Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

61256333 .. 61259329

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGACCAAACACCTGCTTCAAGATACTTCAGGTATAGTTTCAAGAAGACGAAGAAACCAAAAGCCCAAGAACATAATGTCTACTATGAATATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTCGTTTATTTAAACCCGGAAGTGGAGAAACATATTATCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCAGCATTAACCTCGCCACCTCTGCCTCCAGAACCATCATCGTGGTCACCACCTGAAAAACAAACTTATCACGACCTGCCTGTTGAAGATTTTCTTAGTGGAGGTGGCTCCCAGTCATTTGTAACCCCCATGGAACAGATACGGACAAATTTAGTTAACAATGACGTAACACTACAACCTGAACTCATGGATAAACTGAAAGCCAATCCTAATGGCATGAAAGGAGCTGATACCAACCCGGCAACACCAAGAAATTCTGGCGATGAGAGAAGATCCATCCTGAGGTCCTCATCTGGAAAGGGAGTTAACAGAAACAGTTCAGAGGTCAATTCTGGACGGAAGAGGCGTTATTCATCTATACATAGCAATGATGGACTTGAACCAGTATTAGAGGATAATGGATGTCAGCATTCTGATCCAAACTTCAACGTAATAAGGTTATCTGGAAATGGCCCAACACCTGAGCATGAATTATTGATGGAAACTGGACCGACACAGACACAACAACCTATCATCAATCAACCACTGGAAAAAGTGACTGATGCCATTCGAATGGAACTGAAATCCCATTTTGAAATACCGGGTGGCCCTCAAGTAGAATCCCTGAACAAACTGACTGCTGGAATGAATCGAAGAGGAGCGGCTATGCTTTTCTATCAAACTTGTGTTCTTGCTACTCGTGATTTCGTAAAAGTTAAACAAATTGCCCCTTATGAGGATGTTCTCATTACTAGAGGACCAAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

322

Amino Acids

35.68

Weight (kDa)

