Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Reverse (-)

19280676 .. 19282816

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G263300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATGCCTTGAAGCAGCGTTGTCGCCACCTCTCGCCGCTCTCGCCTTTGGAGAATCTGATGGAGAGGTCACAGCCTTCGATAGTTTATAGAACGCTGGTGAGAGGAGTGCAGAGGAAGGAGCTTCTGGTCATGGATGGTGTTTCAGTCGCCGGAGGAGGAAGGAGCTCAAGGTCTGCTTATGATATGTCGTCATCTTCTTCTTCTTCGGATTCTTCGGGGAAGATTCTGTACAAGACCGACCTTTGCAGGTCCTGGGAGGATTCTGGAAGTTGCCGCTACACCTCCAAAGTGTCAATTCGTGAATACCCGTTAACCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

108

Amino Acids

11.94

Weight (kDa)

9.55

Isoelectric Point (pI)

71.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	40
AciI	CCGC	2 cut(s)	38, 277
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	2 cut(s)	124, 168
AluI	AGCT	2 cut(s)	124, 168
Alw21I	GWGCWC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	170
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	55, 131
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	3 cut(s)	17, 38, 277
BlsI	GCNGC	3 cut(s)	18, 39, 278
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	10, 142
BseRI	GAGGAG	2 cut(s)	120, 171
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	231
BspACI	CCGC	2 cut(s)	38, 277
BspMI	ACCTGC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	40
BsrGI	TGTACA	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	10, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	10, 142
BveI	ACCTGC	1 cut(s)	240
CaiI	CAGNNNCTG	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	3 cut(s)	76, 124, 168
CviKI_1	RGCY	3 cut(s)	76, 124, 168
CviQI	GTAC	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	170
FaeI	CATG	1 cut(s)	136
FaiI	YATR	4 cut(s)	90, 134, 183, 188
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	17, 38, 277
FokI	GGATG	2 cut(s)	17, 149
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	3 cut(s)	17, 38, 277
GluI	GCNGC	3 cut(s)	17, 38, 277
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	4 cut(s)	55, 212, 226, 263
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	2 cut(s)	60, 211
Hpy188III	TCNNGA	2 cut(s)	267, 302
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	3 cut(s)	87, 112, 156
HpyCH4V	TGCA	2 cut(s)	112, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	121, 165
LpnPI	CCDG	7 cut(s)	83, 113, 166, 235, 241, 252, 268
Lsp1109I	GCAGC	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	69
MbiI	CCGCTC	1 cut(s)	40
MboII	GAAGA	6 cut(s)	189, 192, 195, 198, 207, 235
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	1 cut(s)	297
MnlI	CCTC	8 cut(s)	41, 60, 98, 108, 149, 152, 253, 295
MseI	TTAA	2 cut(s)	314, 322
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	69
PfeI	GAWTC	4 cut(s)	55, 212, 226, 263
PkrI	GCNGC	3 cut(s)	18, 39, 278
PpuMI	RGGWCCY	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	252
PspPPI	RGGWCCY	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	314, 322
SatI	GCNGC	3 cut(s)	17, 38, 277
Sau96I	GGNCC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	8 cut(s)	33, 71, 126, 170, 176, 246, 254, 287
SinI	GGWCC	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	2 cut(s)	38, 277
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	254
TaqI	TCGA	1 cut(s)	80
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	1 cut(s)	297
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	2 cut(s)	40, 279
TfiI	GAWTC	4 cut(s)	55, 212, 226, 263
Tru1I	TTAA	2 cut(s)	314, 322
Tru9I	TTAA	2 cut(s)	314, 322
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.