Rorug01G0432400

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000708
Physical Location & Seq
Forward (+)
53073209 .. 53077023
3815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0432400.1

Sequence Viewer

Length: 1521 bp
ATGGATTTTGCTTCCACGGTGGTAGCATTAAGTTTAGCGTTAGTTTTAGCTATAGTTGTGGTTAGAGACCATGCTCGAAGATTGCGTGACAAAAACAAGAGATATCATCCTGTTGCAGGAACTATCGTGCACCAACTGATCAACTTCCCTAGGGTGCACCATTACATGACTGAGCTTGCATGCAAGTACAAAACTTACAGAATGCTCGACTTTTTCAAAGGTGCGGTTTACACAGCAGATCCTGCAAATGTGGAATATGTGCTCAAAACAAACTTTACTAATTATGGCAAGGGGTCGTATATATACAGCATTATATCAGATGTTGTGGGCGATGGGATCTTCGCAGTGGATGGGCAAAAATGGCGACATCAGAGGAAGGTGATGAGTGCTGAATTCTCAACAAAAGTAGTGAGAGACTTCAGCTGTGCAGTTTTCAGAACTAATGCAGTTAAACTTGCTGGCATAATTTATGAAGCTGCAACCAGCAACCAAGCAATAGAGATCCAAGATTTGTTTATGAAAGCAAGCTTAGACTCAATCATCAAGATTCTACTTGGTATCGAACTAGACAGCATGAGTGGAAAAGATGAAGAAGGCAACCGGTTTTCCCATGCTTTTGAATCGGAGCAAGAAGCTGCCTTGTATCGGTTAATTGATGTATTCTGGAAGATCAAACGCTTCTTAAACATCGGTAAGGAAGCCGAGCTAAAGAAAAACCTCAAAGTGGTTGATCAATTTGTGTATAAATTAATCAATAGCAAGATTGAAACTTTCCAGAATCCAGAAGTCAACCTATTGCTGAAGAAAAGAGACTTGGTTTCAAGGCGTTTGGAATTGAAAGATACTGATCCAAAGTACCTCAGAGACATAGTCCTCTGTGTTACTGTTGCTGGACAAGACACGACAGCTAGCTCTCTTTCATGGTTTGTTTATATGATGTGCAAGCATCTTCACATACAAGAAAAGATTGCACAGGAAGTTAGAGAAGTAATAAATTTGAAAGATAATGTAAGTGTTGATGAGCTTGTAGCAAGCCTTGATCAAGAAGCCCTTAACAAAATGCAATATCTCCATGCAGCTTTAAGTGAAACAATCAGACTCTATCCTTCAGTTCCAATGAACACAAGGATGTGCTTTTCTGATGATACCTGGCCAGATGGATTTAGTGTCAAAAAGGGGGACATGGTGGTATACCAACCTTATGCAATGGGAAGGATGAAATCTGTATGGGGAGATGATGCAGAAGAGTTTCGGCCAGAGAGATGGCTCGATGAAAATGGTCTTTTCCAGGACGAAAGCCCTTATAAATTCATAGCCTTCAGTGCTGGTCCAAGAATTTGTCTTGGAAAGGAACATGCCTATACGCAGATGAAGATCTTTTCTGCTATGCTTTTAGGCAGCTATATATTCAAGCTAGCTGATGAAAAAAAAGTGGTCACTTACAAGACCATGGTCACCCTACCAATTGATGGAGGTCTCTATGTGAATGCCTCCCCAAGATTATGGCGTGCAAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

506

Amino Acids

58.0

Weight (kDa)

