 cut(s)	1161
BbvI	GCAGC	5 cut(s)	289, 595, 856, 1473, 2090
BceAI	ACGGC	1 cut(s)	1937
BcgI	CGANNNNNNTGC	4 cut(s)	915, 949, 1874, 1908
BciT130I	CCWGG	3 cut(s)	882, 975, 1152
BclI	TGATCA	1 cut(s)	1639
BcnI	CCSGG	4 cut(s)	1033, 1142, 1868, 1937
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	6 cut(s)	405, 852, 1763, 1772, 2208, 2216
BfmI	CTRYAG	2 cut(s)	762, 1893
BisI	GCNGC	8 cut(s)	278, 584, 845, 1487, 1950, 1975, 1985, 2079
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	8 cut(s)	279, 585, 846, 1488, 1951, 1976, 1986, 2080
Bme1390I	CCNGG	7 cut(s)	882, 975, 1033, 1142, 1152, 1868, 1937
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	1030
BmrFI	CCNGG	7 cut(s)	882, 975, 1033, 1142, 1152, 1868, 1937
BmsI	GCATC	3 cut(s)	415, 577, 2120
BmtI	GCTAGC	1 cut(s)	855
BpiI	GAAGAC	7 cut(s)	86, 137, 787, 985, 1179, 1693, 2079
BpmI	CTGGAG	1 cut(s)	933
Bpu10I	CCTNAGC	1 cut(s)	1161
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	1615
BpuMI	CCSGG	4 cut(s)	1033, 1142, 1868, 1937
BsaBI	GATNNNNATC	3 cut(s)	360, 1644, 1862
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	2106
BsaWI	WCCGGW	1 cut(s)	1962
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 1716
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	309, 1091
Bse21I	CCTNAGG	2 cut(s)	201, 387
Bse3DI	GCAATG	2 cut(s)	398, 1527
Bse8I	GATNNNNATC	3 cut(s)	360, 1644, 1862
BseBI	CCWGG	3 cut(s)	882, 975, 1152
BseDI	CCNNGG	1 cut(s)	2106
BseGI	GGATG	3 cut(s)	628, 724, 1548
BseJI	GATNNNNATC	3 cut(s)	360, 1644, 1862
BseLI	CCNNNNNNNGG	2 cut(s)	571, 1716
BseMI	GCAATG	2 cut(s)	398, 1527
BseMII	CTCAG	5 cut(s)	22, 192, 198, 378, 1152
BseNI	ACTGG	2 cut(s)	309, 1091
BsePI	GCGCGC	1 cut(s)	1994
BseSI	GKGCMC	2 cut(s)	90, 1505
BseXI	GCAGC	5 cut(s)	289, 595, 856, 1473, 2090
BsgI	GTGCAG	1 cut(s)	1737
Bsh1236I	CGCG	4 cut(s)	1989, 1996, 1998, 2184
Bsh1285I	CGRYCG	3 cut(s)	521, 2028, 2205
BshFI	GGCC	2 cut(s)	176, 661
BsiEI	CGRYCG	3 cut(s)	521, 2028, 2205
BsiHKAI	GWGCWC	4 cut(s)	90, 1505, 1593, 2215
BsiSI	CCGG	6 cut(s)	285, 1033, 1142, 1867, 1937, 1963
BslFI	GGGAC	1 cut(s)	1683
BslI	CCNNNNNNNGG	2 cut(s)	571, 1716
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	1683
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	2 cut(s)	176, 661
Bso31I	GGTCTC	1 cut(s)	495
Bsp1286I	GDGCHC	4 cut(s)	90, 1505, 1593, 2215
Bsp1720I	GCTNAGC	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	2106
BspANI	GGCC	2 cut(s)	176, 661
BspCNI	CTCAG	5 cut(s)	21, 193, 199, 379, 1153
BspFNI	CGCG	4 cut(s)	1989, 1996, 1998, 2184
BspLI	GGNNCC	1 cut(s)	1030
BspMAI	CTGCAG	1 cut(s)	1897
BspOI	GCTAGC	1 cut(s)	855
BspPI	GGATC	6 cut(s)	12, 377, 410, 1837, 1858, 2040
BspTNI	GGTCTC	1 cut(s)	495
BsrBI	CCGCTC	1 cut(s)	2046
