Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002905.1

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1705

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002905.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

cagctggatagtgtagatgtgggagaaccacttaacgataatgcagcggagggagatcaacctcagaacttacatcaagctgatcctgaggatatcacattgcctaaatgttatcatccatcagatgcacatgcagatttgttcaaccctcgctttgagagatttgaaattgagggatatgacgtagacctcacatcaggagagcccacacatattcgaccaccttctccaaattatctaataccttctccacctcgtcaagaccagcatcaggaaggacagcagactaataatgtgtttgatgaagtggtgcagatgcaggatgttcaagagaatgctcaaccgaggcagaggcctataaggagtagaaagagaaaaacacctgcctctgtaatggataatgaccaaacaatccatcctggacatgtgtaccaatcttggcttcaagatacttcagatatagtttcaagaagaagaagaaaccaaaagcccaagaacataatgtctactatgaagattggtaaactcatggagcagccagctagtgttctcatgggtcgtttatttaaacctggaagtggagaaacatattacccagctcctctcttagagctattcaaggaaaaacatacccatgactcaccttctggtcagtatcatacattcaccttgccacctccgcctccagaaccatcatcatggtcaccacctggaagacaaacttatcaagacctggtgacatatttaagccaatacagctacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

255

Amino Acids

29.2

Weight (kDa)

5.55

Isoelectric Point (pI)