8.7

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 45 - 488 3.5e-75 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1305
AccB7I CCANNNNNTGG 1 cut(s) 1469
AccI GTMKAC 1 cut(s) 1191
AciI CCGC 1 cut(s) 224
AclWI GGATC 4 cut(s) 233, 344, 496, 842
AcoI YGGCCR 2 cut(s) 1151, 1253
AcsI RAATTY 4 cut(s) 392, 994, 1307, 1335
AcuI CTGAAG 4 cut(s) 403, 821, 1092, 1303
AfaI GTAC 2 cut(s) 188, 857
AfiI CCNNNNNNNGG 4 cut(s) 116, 645, 724, 1469
AgeI ACCGGT 1 cut(s) 600
AgsI TTSAA 7 cut(s) 217, 620, 767, 822, 838, 1000, 1411
AjnI CCWGG 2 cut(s) 1148, 1287
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
Alw21I GWGCWC 3 cut(s) 132, 159, 264
Alw26I GTCTC 5 cut(s) 60, 408, 804, 858, 1481
Alw44I GTGCAC 2 cut(s) 128, 155
AlwI GGATC 4 cut(s) 233, 344, 496, 842
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 2 cut(s) 1151, 1253
ApaLI GTGCAC 2 cut(s) 128, 155
ApeKI GCWGC 4 cut(s) 476, 635, 1076, 1398
ApoI RAATTY 4 cut(s) 392, 994, 1307, 1335
AseI ATTAAT 1 cut(s) 749
AsiGI ACCGGT 1 cut(s) 600
Asp700I GAANNNNTTC 1 cut(s) 1248
AspA2I CCTAGG 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 1328
AsuHPI GGTGA 2 cut(s) 391, 1447
AsuNHI GCTAGC 2 cut(s) 908, 1414
AvaII GGWCC 1 cut(s) 1328
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 2 cut(s) 132, 159
BalI TGGCCA 1 cut(s) 1153
Bbv12I GWGCWC 3 cut(s) 132, 159, 264
BbvI GCAGC 4 cut(s) 463, 622, 1088, 1410
BccI CCATC 5 cut(s) 326, 344, 1151, 1257, 1463
BciT130I CCWGG 2 cut(s) 1150, 1289
BclI TGATCA 3 cut(s) 138, 730, 1039
BcoDI GTCTC 5 cut(s) 60, 408, 804, 858, 1481
BfaI CTAG 4 cut(s) 150, 566, 909, 1415
BfmI CTRYAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 1374
BisI GCNGC 4 cut(s) 477, 636, 1077, 1399
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 4 cut(s) 478, 637, 1078, 1400
Bme1390I CCNGG 2 cut(s) 1150, 1289
Bme18I GGWCC 1 cut(s) 1328
BmgT120I GGNCC 1 cut(s) 1328
BmrFI CCNGG 2 cut(s) 1150, 1289
BmsI GCATC 2 cut(s) 955, 1228
BmtI GCTAGC 2 cut(s) 912, 1418
BoxI GACNNNNGTC 1 cut(s) 1451
BsaBI GATNNNNATC 2 cut(s) 846, 1373
BsaI GGTCTC 2 cut(s) 60, 1481
BsaJI CCNNGG 3 cut(s) 15, 149, 1449
BsaWI WCCGGW 1 cut(s) 600
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 645, 724, 1469
Bse118I RCCGGY 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 1212
Bse8I GATNNNNATC 2 cut(s) 846, 1373
BseBI CCWGG 2 cut(s) 1150, 1289
BseDI CCNNGG 3 cut(s) 15, 149, 1449
BseGI GGATG 4 cut(s) 106, 355, 1134, 1221
BseJI GATNNNNATC 2 cut(s) 846, 1373
BseLI CCNNNNNNNGG 4 cut(s) 116, 645, 724, 1469
BseMI GCAATG 1 cut(s) 1212
BseMII CTCAG 2 cut(s) 162, 874
BseSI GKGCMC 2 cut(s) 132, 159
