pycom08g19290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000708
Physical Location & Seq
Forward (+)
19320638 .. 19322901
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19290.2

Sequence Viewer

Length: 825 bp
ATGGCGAAATTGGACACACGATTGCTCAGAGGGAACTTGGAGAATGTGGACGTCAACACGCCGTTGTTCAGGTACTTGTGCGCTCAGTCTCACTCTCCGTCACTTTCTCCGACGGACACCTTGAAGCAACGTCGCCGCCACCACTCGCCGCTTTCGCCTCTGGAGAATCTGATGCAGAGGTCGCCGCTCTCGCCTCTGGAGAATCTGATGCAGAGGCCGCCGCCTCTGACAGTTTACAGAACGCCGATAGGAGCGGTGGAGAGGGAGGAGGTTTTGGTGATGGACGGTGTTTTGGTCACCGGAGGAGGAGGGAGGAGTTCGAGGTCTGCATCATCTTCGGATTATTTGAGGAAGACTCCGTGCAAGACTGATCTTTACAGGTCCTGGGAGGATTCTCGAAGTTACACTTCTAAATACCAGTATGCTCATGGAAAAGAAAAGCAGCGTCCAACTCGTTGCCCTGTCAAGAACAAACCTGAGGCACATATGTGCAAGTCATACACTGCCACAAGTTATCCATGCCCACCCAGCCCCAAGTCCCGATTTGTCCATTCCGTCATGCCATCTGCAGTTACAGAAGCAGCAGGAGCCAGAACACAAGCGGCCTCATCGACTACCCCCAAAAACACCATATCAATCCCTGCTACCCTCACCGTCTGCCTGGACTGGTCACCCCAAGATGATGGCATTGACGTTGTATTGCCGCATTCAACTGGAACACCTCCATCAAGGGAAGATATAGATTCCTACATCAGCGGCGTTCTTTGTGGTTCCACTAAAGGAAGGAGATTACGAGTGTTTGCTGAGATTTATGCTGTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

275

Amino Acids

30.3

Weight (kDa)