BsrDI	GCAATG	2 cut(s)	398, 1527
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	309, 1091
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	2106
BssHII	GCGCGC	1 cut(s)	1994
BssT1I	CCWWGG	1 cut(s)	2106
Bst2UI	CCWGG	3 cut(s)	882, 975, 1152
Bst4CI	ACNGT	4 cut(s)	92, 151, 331, 1736
Bst6I	CTCTTC	9 cut(s)	1215, 1236, 1260, 1347, 1383, 1407, 1422, 1446, 1464
BstC8I	GCNNGC	3 cut(s)	849, 853, 1996
BstDEI	CTNAG	5 cut(s)	8, 201, 207, 387, 1161
BstDSI	CCRYGG	1 cut(s)	2106
BstEII	GGTNACC	3 cut(s)	966, 1870, 2101
BstF5I	GGATG	3 cut(s)	628, 724, 1548
BstFNI	CGCG	4 cut(s)	1989, 1996, 1998, 2184
BstHHI	GCGC	4 cut(s)	1989, 1996, 1998, 2186
BstMAI	GTCTC	1 cut(s)	495
BstMCI	CGRYCG	3 cut(s)	521, 2028, 2205
BstMWI	GCNNNNNNNGC	5 cut(s)	274, 943, 1946, 1993, 1995
BstNI	CCWGG	3 cut(s)	882, 975, 1152
BstPI	GGTNACC	3 cut(s)	966, 1870, 2101
BstSCI	CCNGG	7 cut(s)	880, 973, 1031, 1140, 1150, 1866, 1935
BstSFI	CTRYAG	2 cut(s)	762, 1893
BstSLI	GKGCMC	2 cut(s)	90, 1505
BstUI	CGCG	4 cut(s)	1989, 1996, 1998, 2184
BstV1I	GCAGC	5 cut(s)	289, 595, 856, 1473, 2090
BstV2I	GAAGAC	7 cut(s)	86, 137, 787, 985, 1179, 1693, 2079
BstX2I	RGATCY	2 cut(s)	4, 1863
BstXI	CCANNNNNNTGG	3 cut(s)	963, 1676, 1927
BstYI	RGATCY	2 cut(s)	4, 1863
Bsu36I	CCTNAGG	2 cut(s)	201, 387
BsuRI	GGCC	2 cut(s)	176, 661
BtgI	CCRYGG	1 cut(s)	2106
BtgZI	GCGATG	1 cut(s)	434
BtsCI	GGATG	3 cut(s)	628, 724, 1548
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	147, 351, 1098
Cac8I	GCNNGC	3 cut(s)	849, 853, 1996
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	4 cut(s)	1989, 1996, 1998, 2186
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	2084
Csp6I	GTAC	3 cut(s)	1088, 1681, 2135
CviQI	GTAC	3 cut(s)	1088, 1681, 2135
DdeI	CTNAG	5 cut(s)	8, 201, 207, 387, 1161
DraI	TTTAAA	1 cut(s)	877
DrdI	GACNNNNNNGTC	2 cut(s)	149, 1695
DseDI	GACNNNNNNGTC	2 cut(s)	149, 1695
Eam1104I	CTCTTC	9 cut(s)	1215, 1236, 1260, 1347, 1383, 1407, 1422, 1446, 1464
EarI	CTCTTC	9 cut(s)	1215, 1236, 1260, 1347, 1383, 1407, 1422, 1446, 1464
EciI	GGCGGA	1 cut(s)	2214
Ecl136II	GAGCTC	2 cut(s)	1591, 2213
Eco130I	CCWWGG	1 cut(s)	2106
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	2 cut(s)	1593, 2215
Eco31I	GGTCTC	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	394
Eco53kI	GAGCTC	2 cut(s)	1591, 2213
Eco57I	CTGAAG	1 cut(s)	1122
Eco81I	CCTNAGG	2 cut(s)	201, 387
Eco91I	GGTNACC	3 cut(s)	966, 1870, 2101
EcoICRI	GAGCTC	2 cut(s)	1591, 2213
EcoO65I	GGTNACC	3 cut(s)	966, 1870, 2101
EcoRII	CCWGG	3 cut(s)	880, 973, 1150
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	2106
EcoT38I	GRGCYC	2 cut(s)	1593, 2215
ErhI	CCWWGG	1 cut(s)	2106
FalI	AAGNNNNNCTT	4 cut(s)	970, 1002, 1095, 1127
FaqI	GGGAC	1 cut(s)	1683