BseXI GCAGC 4 cut(s) 463, 622, 1088, 1410
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 2 cut(s) 1153, 1255
BshTI ACCGGT 1 cut(s) 600
BsiHKAI GWGCWC 3 cut(s) 132, 159, 264
BsiSI CCGG 1 cut(s) 601
BslFI GGGAC 1 cut(s) 1193
BslI CCNNNNNNNGG 4 cut(s) 116, 645, 724, 1469
BsmAI GTCTC 5 cut(s) 60, 408, 804, 858, 1481
BsmFI GGGAC 1 cut(s) 1193
BsmI GAATGC 2 cut(s) 207, 1492
BsnI GGCC 2 cut(s) 1153, 1255
Bso31I GGTCTC 2 cut(s) 60, 1481
Bsp1286I GDGCHC 3 cut(s) 132, 159, 264
Bsp143I GATC 9 cut(s) 138, 238, 336, 501, 669, 730, 847, 1039, 1374
Bsp19I CCATGG 1 cut(s) 1449
BspACI CCGC 1 cut(s) 224
BspANI GGCC 2 cut(s) 1153, 1255
BspCNI CTCAG 2 cut(s) 163, 873
BspOI GCTAGC 2 cut(s) 912, 1418
BspPI GGATC 4 cut(s) 233, 344, 496, 842
BspTNI GGTCTC 2 cut(s) 60, 1481
BsrDI GCAATG 1 cut(s) 1212
BsrFI RCCGGY 1 cut(s) 600
BssAI RCCGGY 1 cut(s) 600
BssECI CCNNGG 3 cut(s) 15, 149, 1449
BssMI GATC 9 cut(s) 138, 238, 336, 501, 669, 730, 847, 1039, 1374
BssNAI GTATAC 1 cut(s) 1192
BssT1I CCWWGG 2 cut(s) 149, 1449
Bst1107I GTATAC 1 cut(s) 1192
Bst2UI CCWGG 2 cut(s) 1150, 1289
Bst4CI ACNGT 2 cut(s) 19, 886
Bst6I CTCTTC 1 cut(s) 1239
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 9 cut(s) 177, 181, 460, 526, 910, 944, 1033, 1416, 1509
BstDEI CTNAG 3 cut(s) 171, 529, 860
BstDSI CCRYGG 2 cut(s) 15, 1449
BstEII GGTNACC 1 cut(s) 1453
BstENI CCTNNNNNAGG 1 cut(s) 114
BstF5I GGATG 4 cut(s) 106, 355, 1134, 1221
BstKTI GATC 9 cut(s) 141, 241, 339, 504, 672, 733, 850, 1042, 1377
BstMAI GTCTC 5 cut(s) 60, 408, 804, 858, 1481
BstMBI GATC 9 cut(s) 138, 238, 336, 501, 669, 730, 847, 1039, 1374
BstMWI GCNNNNNNNGC 3 cut(s) 242, 361, 1322
BstNI CCWGG 2 cut(s) 1150, 1289
BstNSI RCATGY 2 cut(s) 183, 1358
BstPAI GACNNNNGTC 1 cut(s) 1451
BstPI GGTNACC 1 cut(s) 1453
BstSCI CCNGG 2 cut(s) 1148, 1287
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 2 cut(s) 132, 159
BstV1I GCAGC 4 cut(s) 463, 622, 1088, 1410
BstX2I RGATCY 4 cut(s) 238, 336, 501, 1374
BstXI CCANNNNNNTGG 2 cut(s) 1263, 1503
BstYI RGATCY 4 cut(s) 238, 336, 501, 1374
BstZ17I GTATAC 1 cut(s) 1192
BsuRI GGCC 2 cut(s) 1153, 1255
BtgI CCRYGG 2 cut(s) 15, 1449
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 4 cut(s) 106, 355, 1134, 1221
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 351, 1327
Cac8I GCNNGC 9 cut(s) 177, 181, 460, 526, 910, 944, 1033, 1416, 1509
CaiI CAGNNNCTG 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 1328
Csp6I GTAC 2 cut(s) 187, 856
CspAI ACCGGT 1 cut(s) 600
CviQI GTAC 2 cut(s) 187, 856
DdeI CTNAG 3 cut(s) 171, 529, 860
DpnI GATC 9 cut(s) 140, 240, 338, 503, 671, 732, 849, 1041, 1376