9.41

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
AccBSI CCGCTC 2 cut(s) 187, 254
AciI CCGC 9 cut(s) 136, 149, 185, 218, 221, 254, 602, 704, 756
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 2 cut(s) 124, 711
AjnI CCWGG 2 cut(s) 383, 660
AleI CACNNNNGTG 1 cut(s) 487
Alw26I GTCTC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 384
AoxI GGCC 2 cut(s) 215, 603
ApeKI GCWGC 2 cut(s) 442, 581
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 381
AsuHPI GGTGA 4 cut(s) 289, 289, 643, 663
AvaII GGWCC 1 cut(s) 381
AxyI CCTNAGG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 454, 593
BccI CCATC 4 cut(s) 274, 571, 677, 733
BceAI ACGGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 2 cut(s) 385, 662
BcoDI GTCTC 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 567
Bme1390I CCNGG 2 cut(s) 385, 662
Bme18I GGWCC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 2 cut(s) 589, 772
BmrFI CCNGG 2 cut(s) 385, 662
BmsI GCATC 3 cut(s) 162, 198, 338
BpiI GAAGAC 1 cut(s) 359
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpmI CTGGAG 2 cut(s) 182, 218
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 418, 671, 718
Bse21I CCTNAGG 1 cut(s) 477
BseBI CCWGG 2 cut(s) 385, 662
BseDI CCNNGG 1 cut(s) 384
BseMII CTCAG 4 cut(s) 40, 98, 468, 795
BseNI ACTGG 3 cut(s) 418, 671, 718
BseRI GAGGAG 4 cut(s) 281, 318, 321, 328
BseXI GCAGC 2 cut(s) 454, 593
BseYI CCCAGC 1 cut(s) 527
BshFI GGCC 2 cut(s) 217, 605
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 523
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 2 cut(s) 217, 605
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 9 cut(s) 136, 149, 185, 218, 221, 254, 602, 704, 756
BspANI GGCC 2 cut(s) 217, 605
BspCNI CTCAG 4 cut(s) 39, 97, 469, 796
BspLI GGNNCC 2 cut(s) 589, 772
BspMAI CTGCAG 1 cut(s) 571
BsrBI CCGCTC 2 cut(s) 187, 254
BsrI ACTGG 3 cut(s) 418, 671, 718
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 385, 662
Bst4CI ACNGT 3 cut(s) 232, 287, 655
BstACI GRCGYC 1 cut(s) 51
BstDEI CTNAG 4 cut(s) 26, 84, 477, 804
BstEII GGTNACC 2 cut(s) 295, 669
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 6 cut(s) 154, 181, 190, 217, 528, 587
BstNI CCWGG 2 cut(s) 385, 662
BstPI GGTNACC 2 cut(s) 295, 669
BstSCI CCNGG 2 cut(s) 383, 660
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 454, 593
BstV2I GAAGAC 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 683
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 217, 605
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 501
CaiI CAGNNNCTG 1 cut(s) 384
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 381
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 73
CviAII CATG 3 cut(s) 428, 519, 559
CviJI RGCY 4 cut(s) 217, 531, 590, 605
CviKI_1 RGCY 4 cut(s) 217, 531, 590, 605
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 4 cut(s) 26, 84, 477, 804
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 477
Eco91I GGTNACC 2 cut(s) 295, 669
EcoO109I RGGNCCY 1 cut(s) 381
EcoO65I GGTNACC 2 cut(s) 295, 669
EcoRII CCWGG 2 cut(s) 383, 660
FaeI CATG 3 cut(s) 431, 522, 562
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 1 cut(s) 523
FatI CATG 3 cut(s) 427, 518, 558
FauNDI CATATG 1 cut(s) 486
GlaI GCGC 1 cut(s) 82
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 2 cut(s) 182, 218
HaeIII GGCC 2 cut(s) 217, 605
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 3 cut(s) 431, 522, 562
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 5 cut(s) 166, 202, 355, 392, 743
HpaII CCGG 1 cut(s) 300
HphI GGTGA 4 cut(s) 289, 289, 643, 663
Hpy166II GTNNAC 3 cut(s) 49, 55, 235
Hpy188I TCNGA 6 cut(s) 29, 111, 171, 207, 228, 340
Hpy188III TCNNGA 5 cut(s) 161, 197, 396, 466, 540
Hpy8I GTNNAC 3 cut(s) 49, 55, 235
Hpy99I CGWCG 2 cut(s) 115, 135
HpyAV CCTTC 1 cut(s) 777
HpyCH4III ACNGT 3 cut(s) 232, 287, 655
HpyCH4IV ACGT 3 cut(s) 51, 130, 693
HpyCH4V TGCA 7 cut(s) 175, 211, 329, 363, 492, 569, 820
HpyF10VI GCNNNNNNNGC 6 cut(s) 154, 181, 190, 217, 528, 587
HpyF3I CTNAG 4 cut(s) 26, 84, 477, 804
HpySE526I ACGT 3 cut(s) 51, 130, 693
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 3 cut(s) 431, 522, 562
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 2 cut(s) 251, 587
Lsp1109I GCAGC 2 cut(s) 454, 593
LweI GCATC 3 cut(s) 162, 198, 338
MaeII ACGT 3 cut(s) 51, 130, 693
MaeIII GTNAC 5 cut(s) 99, 295, 401, 571, 669
MalI GATC 1 cut(s) 372
MbiI CCGCTC 2 cut(s) 187, 254
MboI GATC 1 cut(s) 370
MboII GAAGA 3 cut(s) 327, 364, 746
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 134, 473
MslI CAYNNNNRTG 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 756
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 385, 662
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 2 cut(s) 385, 662
MwoI GCNNNNNNNGC 6 cut(s) 154, 181, 190, 217, 528, 587
NdeI CATATG 1 cut(s) 486
NdeII GATC 1 cut(s) 370
NlaIII CATG 3 cut(s) 431, 522, 562
NlaIV GGNNCC 2 cut(s) 589, 772
NmuCI GTSAC 3 cut(s) 99, 295, 669
OliI CACNNNNGTG 1 cut(s) 487
PctI GAATGC 1 cut(s) 706
PfeI GAWTC 4 cut(s) 166, 202, 392, 743
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 383, 660
PspEI GGTNACC 2 cut(s) 295, 669
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 2 cut(s) 383, 660
PspN4I GGNNCC 2 cut(s) 589, 772
PspPI GGNCC 1 cut(s) 381
PspPPI RGGWCCY 1 cut(s) 381
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 1 cut(s) 384
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 487
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 385, 662
SfaNI GCATC 3 cut(s) 162, 198, 338
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 487
Sse9I AATT 1 cut(s) 8
SsiI CCGC 9 cut(s) 136, 149, 185, 218, 221, 254, 602, 704, 756
StyD4I CCNGG 2 cut(s) 383, 660
TaaI ACNGT 3 cut(s) 232, 287, 655
TaiI ACGT 3 cut(s) 54, 133, 696
TaqI TCGA 3 cut(s) 320, 397, 611
TasI AATT 1 cut(s) 8
TauI GCSGC 8 cut(s) 138, 151, 187, 220, 223, 605, 706, 759
TfiI GAWTC 4 cut(s) 166, 202, 392, 743
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 3 cut(s) 99, 295, 669
TseI GCWGC 2 cut(s) 442, 581
Tsp45I GTSAC 3 cut(s) 99, 295, 669
TspGWI ACGGA 4 cut(s) 87, 128, 348, 544
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 381
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.