Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Reverse (-)

47987210 .. 47989765

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG421500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGCAGCATTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTGGCGCCCCTGCAGAATCTGATCGCGCCGCAGACGGAGGACGGCGTTTCGGTTGCCGGAAGCTACGGCTCCAAAGGCCAGTTTGTATATGGAAAAGAAAATCTGCATCCAACTTCTTTCCCTACCAAGAACAAATCCGAGGCACAGATGTGCGAGGCTACAAGTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGTAGCAGCATTAGCCTCATCGCCAAAGCTAAATAACACCATTGAGACCCCGATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTTCGACTGAAATACCTTCATCGAAGGAAGATGTGGATGCATCTGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

180

Amino Acids

19.5

Weight (kDa)

6.31

Isoelectric Point (pI)

70.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	67
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	52, 92
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	2 cut(s)	39, 68
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	211
AluBI	AGCT	4 cut(s)	126, 231, 331, 369
AluI	AGCT	4 cut(s)	126, 231, 331, 369
Alw26I	GTCTC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	5 cut(s)	7, 296, 299, 308, 369
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	70, 91
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	5 cut(s)	19, 308, 311, 320, 356
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	3 cut(s)	39, 121, 145
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	6 cut(s)	8, 92, 297, 300, 309, 370
BlsI	GCNGC	6 cut(s)	9, 93, 298, 301, 310, 371
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	69, 133
BmsI	GCATC	4 cut(s)	178, 293, 442, 464
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	232
BsaHI	GRCGYC	2 cut(s)	39, 68
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	69, 142, 383
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	3 cut(s)	169, 284, 457
BseMII	CTCAG	3 cut(s)	38, 246, 464
BseNI	ACTGG	3 cut(s)	69, 142, 383
BseXI	GCAGC	5 cut(s)	19, 308, 311, 320, 356
BseYI	CCCAGC	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	33, 84
BspACI	CCGC	2 cut(s)	52, 92
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	37, 245, 465
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	69, 133
BspMAI	CTGCAG	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	341
BsrI	ACTGG	3 cut(s)	69, 142, 383
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	33, 84
BssNI	GRCGYC	2 cut(s)	39, 68
Bst4CI	ACNGT	2 cut(s)	361, 519
BstACI	GRCGYC	2 cut(s)	39, 68
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	24, 232, 473
BstEII	GGTNACC	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	169, 284, 457
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	70, 91
BstKTI	GATC	2 cut(s)	36, 87
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	2 cut(s)	33, 84
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 138, 249, 305, 308, 314
BstPI	GGTNACC	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	74
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	5 cut(s)	19, 308, 311, 320, 356
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	169, 284, 457
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	462, 515
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	2 cut(s)	70, 91
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	9 cut(s)	126, 132, 141, 221, 231, 252, 317, 331, 369
CviKI_1	RGCY	9 cut(s)	126, 132, 141, 221, 231, 252, 317, 331, 369
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	24, 232, 473
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	2 cut(s)	35, 86
DpnII	GATC	2 cut(s)	33, 84
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	381
EcoO65I	GGTNACC	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	457
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
FaeI	CATG	1 cut(s)	283
FaiI	YATR	5 cut(s)	151, 153, 241, 281, 486
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	6 cut(s)	8, 92, 297, 300, 309, 370
FokI	GGATG	3 cut(s)	156, 271, 464
Fsp4HI	GCNGC	6 cut(s)	8, 92, 297, 300, 309, 370
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	2 cut(s)	69, 90
GluI	GCNGC	6 cut(s)	8, 92, 297, 300, 309, 370
GsaI	CCCAGC	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	2 cut(s)	70, 91
Hin1I	GRCGYC	2 cut(s)	39, 68
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	2 cut(s)	68, 89
HinP1I	GCGC	2 cut(s)	68, 89
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	79, 475
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	84, 202
Hpy188III	TCNNGA	2 cut(s)	234, 288
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	2 cut(s)	41, 60
HpyAV	CCTTC	5 cut(s)	426, 433, 441, 498, 501
HpyCH4III	ACNGT	2 cut(s)	361, 519
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	5 cut(s)	76, 169, 243, 372, 455
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 138, 249, 305, 308, 314
HpyF3I	CTNAG	3 cut(s)	24, 232, 473
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	2 cut(s)	39, 68
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	2 cut(s)	68, 89
KasI	GGCGCC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	33, 84
LmnI	GCTCC	2 cut(s)	4, 137
Lsp1109I	GCAGC	5 cut(s)	19, 308, 311, 320, 356
LweI	GCATC	4 cut(s)	178, 293, 442, 464
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	2 cut(s)	35, 86
MboI	GATC	2 cut(s)	33, 84
MboII	GAAGA	3 cut(s)	34, 455, 513
MluCI	AATT	1 cut(s)	528
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	6 cut(s)	11, 94, 196, 211, 328, 397
Mph1103I	ATGCAT	1 cut(s)	457
MslI	CAYNNNNRTG	1 cut(s)	211
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	6 cut(s)	13, 138, 249, 305, 308, 314
NarI	GGCGCC	1 cut(s)	68
NdeII	GATC	2 cut(s)	33, 84
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	69, 133
NmuCI	GTSAC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	6 cut(s)	9, 93, 298, 301, 310, 371
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	483
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	483
PspEI	GGTNACC	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	69, 133
PspPI	GGNCC	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	369
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	211
SatI	GCNGC	6 cut(s)	8, 92, 297, 300, 309, 370
Sau3AI	GATC	2 cut(s)	33, 84
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	484
SetI	ASST	9 cut(s)	22, 42, 128, 233, 279, 333, 371, 408, 433
SfaNI	GCATC	4 cut(s)	178, 293, 442, 464
SfcI	CTRYAG	1 cut(s)	74
SfoI	GGCGCC	1 cut(s)	69
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	211
Sse9I	AATT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	52, 92
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	361, 519
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	36, 419, 437
TasI	AATT	1 cut(s)	528
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	469, 522
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	5 cut(s)	7, 296, 299, 308, 369
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	2 cut(s)	469, 522
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XspI	CTAG	1 cut(s)	498
ZraI	GACGTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.