DpnII GATC 9 cut(s) 138, 238, 336, 501, 669, 730, 847, 1039, 1374
EaeI YGGCCR 2 cut(s) 1151, 1253
Eam1104I CTCTTC 1 cut(s) 1239
EarI CTCTTC 1 cut(s) 1239
Eco130I CCWWGG 2 cut(s) 149, 1449
Eco31I GGTCTC 2 cut(s) 60, 1481
Eco32I GATATC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 1328
Eco57I CTGAAG 4 cut(s) 403, 821, 1092, 1303
Eco91I GGTNACC 1 cut(s) 1453
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 1453
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 2 cut(s) 1148, 1287
EcoRV GATATC 1 cut(s) 104
EcoT14I CCWWGG 2 cut(s) 149, 1449
ErhI CCWWGG 2 cut(s) 149, 1449
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 1193
FbaI TGATCA 3 cut(s) 138, 730, 1039
FblI GTMKAC 1 cut(s) 1191
Fnu4HI GCNGC 4 cut(s) 477, 636, 1077, 1399
FokI GGATG 4 cut(s) 93, 362, 1141, 1228
Fsp4HI GCNGC 4 cut(s) 477, 636, 1077, 1399
FspBI CTAG 4 cut(s) 150, 566, 909, 1415
GluI GCNGC 4 cut(s) 477, 636, 1077, 1399
HaeIII GGCC 2 cut(s) 1153, 1255
HapII CCGG 1 cut(s) 601
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 5 cut(s) 533, 547, 620, 778, 1098
HpaII CCGG 1 cut(s) 601
HphI GGTGA 2 cut(s) 391, 1447
Hpy166II GTNNAC 5 cut(s) 130, 157, 229, 790, 1192
Hpy188I TCNGA 7 cut(s) 319, 372, 437, 625, 863, 1097, 1141
Hpy188III TCNNGA 5 cut(s) 544, 664, 775, 782, 1043
Hpy8I GTNNAC 5 cut(s) 130, 157, 229, 790, 1192
HpyAV CCTTC 5 cut(s) 370, 587, 1116, 1206, 1327
HpyCH4III ACNGT 2 cut(s) 19, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 361, 1322
HpyF3I CTNAG 3 cut(s) 171, 529, 860
Ksp22I TGATCA 3 cut(s) 138, 730, 1039
Kzo9I GATC 9 cut(s) 138, 238, 336, 501, 669, 730, 847, 1039, 1374
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 4 cut(s) 463, 622, 1088, 1410
LweI GCATC 2 cut(s) 955, 1228
MaeI CTAG 4 cut(s) 150, 566, 909, 1415
MaeIII GTNAC 4 cut(s) 86, 880, 1435, 1453
MalI GATC 9 cut(s) 140, 240, 338, 503, 671, 732, 849, 1041, 1376
MboI GATC 9 cut(s) 138, 238, 336, 501, 669, 730, 847, 1039, 1374
MboII GAAGA 8 cut(s) 90, 331, 602, 679, 814, 941, 1256, 1384
MfeI CAATTG 1 cut(s) 1464
MflI RGATCY 4 cut(s) 238, 336, 501, 1374
MhlI GDGCHC 3 cut(s) 132, 159, 264
MlsI TGGCCA 1 cut(s) 1153
MluNI TGGCCA 1 cut(s) 1153
MlyI GAGTC 2 cut(s) 527, 1092
MnlI CCTC 6 cut(s) 366, 728, 869, 884, 1466, 1501
Mox20I TGGCCA 1 cut(s) 1153
MroXI GAANNNNTTC 1 cut(s) 1248
MscI TGGCCA 1 cut(s) 1153
MseI TTAA 8 cut(s) 29, 450, 650, 683, 749, 1053, 1082, 1519
MslI CAYNNNNRTG 1 cut(s) 1127
Msp20I TGGCCA 1 cut(s) 1153
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 1 cut(s) 601
MspR9I CCNGG 2 cut(s) 1150, 1289
MunI CAATTG 1 cut(s) 1464