8.76

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	270 - 322	1e-19	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	21
Acc36I	ACCTGC	2 cut(s)	21, 303
AccBSI	CCGCTC	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	1 cut(s)	860
AclWI	GGATC	2 cut(s)	486, 629
AcsI	RAATTY	2 cut(s)	367, 472
AcuI	CTGAAG	2 cut(s)	12, 204
AfiI	CCNNNNNNNGG	3 cut(s)	152, 501, 934
AgsI	TTSAA	7 cut(s)	20, 42, 193, 305, 599, 646, 794
AluBI	AGCT	4 cut(s)	116, 173, 187, 446
AluI	AGCT	4 cut(s)	116, 173, 187, 446
AlwI	GGATC	2 cut(s)	486, 629
AoxI	GGCC	2 cut(s)	670, 805
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	367, 472
Asp700I	GAANNNNTTC	2 cut(s)	309, 535
AspS9I	GGNCC	5 cut(s)	504, 671, 707, 806, 956
AsuC2I	CCSGG	3 cut(s)	147, 458, 801
AsuHPI	GGTGA	2 cut(s)	207, 258
AsuII	TTCGAA	1 cut(s)	769
AvaII	GGWCC	3 cut(s)	504, 707, 956
AxyI	CCTNAGG	1 cut(s)	500
BauI	CACGAG	1 cut(s)	897
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	4 cut(s)	262, 503, 584, 691
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BcnI	CCSGG	3 cut(s)	147, 458, 801
BfaI	CTAG	2 cut(s)	117, 951
BfuAI	ACCTGC	2 cut(s)	21, 303
BisI	GCNGC	2 cut(s)	110, 861
BlsI	GCNGC	2 cut(s)	111, 862
Bme1390I	CCNGG	3 cut(s)	147, 458, 801
Bme18I	GGWCC	3 cut(s)	504, 707, 956
BmgT120I	GGNCC	5 cut(s)	504, 671, 707, 806, 956
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	3 cut(s)	147, 458, 801
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	751
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	795
BpuMI	CCSGG	3 cut(s)	147, 458, 801
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 501, 934
Bse1I	ACTGG	4 cut(s)	331, 602, 709, 750
Bse21I	CCTNAGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	592
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	3 cut(s)	495, 626, 943
BseLI	CCNNNNNNNGG	3 cut(s)	152, 501, 934
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	2 cut(s)	491, 672
BseNI	ACTGG	4 cut(s)	331, 602, 709, 750
BseRI	GAGGAG	2 cut(s)	165, 870
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	2 cut(s)	672, 807
BsiSI	CCGG	3 cut(s)	147, 458, 800
BslI	CCNNNNNNNGG	3 cut(s)	152, 501, 934
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	672, 807
Bsp119I	TTCGAA	1 cut(s)	769
Bsp143I	GATC	2 cut(s)	491, 634
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	1 cut(s)	860
BspANI	GGCC	2 cut(s)	672, 807
BspCNI	CTCAG	2 cut(s)	492, 673
BspLI	GGNNCC	1 cut(s)	328
BspMI	ACCTGC	2 cut(s)	21, 303
BspPI	GGATC	2 cut(s)	486, 629
BspT104I	TTCGAA	1 cut(s)	769
BsrBI	CCGCTC	1 cut(s)	860
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	4 cut(s)	331, 602, 709, 750
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	491, 634
BssSI	CACGAG	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	897
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	2 cut(s)	554, 847
BstBI	TTCGAA	1 cut(s)	769
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	4 cut(s)	181, 314, 500, 681
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	495, 626, 943
BstKTI	GATC	2 cut(s)	494, 637
BstMBI	GATC	2 cut(s)	491, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstPI	GGTNACC	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	145, 456, 799
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	491
BstXI	CCANNNNNNTGG	2 cut(s)	261, 772
BstYI	RGATCY	1 cut(s)	491
Bsu36I	CCTNAGG	1 cut(s)	500
BsuRI	GGCC	2 cut(s)	672, 807
BtgI	CCRYGG	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	495, 626, 943
BtsIMutI	CAGTG	1 cut(s)	743
BveI	ACCTGC	2 cut(s)	21, 303
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	5 cut(s)	504, 671, 707, 806, 956
CviAII	CATG	7 cut(s)	103, 127, 209, 349, 406, 436, 686
DdeI	CTNAG	4 cut(s)	181, 314, 500, 681
DpnI	GATC	2 cut(s)	493, 636
DpnII	GATC	2 cut(s)	491, 634
DraI	TTTAAA	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	554, 847
EarI	CTCTTC	2 cut(s)	554, 847
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	3 cut(s)	504, 707, 956
Eco57I	CTGAAG	2 cut(s)	12, 204
Eco81I	CCTNAGG	1 cut(s)	500
