Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Reverse (-)

23239018 .. 23240050

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001938

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTCAGCACCATTTGGTTTAGTGACACTGGCATTAATAGGAAACTTATACGTGTTTGTACATGGAAAAGAAATCTGCATCCAACTTCTTTCCCTGCCAAGAACAAATCCGAGGCACAGATGTGCGAGTCTACAAGTAGCTCAGGATTATGCACCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCACTGAAGCAGCATTAGCCTCATCGCCAAAGCCAAACAACACCATTGAGACCCCGATTACTGTCATCAGCTGCAAGGACTGGTTACCCGAAGATGATGGCATTGAGGTTATCTTACCTTCAACTGAAATACCTTCATTGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCAACTACAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

146

Amino Acids

15.85

Weight (kDa)

5.35

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	2 cut(s)	182, 219
AfaI	GTAC	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	315, 334, 390
AleI	CACNNNNGTG	1 cut(s)	121
AluBI	AGCT	2 cut(s)	141, 264
AluI	AGCT	2 cut(s)	141, 264
Alw26I	GTCTC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	203, 264
ApoI	RAATTY	1 cut(s)	420
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	215, 251
BccI	CCATC	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	204, 265
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	205, 266
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmsI	GCATC	4 cut(s)	88, 200, 337, 359
Bpu10I	CCTNAGC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	5
BsaAI	YACGTR	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	34, 278
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	4 cut(s)	79, 191, 350, 352
BseMII	CTCAG	3 cut(s)	19, 156, 359
BseNI	ACTGG	2 cut(s)	34, 278
BseXI	GCAGC	2 cut(s)	215, 251
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	151
Bso31I	GGTCTC	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	59
Bsp1720I	GCTNAGC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	18, 155, 360
BspTNI	GGTCTC	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	34, 278
BssECI	CCNNGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	256, 411
BstAUI	TGTACA	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	5, 142, 368
BstEII	GGTNACC	1 cut(s)	276
BstF5I	GGATG	4 cut(s)	79, 191, 350, 352
BstMAI	GTCTC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	215, 251
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	79, 191, 350, 352
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	4 cut(s)	27, 195, 357, 407
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	2 cut(s)	63, 187
CviJI	RGCY	5 cut(s)	141, 159, 212, 226, 264
CviKI_1	RGCY	5 cut(s)	141, 159, 212, 226, 264
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	3 cut(s)	5, 142, 368
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	182, 219
Eco91I	GGTNACC	1 cut(s)	276
EcoO65I	GGTNACC	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	352
FaeI	CATG	2 cut(s)	66, 190
FaiI	YATR	5 cut(s)	50, 64, 151, 188, 381
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	62, 186
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	204, 265
FokI	GGATG	4 cut(s)	66, 178, 337, 359
Fsp4HI	GCNGC	2 cut(s)	204, 265
GluI	GCNGC	2 cut(s)	204, 265
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	2 cut(s)	66, 190
HinfI	GANTC	2 cut(s)	128, 370
HpaII	CCGG	1 cut(s)	354
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	4 cut(s)	321, 328, 336, 396
HpyCH4III	ACNGT	2 cut(s)	256, 411
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	79, 153, 267, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	5, 142, 368
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	66, 190
LpnPI	CCDG	8 cut(s)	15, 108, 129, 167, 169, 173, 259, 367
Lsp1109I	GCAGC	2 cut(s)	215, 251
LweI	GCATC	4 cut(s)	88, 200, 337, 359
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	23, 276
MboII	GAAGA	2 cut(s)	296, 350
MluCI	AATT	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	137, 379
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	106, 223, 292
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	66, 190
NmuCI	GTSAC	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	205, 266
PleI	GAGTC	2 cut(s)	136, 378
PpsI	GAGTC	2 cut(s)	136, 378
Ppu21I	YACGTR	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	36
PspEI	GGTNACC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	2 cut(s)	204, 265
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	2 cut(s)	137, 379
SetI	ASST	7 cut(s)	55, 143, 186, 266, 303, 313, 328
SfaNI	GCATC	4 cut(s)	88, 200, 337, 359
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	256, 411
TaiI	ACGT	1 cut(s)	55
TasI	AATT	1 cut(s)	420
TatI	WGTACW	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	4 cut(s)	34, 202, 364, 414
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	2 cut(s)	203, 264
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	4 cut(s)	34, 202, 364, 414
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.