Mva1269I GAATGC 2 cut(s) 207, 1492
MvaI CCWGG 2 cut(s) 1150, 1289
MwoI GCNNNNNNNGC 3 cut(s) 242, 361, 1322
NcoI CCATGG 1 cut(s) 1449
NdeII GATC 9 cut(s) 138, 238, 336, 501, 669, 730, 847, 1039, 1374
NheI GCTAGC 2 cut(s) 908, 1414
NmeAIII GCCGAG 1 cut(s) 727
NmuCI GTSAC 3 cut(s) 86, 1435, 1453
NspI RCATGY 2 cut(s) 183, 1358
PaeI GCATGC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 2 cut(s) 207, 1492
PdmI GAANNNNTTC 1 cut(s) 1248
PfeI GAWTC 3 cut(s) 547, 620, 778
PflFI GACNNNGTC 1 cut(s) 869
PflMI CCANNNNNTGG 1 cut(s) 1469
PfoI TCCNGGA 1 cut(s) 1287
PinAI ACCGGT 1 cut(s) 600
PkrI GCNGC 4 cut(s) 478, 637, 1078, 1400
PleI GAGTC 2 cut(s) 527, 1092
PpsI GAGTC 2 cut(s) 527, 1092
PshAI GACNNNNGTC 1 cut(s) 1451
PshBI ATTAAT 1 cut(s) 749
PsiI TTATAA 1 cut(s) 1305
Psp6I CCWGG 2 cut(s) 1148, 1287
PspEI GGTNACC 1 cut(s) 1453
PspGI CCWGG 2 cut(s) 1148, 1287
PspPI GGNCC 1 cut(s) 1328
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 4 cut(s) 238, 336, 501, 1374
PsyI GACNNNGTC 1 cut(s) 869
PvuII CAGCTG 1 cut(s) 423
RsaI GTAC 2 cut(s) 188, 857
RsaNI GTAC 2 cut(s) 187, 856
RseI CAYNNNNRTG 1 cut(s) 1127
SaqAI TTAA 8 cut(s) 29, 450, 650, 683, 749, 1053, 1082, 1519
SatI GCNGC 4 cut(s) 477, 636, 1077, 1399
Sau3AI GATC 9 cut(s) 138, 238, 336, 501, 669, 730, 847, 1039, 1374
Sau96I GGNCC 1 cut(s) 1328
SchI GAGTC 2 cut(s) 527, 1092
ScrFI CCNGG 2 cut(s) 1150, 1289
SduI GDGCHC 3 cut(s) 132, 159, 264
SfaNI GCATC 2 cut(s) 955, 1228
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 1328
SmiMI CAYNNNNRTG 1 cut(s) 1127
SphI GCATGC 1 cut(s) 183
SsiI CCGC 1 cut(s) 224
SspMI CTAG 4 cut(s) 150, 566, 909, 1415
StyD4I CCNGG 2 cut(s) 1148, 1287
StyI CCWWGG 2 cut(s) 149, 1449
TaaI ACNGT 2 cut(s) 19, 886
TaqI TCGA 4 cut(s) 76, 207, 561, 1269
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 3 cut(s) 547, 620, 778
Tru1I TTAA 8 cut(s) 29, 450, 650, 683, 749, 1053, 1082, 1519
Tru9I TTAA 8 cut(s) 29, 450, 650, 683, 749, 1053, 1082, 1519
TscAI CASTG 2 cut(s) 351, 1327
TseFI GTSAC 3 cut(s) 86, 1435, 1453
TseI GCWGC 4 cut(s) 476, 635, 1076, 1398
Tsp45I GTSAC 3 cut(s) 86, 1435, 1453
TspRI CASTG 2 cut(s) 351, 1327
Tth111I GACNNNGTC 1 cut(s) 869
Van91I CCANNNNNTGG 1 cut(s) 1469
VneI GTGCAC 2 cut(s) 128, 155
VpaK11BI GGWCC 1 cut(s) 1328
VspI ATTAAT 1 cut(s) 749
XagI CCTNNNNNAGG 1 cut(s) 114
XapI RAATTY 4 cut(s) 392, 994, 1307, 1335
XceI RCATGY 2 cut(s) 183, 1358
XmaJI CCTAGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 1191
XmnI GAANNNNTTC 1 cut(s) 1248
XspI CTAG 4 cut(s) 150, 566, 909, 1415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.