FauI	CCCGC	4 cut(s)	514, 1005, 1979, 2074
FbaI	TGATCA	1 cut(s)	1639
FblI	GTMKAC	4 cut(s)	51, 738, 815, 1889
Fnu4HI	GCNGC	8 cut(s)	278, 584, 845, 1487, 1950, 1975, 1985, 2079
FokI	GGATG	3 cut(s)	635, 711, 1555
FriOI	GRGCYC	2 cut(s)	1593, 2215
Fsp4HI	GCNGC	8 cut(s)	278, 584, 845, 1487, 1950, 1975, 1985, 2079
FspBI	CTAG	6 cut(s)	405, 852, 1763, 1772, 2208, 2216
GlaI	GCGC	4 cut(s)	1988, 1995, 1997, 2185
GluI	GCNGC	8 cut(s)	278, 584, 845, 1487, 1950, 1975, 1985, 2079
GsuI	CTGGAG	1 cut(s)	933
HaeIII	GGCC	2 cut(s)	176, 661
HapII	CCGG	6 cut(s)	285, 1033, 1142, 1867, 1937, 1963
HgaI	GACGC	1 cut(s)	2084
HhaI	GCGC	4 cut(s)	1989, 1996, 1998, 2186
Hin6I	GCGC	4 cut(s)	1987, 1994, 1996, 2184
HinP1I	GCGC	4 cut(s)	1987, 1994, 1996, 2184
HincII	GTYRAC	7 cut(s)	334, 1078, 1707, 1933, 1944, 1957, 1968
HindII	GTYRAC	7 cut(s)	334, 1078, 1707, 1933, 1944, 1957, 1968
HindIII	AAGCTT	1 cut(s)	1008
HinfI	GANTC	5 cut(s)	12, 143, 914, 1807, 1886
HpaI	GTTAAC	2 cut(s)	334, 1078
HpaII	CCGG	6 cut(s)	285, 1033, 1142, 1867, 1937, 1963
HphI	GGTGA	7 cut(s)	76, 139, 909, 960, 1724, 1864, 2113
Hpy188I	TCNGA	4 cut(s)	11, 366, 424, 1578
Hpy188III	TCNNGA	9 cut(s)	386, 498, 560, 572, 629, 777, 950, 1594, 2168
HpyCH4III	ACNGT	4 cut(s)	92, 151, 331, 1736
HpyCH4IV	ACGT	4 cut(s)	58, 409, 1086, 1877
HpyF10VI	GCNNNNNNNGC	5 cut(s)	274, 943, 1946, 1993, 1995
HpyF3I	CTNAG	5 cut(s)	8, 201, 207, 387, 1161
HpySE526I	ACGT	4 cut(s)	58, 409, 1086, 1877
HspAI	GCGC	4 cut(s)	1987, 1994, 1996, 2184
Ksp22I	TGATCA	1 cut(s)	1639
KspAI	GTTAAC	2 cut(s)	334, 1078
LmnI	GCTCC	4 cut(s)	841, 1034, 1127, 1559
Lsp1109I	GCAGC	5 cut(s)	289, 595, 856, 1473, 2090
LweI	GCATC	3 cut(s)	415, 577, 2120
MaeI	CTAG	6 cut(s)	405, 852, 1763, 1772, 2208, 2216
MaeII	ACGT	4 cut(s)	58, 409, 1086, 1877
MaeIII	GTNAC	7 cut(s)	966, 1870, 1910, 1999, 2092, 2101, 2148
MbiI	CCGCTC	1 cut(s)	2046
MflI	RGATCY	2 cut(s)	4, 1863
MhlI	GDGCHC	4 cut(s)	90, 1505, 1593, 2215
MluCI	AATT	5 cut(s)	104, 468, 532, 1069, 1508
MlyI	GAGTC	4 cut(s)	6, 137, 908, 1895
MseI	TTAA	8 cut(s)	107, 333, 600, 876, 929, 1077, 1113, 2162
MslI	CAYNNNNRTG	5 cut(s)	909, 961, 1788, 1925, 2099
MspA1I	CMGCKG	2 cut(s)	1835, 2081
MspI	CCGG	6 cut(s)	285, 1033, 1142, 1867, 1937, 1963
MspR9I	CCNGG	7 cut(s)	882, 975, 1033, 1142, 1152, 1868, 1937
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	3 cut(s)	882, 975, 1152
MvnI	CGCG	4 cut(s)	1989, 1996, 1998, 2184
MwoI	GCNNNNNNNGC	5 cut(s)	274, 943, 1946, 1993, 1995
NciI	CCSGG	4 cut(s)	1033, 1142, 1868, 1937
NcoI	CCATGG	1 cut(s)	2106
NheI	GCTAGC	1 cut(s)	851
NlaIV	GGNNCC	1 cut(s)	1030
NmeAIII	GCCGAG	1 cut(s)	2212
NmuCI	GTSAC	6 cut(s)	966, 1870, 1910, 1999, 2092, 2101
OliI	CACNNNNGTG	1 cut(s)	2099
PauI	GCGCGC	1 cut(s)	1994
