Rh7AG453100

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
62155294 .. 62156037
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG453100.1

Sequence Viewer

Length: 387 bp
ATGCAGCGGAGGGCCGGAGATCAACATCAGAACTTACATCAAGCTGATCCTGAGGATATCACATTGCCTAAATGTTATGATCCATCAGATGCACGTGCAGATTTGTTCAACCCTCGCTTTGAGAGATTTGAAATTGAGGGAGATAACGTAGACCTCACATCAGGAGAGCCCACACATATTCGACCACCTTCTCCAAATTATCTAATACCTTCTCCACCTCGTCAAGACCAGCATCAGGAAGGACAGCAGGCTAATAATGTGTTTGATGAAGTGCTGCAGATGCAGGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACCTGCCTCTTTTATAACTAAAGAAATTGACTTTTATAACTAA

Protein Analysis

128

Amino Acids

15.02

Weight (kDa)

5.53

Isoelectric Point (pI)

74.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 359, 381
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AccI GTMKAC 1 cut(s) 150
AciI CCGC 1 cut(s) 7
AclWI GGATC 2 cut(s) 41, 74
AcvI CACGTG 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 3 cut(s) 109, 131, 293
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
AlwI GGATC 2 cut(s) 41, 74
AoxI GGCC 2 cut(s) 12, 317
ApeKI GCWGC 2 cut(s) 4, 274
AspS9I GGNCC 1 cut(s) 12
AxyI CCTNAGG 1 cut(s) 51
BanII GRGCYC 1 cut(s) 171
BbrPI CACGTG 1 cut(s) 95
BbvI GCAGC 2 cut(s) 16, 261
BccI CCATC 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 2 cut(s) 5, 275
BlsI GCNGC 2 cut(s) 6, 276
BmgT120I GGNCC 1 cut(s) 12
BmsI GCATC 3 cut(s) 79, 241, 270
BsaAI YACGTR 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 24
BseGI GGATG 1 cut(s) 292
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 16, 261
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 2 cut(s) 14, 319
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 235
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 14, 319
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 3 cut(s) 19, 46, 79
BspACI CCGC 1 cut(s) 7
BspANI GGCC 2 cut(s) 14, 319
BspCNI CTCAG 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 2 cut(s) 41, 74
BsrDI GCAATG 1 cut(s) 62
BssMI GATC 3 cut(s) 19, 46, 79
BstBAI YACGTR 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 3 cut(s) 22, 49, 82
BstMBI GATC 3 cut(s) 19, 46, 79
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 16, 261
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 2 cut(s) 14, 319
BtsCI GGATG 1 cut(s) 292
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 12
CviJI RGCY 5 cut(s) 14, 44, 169, 251, 319
CviKI_1 RGCY 5 cut(s) 14, 44, 169, 251, 319
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 21, 48, 81
DpnII GATC 3 cut(s) 19, 46, 79
Eco147I AGGCCT 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 58
Eco72I CACGTG 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 51
EcoRV GATATC 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 171
FaiI YATR 5 cut(s) 78, 177, 323, 359, 381
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 5, 275
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 5, 275
GluI GCNGC 2 cut(s) 5, 275
HaeIII GGCC 2 cut(s) 14, 319
HapII CCGG 1 cut(s) 15
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 30, 88
Hpy188III TCNNGA 5 cut(s) 50, 162, 224, 236, 293
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 198, 219, 233
HpyCH4IV ACGT 2 cut(s) 94, 147
HpyCH4V TGCA 5 cut(s) 4, 92, 98, 277, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 94, 147
Kzo9I GATC 3 cut(s) 19, 46, 79
LpnPI CCDG 8 cut(s) 28, 63, 147, 221, 233, 242, 269, 360
Lsp1109I GCAGC 2 cut(s) 16, 261
LweI GCATC 3 cut(s) 79, 241, 270
MaeII ACGT 2 cut(s) 94, 147
MalI GATC 3 cut(s) 21, 48, 81
MboI GATC 3 cut(s) 19, 46, 79
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 3 cut(s) 132, 196, 369
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 3 cut(s) 19, 46, 79
PaqCI CACCTGC 1 cut(s) 355
PceI AGGCCT 1 cut(s) 319
PctI GAATGC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 6, 276
PmaCI CACGTG 1 cut(s) 95
PmlI CACGTG 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 95
PsiI TTATAA 2 cut(s) 359, 381
PspCI CACGTG 1 cut(s) 95
PspPI GGNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 279
SatI GCNGC 2 cut(s) 5, 275
Sau3AI GATC 3 cut(s) 19, 46, 79
Sau96I GGNCC 1 cut(s) 12
SduI GDGCHC 1 cut(s) 171
SetI ASST 8 cut(s) 46, 97, 150, 156, 190, 211, 220, 349
SfaNI GCATC 3 cut(s) 79, 241, 270
SfcI CTRYAG 1 cut(s) 275
Sse9I AATT 3 cut(s) 132, 196, 369
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 1 cut(s) 7
StuI AGGCCT 1 cut(s) 319
TaiI ACGT 2 cut(s) 97, 150
TaqI TCGA 1 cut(s) 181
TasI AATT 3 cut(s) 132, 196, 369
TseI GCWGC 2 cut(s) 4, 274
TspDTI ATGAA 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.