Eco91I	GGTNACC	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	504
EcoO65I	GGTNACC	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	7 cut(s)	106, 130, 212, 352, 409, 439, 689
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	7 cut(s)	102, 126, 208, 348, 405, 435, 685
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	2 cut(s)	110, 861
FokI	GGATG	3 cut(s)	482, 633, 950
Fsp4HI	GCNGC	2 cut(s)	110, 861
FspBI	CTAG	2 cut(s)	117, 951
GluI	GCNGC	2 cut(s)	110, 861
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	672, 807
HapII	CCGG	3 cut(s)	147, 458, 800
Hin1II	CATG	7 cut(s)	106, 130, 212, 352, 409, 439, 689
HincII	GTYRAC	2 cut(s)	376, 526
HindII	GTYRAC	2 cut(s)	376, 526
HinfI	GANTC	3 cut(s)	212, 818, 847
HpaI	GTTAAC	2 cut(s)	376, 526
HpaII	CCGG	3 cut(s)	147, 458, 800
HphI	GGTGA	2 cut(s)	207, 258
Hpy166II	GTNNAC	4 cut(s)	81, 98, 376, 526
Hpy188I	TCNGA	2 cut(s)	541, 634
Hpy188III	TCNNGA	9 cut(s)	20, 42, 248, 290, 499, 513, 552, 663, 899
Hpy8I	GTNNAC	4 cut(s)	81, 98, 376, 526
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	2 cut(s)	384, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	4 cut(s)	181, 314, 500, 681
HpySE526I	ACGT	2 cut(s)	384, 648
Hsp92II	CATG	7 cut(s)	106, 130, 212, 352, 409, 439, 689
KspAI	GTTAAC	2 cut(s)	376, 526
Kzo9I	GATC	2 cut(s)	491, 634
LmnI	GCTCC	5 cut(s)	106, 178, 332, 443, 857
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	2 cut(s)	117, 951
MaeII	ACGT	2 cut(s)	384, 648
MaeIII	GTNAC	4 cut(s)	264, 340, 385, 754
MalI	GATC	2 cut(s)	493, 636
MbiI	CCGCTC	1 cut(s)	860
MboI	GATC	2 cut(s)	491, 634
MboII	GAAGA	6 cut(s)	57, 63, 317, 501, 571, 864
MflI	RGATCY	1 cut(s)	491
MluCI	AATT	5 cut(s)	367, 472, 547, 689, 921
MlyI	GAGTC	1 cut(s)	206
MroXI	GAANNNNTTC	2 cut(s)	309, 535
MseI	TTAA	5 cut(s)	141, 227, 375, 525, 915
MslI	CAYNNNNRTG	4 cut(s)	207, 259, 585, 770
MspI	CCGG	3 cut(s)	147, 458, 800
MspR9I	CCNGG	3 cut(s)	147, 458, 801
Mva1269I	GAATGC	1 cut(s)	628
MwoI	GCNNNNNNNGC	1 cut(s)	241
NciI	CCSGG	3 cut(s)	147, 458, 801
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	2 cut(s)	491, 634
NlaIII	CATG	7 cut(s)	106, 130, 212, 352, 409, 439, 689
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	2 cut(s)	264, 754
NspV	TTCGAA	1 cut(s)	769
PaqCI	CACCTGC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	2 cut(s)	309, 535
PfeI	GAWTC	2 cut(s)	818, 847
PkrI	GCNGC	2 cut(s)	111, 862
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	504
PspEI	GGTNACC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	5 cut(s)	504, 671, 707, 806, 956
PspPPI	RGGWCCY	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	491
RseI	CAYNNNNRTG	4 cut(s)	207, 259, 585, 770
SaqAI	TTAA	5 cut(s)	141, 227, 375, 525, 915
SatI	GCNGC	2 cut(s)	110, 861
Sau3AI	GATC	2 cut(s)	491, 634
Sau96I	GGNCC	5 cut(s)	504, 671, 707, 806, 956
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	147, 458, 801
SfaNI	GCATC	1 cut(s)	751
SfuI	TTCGAA	1 cut(s)	769
SinI	GGWCC	3 cut(s)	504, 707, 956
SmiMI	CAYNNNNRTG	4 cut(s)	207, 259, 585, 770
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
Sse9I	AATT	5 cut(s)	367, 472, 547, 689, 921
SsiI	CCGC	1 cut(s)	860
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	117, 951
StyD4I	CCNGG	3 cut(s)	145, 456, 799
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	2 cut(s)	387, 651
TaqI	TCGA	2 cut(s)	769, 850
TaqII	GACCGA	1 cut(s)	724
TasI	AATT	5 cut(s)	367, 472, 547, 689, 921
TauI	GCSGC	1 cut(s)	863
TfiI	GAWTC	2 cut(s)	818, 847
Tru1I	TTAA	5 cut(s)	141, 227, 375, 525, 915
Tru9I	TTAA	5 cut(s)	141, 227, 375, 525, 915
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	2 cut(s)	264, 754
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	2 cut(s)	264, 754
TspDTI	ATGAA	5 cut(s)	101, 452, 561, 702, 860
TspGWI	ACGGA	2 cut(s)	376, 571
TspRI	CASTG	1 cut(s)	750
VpaK11BI	GGWCC	3 cut(s)	504, 707, 956
XapI	RAATTY	2 cut(s)	367, 472
XmiI	GTMKAC	1 cut(s)	80
XmnI	GAANNNNTTC	2 cut(s)	309, 535
XspI	CTAG	2 cut(s)	117, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.