Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

54756513 .. 54757550

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20715

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTCGTTTATTTAAACTTGGAAGTGGAGAAACATATTATCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACAAACCCATGACTCACCTTCTGCATTCACCTTGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGGAAGACAAACTTATCAAGACCTGCCTGTTGAAGATTTTCTTAGTGGAGGTGGCTCCCAGTCATTTGCAACTCCCACGGAACAGATACGGACAAATTTAGTTAACAATGACCGACAAAATGAAGTGCTGGATGATCTGCGAGCCAGTCTTATTGGCAAGAGAGGAGCTGATGCCAACCTGGCAACACCAAGGAATTCCGGAGATCCGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

136

Amino Acids

14.82

Weight (kDa)

5.1

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	5
AccIII	TCCGGA	1 cut(s)	395
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	292, 391
AgsI	TTSAA	2 cut(s)	118, 230
AjnI	CCWGG	2 cut(s)	196, 375
AluBI	AGCT	4 cut(s)	41, 98, 112, 365
AluI	AGCT	4 cut(s)	41, 98, 112, 365
AlwI	GGATC	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	292, 391
Asp700I	GAANNNNTTC	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	132, 145, 183
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	198, 377
BfaI	CTAG	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	228
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	198, 377
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	198, 377
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	273, 386
BsaWI	WCCGGW	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	256, 342
BseAI	TCCGGA	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	198, 377
BseDI	CCNNGG	2 cut(s)	273, 386
BseGI	GGATG	1 cut(s)	334
BseNI	ACTGG	2 cut(s)	256, 342
BseRI	GAGGAG	2 cut(s)	90, 375
BseXI	GCAGC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	149
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	331, 400
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	256, 342
BssECI	CCNNGG	2 cut(s)	273, 386
BssMI	GATC	2 cut(s)	331, 400
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	198, 377
BstC8I	GCNNGC	2 cut(s)	39, 339
BstDEI	CTNAG	2 cut(s)	106, 239
BstDSI	CCRYGG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	2 cut(s)	334, 403
BstMBI	GATC	2 cut(s)	331, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 377
BstNI	CCWGG	2 cut(s)	198, 377
BstPI	GGTNACC	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	196, 375
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	400
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	39, 339
CviAII	CATG	4 cut(s)	28, 52, 134, 186
CviJI	RGCY	7 cut(s)	37, 41, 98, 112, 252, 341, 365
CviKI_1	RGCY	7 cut(s)	37, 41, 98, 112, 252, 341, 365
DdeI	CTNAG	2 cut(s)	106, 239
DpnI	GATC	2 cut(s)	333, 402
DpnII	GATC	2 cut(s)	331, 400
DraI	TTTAAA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	189
EcoO65I	GGTNACC	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	196, 375
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	4 cut(s)	31, 55, 137, 189
FaiI	YATR	6 cut(s)	11, 29, 53, 88, 135, 187
FalI	AAGNNNNNCTT	4 cut(s)	193, 225, 222, 254
FatI	CATG	4 cut(s)	27, 51, 133, 185
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	156
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	4 cut(s)	31, 55, 137, 189
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	137
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	3 cut(s)	132, 145, 183
Hpy166II	GTNNAC	3 cut(s)	6, 23, 301
Hpy188III	TCNNGA	4 cut(s)	173, 215, 396, 408
Hpy8I	GTNNAC	3 cut(s)	6, 23, 301
HpyAV	CCTTC	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	149, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 377
HpyF3I	CTNAG	2 cut(s)	106, 239
Hsp92II	CATG	4 cut(s)	31, 55, 137, 189
Kpn2I	TCCGGA	1 cut(s)	395
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	331, 400
LmnI	GCTCC	4 cut(s)	31, 103, 257, 362
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	2 cut(s)	333, 402
MboI	GATC	2 cut(s)	331, 400
MboII	GAAGA	3 cut(s)	25, 213, 242
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	2 cut(s)	292, 391
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	111, 174, 180, 239, 353
MroI	TCCGGA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	66, 300
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	198, 377
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	198, 377
MwoI	GCNNNNNNNGC	2 cut(s)	166, 377
NdeII	GATC	2 cut(s)	331, 400
NlaIII	CATG	4 cut(s)	31, 55, 137, 189
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	196, 375
PspEI	GGTNACC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	196, 375
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	66, 300
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	331, 400
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	198, 377
SfaNI	GCATC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	292, 391
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	196, 375
StyI	CCWWGG	1 cut(s)	386
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	292, 391
Tru1I	TTAA	2 cut(s)	66, 300
Tru9I	TTAA	2 cut(s)	66, 300
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	2 cut(s)	26, 333
TspGWI	ACGGA	3 cut(s)	290, 301, 393
XapI	RAATTY	2 cut(s)	292, 391
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.