Rh7AG434600

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000708
Physical Location & Seq
Forward (+)
58480438 .. 58481595
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG434600.1

Sequence Viewer

Length: 339 bp
ATGTGCAAGTCTACAAGTAGCTCAGGATTATACACACCCAGCCCAAAGTCCCACTTTGCCCATCAGGTCATGGCATCAGCTGCTACAGAAGCAGCAGCAGCAGCAGCAGCGTTAACCTCATCGCCAAAGCCAAAGAACACCAGTGAGACCCCAATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGGCTCCAACTGAAATACCTTCATCGAAGGAAGATGTGGATGCAGCCAGCACTGCTGGGCTGAGTCTTGTCTATGGTCCTACTACAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

112

Amino Acids

11.66

Weight (kDa)

5.3

Isoelectric Point (pI)

64.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 324
AluBI AGCT 3 cut(s) 21, 80, 168
AluI AGCT 3 cut(s) 21, 80, 168
Alw26I GTCTC 1 cut(s) 140
ApeKI GCWGC 9 cut(s) 80, 92, 95, 98, 101, 104, 107, 168, 254
ApoI RAATTY 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 174
AvaII GGWCC 1 cut(s) 287
BbvI GCAGC 9 cut(s) 67, 104, 107, 110, 113, 116, 119, 155, 266
BccI CCATC 2 cut(s) 69, 188
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 9 cut(s) 81, 93, 96, 99, 102, 105, 108, 169, 255
BlsI GCNGC 9 cut(s) 82, 94, 97, 100, 103, 106, 109, 170, 256
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 2 cut(s) 83, 241
Bpu10I CCTNAGC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 141, 182
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 36, 263
BseNI ACTGG 2 cut(s) 141, 182
BseXI GCAGC 9 cut(s) 67, 104, 107, 110, 113, 116, 119, 155, 266
BseYI CCCAGC 2 cut(s) 38, 266
BslFI GGGAC 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 35, 264
BspLI GGNNCC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 2 cut(s) 141, 182
Bst4CI ACNGT 2 cut(s) 160, 315
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 22, 272
BstEII GGTNACC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 140
BstMWI GCNNNNNNNGC 7 cut(s) 80, 89, 98, 101, 104, 107, 263
BstPI GGTNACC 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 9 cut(s) 67, 104, 107, 110, 113, 116, 119, 155, 266
BstXI CCANNNNNNTGG 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 148, 261, 311
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 287
CviAII CATG 1 cut(s) 70
CviJI RGCY 8 cut(s) 21, 42, 80, 130, 168, 215, 257, 271
CviKI_1 RGCY 8 cut(s) 21, 42, 80, 130, 168, 215, 257, 271
DdeI CTNAG 2 cut(s) 22, 272
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 287
Eco91I GGTNACC 1 cut(s) 180
EcoO65I GGTNACC 1 cut(s) 180
FaeI CATG 1 cut(s) 73
FaiI YATR 3 cut(s) 31, 71, 285
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 69
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 9 cut(s) 81, 93, 96, 99, 102, 105, 108, 169, 255
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 9 cut(s) 81, 93, 96, 99, 102, 105, 108, 169, 255
GluI GCNGC 9 cut(s) 81, 93, 96, 99, 102, 105, 108, 169, 255
GsaI CCCAGC 2 cut(s) 42, 270
Hin1II CATG 1 cut(s) 73
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 1 cut(s) 274
HpaI GTTAAC 1 cut(s) 114
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 2 cut(s) 12, 114
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 2 cut(s) 12, 114
HpyAV CCTTC 3 cut(s) 232, 240, 294
HpyCH4III ACNGT 2 cut(s) 160, 315
HpyCH4V TGCA 3 cut(s) 6, 171, 254
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 89, 98, 101, 104, 107, 263
HpyF3I CTNAG 2 cut(s) 22, 272
Hsp92II CATG 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 7 cut(s) 9, 50, 52, 154, 163, 252, 271
Lsp1109I GCAGC 9 cut(s) 67, 104, 107, 110, 113, 116, 119, 155, 266
LweI GCATC 2 cut(s) 83, 241
MaeIII GTNAC 1 cut(s) 180
MboII GAAGA 1 cut(s) 254
MluCI AATT 2 cut(s) 153, 324
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 2 cut(s) 127, 196
MseI TTAA 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 80, 168
MwoI GCNNNNNNNGC 7 cut(s) 80, 89, 98, 101, 104, 107, 263
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 180
PkrI GCNGC 9 cut(s) 82, 94, 97, 100, 103, 106, 109, 170, 256
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 180
PspFI CCCAGC 2 cut(s) 38, 266
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 287
PvuII CAGCTG 2 cut(s) 80, 168
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 9 cut(s) 81, 93, 96, 99, 102, 105, 108, 169, 255
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 283
SetI ASST 7 cut(s) 23, 69, 82, 119, 170, 207, 232
SfaNI GCATC 2 cut(s) 83, 241
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 287
Sse9I AATT 2 cut(s) 153, 324
TaaI ACNGT 2 cut(s) 160, 315
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 153, 324
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 3 cut(s) 148, 268, 318
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 9 cut(s) 80, 92, 95, 98, 101, 104, 107, 168, 254
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 3 cut(s) 148, 268, 318
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.