Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

61234773 .. 61236596

Gene Structure 1824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCAAGATGTTCAAGAGAATGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACCTGCCTCTGTAATGGATAATGACCAAACAATCCATCCTGGACATGTGTACCAATCTTGGGTTCAAGATACTTCAGATATAGTTTCAAGAAGAAGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTTATCTGGAAATGGCCCAACACCTGAGCAAGACACAACAACCAATCATCAATCAGCCACTGGAAAAAGTGACTGATGCAATTCGAATGTATGCTTGTCTCGCACGTCTGCTAGATTGTCTGGTAAATAAGGAACTGAAATCCCATTTTGAAATACCGGGTGGCCCTCAAGTAGAATCCCTGAACGACCTGACTGCTGGAATGAATCGAAGAGGAGCGGCTTTGCTTTTCTATCAAACTTGTGTTCTTGCTACTCGTGATTTTGTAAAAGTTAAACAAAATGCCCCTTACGAGGATATTCTCATGACTAGAGGACCAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

188

Amino Acids

21.62

Weight (kDa)

9.83

Isoelectric Point (pI)

60.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	136 - 188	6.1e-20	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	76
AccBSI	CCGCTC	1 cut(s)	458
AccI	GTMKAC	1 cut(s)	191
AciI	CCGC	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	124, 532
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	14, 131, 153, 392
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	3 cut(s)	38, 255, 403
ApeKI	GCWGC	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	256, 404, 554
AsuC2I	CCSGG	1 cut(s)	399
AsuII	TTCGAA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	554
BaeI	ACNNNNGTAYC	2 cut(s)	98, 131
BauI	CACGAG	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	228, 353, 549
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	221, 459
BlsI	GCNGC	2 cut(s)	222, 460
Bme1390I	CCNGG	2 cut(s)	105, 399
Bme18I	GGWCC	1 cut(s)	554
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	3 cut(s)	256, 404, 554
BmrFI	CCNGG	2 cut(s)	105, 399
BmsI	GCATC	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 532
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	124, 532
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	64, 468
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	3 cut(s)	40, 257, 405
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	124, 532
BsmAI	GTCTC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	40, 257, 405
Bsp119I	TTCGAA	1 cut(s)	325
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	3 cut(s)	40, 257, 405
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	325
BsrBI	CCGCTC	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	306
BssSI	CACGAG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	103, 397
BstV1I	GCAGC	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	40, 257, 405
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	1 cut(s)	543
Cfr13I	GGNCC	3 cut(s)	256, 404, 554
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	4 cut(s)	110, 214, 238, 544
CviJI	RGCY	8 cut(s)	40, 175, 223, 227, 257, 298, 405, 461
CviKI_1	RGCY	8 cut(s)	40, 175, 223, 227, 257, 298, 405, 461
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco147I	AGGCCT	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	103
FaeI	CATG	4 cut(s)	113, 217, 241, 547
FaiI	YATR	9 cut(s)	44, 111, 146, 185, 197, 215, 239, 333, 545
FatI	CATG	4 cut(s)	109, 213, 237, 543
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	221, 459
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	2 cut(s)	221, 459
FspBI	CTAG	3 cut(s)	228, 353, 549
GluI	GCNGC	2 cut(s)	221, 459
HaeIII	GGCC	3 cut(s)	40, 257, 405
HapII	CCGG	1 cut(s)	398
Hin1II	CATG	4 cut(s)	113, 217, 241, 547
HinfI	GANTC	2 cut(s)	416, 445
HpaII	CCGG	1 cut(s)	398
Hpy166II	GTNNAC	3 cut(s)	115, 192, 209
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	6 cut(s)	14, 131, 153, 248, 497, 544
Hpy8I	GTNNAC	3 cut(s)	115, 192, 209
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	2 cut(s)	4, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	4 cut(s)	113, 217, 241, 547
LmnI	GCTCC	2 cut(s)	217, 455
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	3 cut(s)	228, 353, 549
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	310
MbiI	CCGCTC	1 cut(s)	458
MboII	GAAGA	5 cut(s)	168, 171, 174, 211, 462
MluCI	AATT	1 cut(s)	321
MnlI	CCTC	8 cut(s)	24, 30, 42, 82, 417, 446, 526, 545
MseI	TTAA	1 cut(s)	513
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	105, 399
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	1 cut(s)	399
NlaIII	CATG	4 cut(s)	113, 217, 241, 547
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	113
NspV	TTCGAA	1 cut(s)	325
PagI	TCATGA	1 cut(s)	543
PaqCI	CACCTGC	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	40
PciI	ACATGT	1 cut(s)	109
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	416, 445
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	222, 460
PscI	ACATGT	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspPI	GGNCC	3 cut(s)	256, 404, 554
PstNI	CAGNNNCTG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	2 cut(s)	221, 459
Sau96I	GGNCC	3 cut(s)	256, 404, 554
ScrFI	CCNGG	2 cut(s)	105, 399
SetI	ASST	5 cut(s)	70, 229, 267, 349, 432
SfaNI	GCATC	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	1 cut(s)	321
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	3 cut(s)	228, 353, 549
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	103, 397
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	325, 448
TasI	AATT	1 cut(s)	321
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	416, 445
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	212, 458
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	554
XceI	RCATGY	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	3 cut(s)	228, 353, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.