PceI	AGGCCT	1 cut(s)	661
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	1807
PflFI	GACNNNGTC	1 cut(s)	1711
PflMI	CCANNNNNTGG	1 cut(s)	1716
PkrI	GCNGC	8 cut(s)	279, 585, 846, 1488, 1951, 1976, 1986, 2080
Ple19I	CGATCG	2 cut(s)	2028, 2205
PleI	GAGTC	4 cut(s)	6, 137, 908, 1894
PpsI	GAGTC	4 cut(s)	6, 137, 908, 1894
PsiI	TTATAA	1 cut(s)	708
Psp124BI	GAGCTC	2 cut(s)	1593, 2215
Psp6I	CCWGG	3 cut(s)	880, 973, 1150
PspEI	GGTNACC	3 cut(s)	966, 1870, 2101
PspGI	CCWGG	3 cut(s)	880, 973, 1150
PspN4I	GGNNCC	1 cut(s)	1030
PspPI	GGNCC	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	1897
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	4, 1863
PsyI	GACNNNGTC	1 cut(s)	1711
PteI	GCGCGC	1 cut(s)	1994
PvuI	CGATCG	2 cut(s)	2028, 2205
PvuII	CAGCTG	1 cut(s)	1835
RgaI	GCGATCGC	1 cut(s)	2205
RsaI	GTAC	3 cut(s)	1089, 1682, 2136
RsaNI	GTAC	3 cut(s)	1088, 1681, 2135
RseI	CAYNNNNRTG	5 cut(s)	909, 961, 1788, 1925, 2099
SacI	GAGCTC	2 cut(s)	1593, 2215
SaqAI	TTAA	8 cut(s)	107, 333, 600, 876, 929, 1077, 1113, 2162
SatI	GCNGC	8 cut(s)	278, 584, 845, 1487, 1950, 1975, 1985, 2079
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	4 cut(s)	6, 137, 908, 1895
ScrFI	CCNGG	7 cut(s)	882, 975, 1033, 1142, 1152, 1868, 1937
SduI	GDGCHC	4 cut(s)	90, 1505, 1593, 2215
SfaAI	GCGATCGC	1 cut(s)	2205
SfaNI	GCATC	3 cut(s)	415, 577, 2120
SfcI	CTRYAG	2 cut(s)	762, 1893
SgfI	GCGATCGC	1 cut(s)	2205
SmiMI	CAYNNNNRTG	5 cut(s)	909, 961, 1788, 1925, 2099
SmlI	CTYRAG	1 cut(s)	1594
SmoI	CTYRAG	1 cut(s)	1594
Sse9I	AATT	5 cut(s)	104, 468, 532, 1069, 1508
SseBI	AGGCCT	1 cut(s)	661
SspMI	CTAG	6 cut(s)	405, 852, 1763, 1772, 2208, 2216
SstI	GAGCTC	2 cut(s)	1593, 2215
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	7 cut(s)	880, 973, 1031, 1140, 1150, 1866, 1935
StyI	CCWWGG	1 cut(s)	2106
TaaI	ACNGT	4 cut(s)	92, 151, 331, 1736
TaiI	ACGT	4 cut(s)	61, 412, 1089, 1880
TaqI	TCGA	5 cut(s)	78, 517, 1554, 1902, 1923
TasI	AATT	5 cut(s)	104, 468, 532, 1069, 1508
TauI	GCSGC	3 cut(s)	1952, 1977, 1987
TfiI	GAWTC	1 cut(s)	1807
Tru1I	TTAA	8 cut(s)	107, 333, 600, 876, 929, 1077, 1113, 2162
Tru9I	TTAA	8 cut(s)	107, 333, 600, 876, 929, 1077, 1113, 2162
TscAI	CASTG	3 cut(s)	154, 351, 1098
TseFI	GTSAC	6 cut(s)	966, 1870, 1910, 1999, 2092, 2101
TseI	GCWGC	5 cut(s)	277, 583, 844, 1486, 2078
Tsp45I	GTSAC	6 cut(s)	966, 1870, 1910, 1999, 2092, 2101
TspGWI	ACGGA	4 cut(s)	178, 1078, 1835, 2210
TspRI	CASTG	3 cut(s)	154, 351, 1098
Tth111I	GACNNNGTC	1 cut(s)	1711
Van91I	CCANNNNNTGG	1 cut(s)	1716
VneI	GTGCAC	2 cut(s)	86, 1501
XapI	RAATTY	1 cut(s)	1069
XmiI	GTMKAC	4 cut(s)	51, 738, 815, 1889
XspI	CTAG	6 cut(s)	405, 852, 1763, 1772, 2208, 2216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.