66.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	1 cut(s)	391
AccI	GTMKAC	2 cut(s)	186, 506
AciI	CCGC	2 cut(s)	47, 680
AclWI	GGATC	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	271, 578
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	6 cut(s)	145, 167, 329, 446, 468, 619
AjnI	CCWGG	4 cut(s)	418, 571, 709, 732
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	6 cut(s)	4, 80, 542, 599, 613, 759
AluI	AGCT	6 cut(s)	4, 80, 542, 599, 613, 759
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	44, 535
AsuHPI	GGTGA	4 cut(s)	633, 658, 696, 748
AxyI	CCTNAGG	1 cut(s)	87
BaeI	ACNNNNGTAYC	2 cut(s)	413, 446
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	721
BbvI	GCAGC	2 cut(s)	56, 547
BccI	CCATC	3 cut(s)	127, 423, 700
BciT130I	CCWGG	4 cut(s)	420, 573, 711, 734
BfaI	CTAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	2 cut(s)	45, 536
BlsI	GCNGC	2 cut(s)	46, 537
Bme1390I	CCNGG	4 cut(s)	420, 573, 711, 734
BmrFI	CCNGG	4 cut(s)	420, 573, 711, 734
BmsI	GCATC	3 cut(s)	115, 277, 306
BpiI	GAAGAC	1 cut(s)	721
BpmI	CTGGAG	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 578
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	98
BseBI	CCWGG	4 cut(s)	420, 573, 711, 734
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	3 cut(s)	115, 328, 415
BseLI	CCNNNNNNNGG	2 cut(s)	271, 578
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	77, 78
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	2 cut(s)	56, 547
BseYI	CCCAGC	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	271, 578
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	55, 82
BspACI	CCGC	2 cut(s)	47, 680
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	76, 79
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	2 cut(s)	55, 82
Bst2UI	CCWGG	4 cut(s)	420, 573, 711, 734
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	3 cut(s)	63, 87, 607
BstEII	GGTNACC	1 cut(s)	702
BstF5I	GGATG	3 cut(s)	115, 328, 415
BstKTI	GATC	2 cut(s)	58, 85
BstMBI	GATC	2 cut(s)	55, 82
BstMWI	GCNNNNNNNGC	2 cut(s)	679, 756
BstNI	CCWGG	4 cut(s)	420, 573, 711, 734
BstNSI	RCATGY	2 cut(s)	134, 428
BstPI	GGTNACC	1 cut(s)	702
BstSCI	CCNGG	4 cut(s)	418, 571, 709, 732
BstV1I	GCAGC	2 cut(s)	56, 547
BstV2I	GAAGAC	1 cut(s)	721
BstXI	CCANNNNNNTGG	1 cut(s)	699
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	115, 328, 415
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	540
CsiI	ACCWGGT	1 cut(s)	732
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	6 cut(s)	131, 425, 529, 553, 635, 699
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	63, 87, 607
DpnI	GATC	2 cut(s)	57, 84
DpnII	GATC	2 cut(s)	55, 82
DraI	TTTAAA	1 cut(s)	568
EciI	GGCGGA	1 cut(s)	669
Eco147I	AGGCCT	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	702
EcoO65I	GGTNACC	1 cut(s)	702
EcoRII	CCWGG	4 cut(s)	418, 571, 709, 732
EcoRV	GATATC	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	6 cut(s)	134, 428, 532, 556, 638, 702
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FatI	CATG	6 cut(s)	130, 424, 528, 552, 634, 698
FblI	GTMKAC	2 cut(s)	186, 506
Fnu4HI	GCNGC	2 cut(s)	45, 536
FokI	GGATG	3 cut(s)	102, 335, 402
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	45, 536
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	2 cut(s)	45, 536
GsaI	CCCAGC	1 cut(s)	599
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	355
Hin1II	CATG	6 cut(s)	134, 428, 532, 556, 638, 702
HinfI	GANTC	1 cut(s)	638
HphI	GGTGA	4 cut(s)	633, 658, 696, 748
Hpy166II	GTNNAC	4 cut(s)	187, 430, 507, 524
Hpy188I	TCNGA	3 cut(s)	66, 124, 457
Hpy188III	TCNNGA	9 cut(s)	86, 198, 260, 272, 329, 446, 468, 686, 728
Hpy8I	GTNNAC	4 cut(s)	187, 430, 507, 524
HpyAV	CCTTC	4 cut(s)	234, 255, 269, 654
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	44, 128, 134, 313, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	679, 756
HpyF3I	CTNAG	3 cut(s)	63, 87, 607
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	6 cut(s)	134, 428, 532, 556, 638, 702
Kzo9I	GATC	2 cut(s)	55, 82
LmnI	GCTCC	2 cut(s)	532, 604
Lsp1109I	GCAGC	2 cut(s)	56, 547
LweI	GCATC	3 cut(s)	115, 277, 306
MabI	ACCWGGT	1 cut(s)	732
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	702, 736
MalI	GATC	2 cut(s)	57, 84
MboI	GATC	2 cut(s)	55, 82
MboII	GAAGA	5 cut(s)	483, 486, 489, 526, 726
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	168, 232
MlyI	GAGTC	1 cut(s)	632
MseI	TTAA	3 cut(s)	33, 567, 746
MslI	CAYNNNNRTG	2 cut(s)	633, 697
MspA1I	CMGCKG	2 cut(s)	4, 47
MspR9I	CCNGG	4 cut(s)	420, 573, 711, 734
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	4 cut(s)	420, 573, 711, 734
MwoI	GCNNNNNNNGC	2 cut(s)	679, 756
NdeII	GATC	2 cut(s)	55, 82
NlaIII	CATG	6 cut(s)	134, 428, 532, 556, 638, 702
NmuCI	GTSAC	2 cut(s)	702, 736
NspI	RCATGY	2 cut(s)	134, 428
PaqCI	CACCTGC	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	355
PciI	ACATGT	1 cut(s)	424
PctI	GAATGC	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	46, 537
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
PscI	ACATGT	1 cut(s)	424
Psp6I	CCWGG	4 cut(s)	418, 571, 709, 732
PspEI	GGTNACC	1 cut(s)	702
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	4 cut(s)	418, 571, 709, 732
PvuII	CAGCTG	1 cut(s)	4
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	2 cut(s)	633, 697
SaqAI	TTAA	3 cut(s)	33, 567, 746
SatI	GCNGC	2 cut(s)	45, 536
Sau3AI	GATC	2 cut(s)	55, 82
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	4 cut(s)	420, 573, 711, 734
SduI	GDGCHC	1 cut(s)	207
SexAI	ACCWGGT	1 cut(s)	732
SfaNI	GCATC	3 cut(s)	115, 277, 306
SmiMI	CAYNNNNRTG	2 cut(s)	633, 697
Sse9I	AATT	2 cut(s)	168, 232
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	2 cut(s)	47, 680
SspMI	CTAG	1 cut(s)	543
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	4 cut(s)	418, 571, 709, 732
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	168, 232
Tru1I	TTAA	3 cut(s)	33, 567, 746
Tru9I	TTAA	3 cut(s)	33, 567, 746
TseFI	GTSAC	2 cut(s)	702, 736
TseI	GCWGC	2 cut(s)	44, 535
Tsp45I	GTSAC	2 cut(s)	702, 736
TspDTI	ATGAA	2 cut(s)	318, 527
XceI	RCATGY	2 cut(s)	134, 428
XmiI	GTMKAC	2 cut(s)	186, 506
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.