RchiOBHm_Chr7g0225501

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000708
Physical Location & Seq
Reverse (-)
48271455 .. 48275049
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20197

Sequence Viewer

Length: 738 bp
ATGGAGAACCTTCACGGCAACTCGAGAGTTCCGAAATTGAGCCCGCAGCACTTGATGAAAGGAGGAAGCTTCGAGAATGCGGAACTCGACTCGCCGCTCCTCAGGTACCTGCGATGCTCTCAGTCGCCGGTCGACGGCTTCAAGCAGCGGCGCCACCCGTTCTCTCCGGTGGAGAATCTGATGGCGGCGGCGAGGTCTTCACCGGTGAGAACGGTGCCGAGGGAGGAGGTCCTGGTGATGGACGGCGTTTTGGTCACCAATGGAAAGAGGAGTTCGAGGTCGGGTGGTTCTGGTTCGCCTTCATCTACTTCTTCGGATTCTTTGGGGAAGACTCTCTACAAAGGCCAGTTTGTACTTGGAAAAGAAAATTTGCGTCCAACTCGTTTTCCTGGCAAGAACAAATCTGAGTTGTGCAAGTCTACACCTAGATCAGGATCATGCACACCCAGCTCAAAGTCCCGCCTTGTCTATCAGATCATGGCATCAGCTGTTACTGAAGCAGCAGCAGCAGCAGCAGCAGCCTTGTCTCCAAAACTGAATAGGACCAGCAAGACCCCCATTACTGTTATCTGCTGCAGAGACTGGTCACCCCAAGATGATGGCATTGAGGTTGTCTTGCCTTCTTCAACTGAAAAACCTCCATCAAAGGCAGATGTAGATGAGTACATCACTGCTTCTCTGTATGGTCCTACTACAAGAAGGAGATTGTCAGTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

245

Amino Acids

26.47

Weight (kDa)

9.55

Isoelectric Point (pI)

71.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
Acc65I GGTACC 1 cut(s) 105
AccB1I GGYRCC 3 cut(s) 105, 150, 214
AccBSI CCGCTC 1 cut(s) 97
AccI GTMKAC 2 cut(s) 132, 419
AciI CCGC 7 cut(s) 44, 80, 95, 148, 185, 188, 460
AclWI GGATC 1 cut(s) 442
AcsI RAATTY 2 cut(s) 367, 723
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 3 cut(s) 107, 354, 665
AfiI CCNNNNNNNGG 3 cut(s) 134, 238, 431
AgeI ACCGGT 1 cut(s) 202
AgsI TTSAA 2 cut(s) 142, 627
AjnI CCWGG 2 cut(s) 231, 388
AluBI AGCT 3 cut(s) 69, 450, 488
AluI AGCT 3 cut(s) 69, 450, 488
Alw26I GTCTC 2 cut(s) 531, 573
AlwI GGATC 1 cut(s) 442
AlwNI CAGNNNCTG 1 cut(s) 582
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 343
ApoI RAATTY 2 cut(s) 367, 723
AsiGI ACCGGT 1 cut(s) 202
Asp718I GGTACC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 3 cut(s) 229, 543, 686
AsuHPI GGTGA 5 cut(s) 192, 217, 247, 247, 579
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 3 cut(s) 229, 543, 686
AxyI CCTNAGG 1 cut(s) 101
BanI GGYRCC 3 cut(s) 105, 150, 214
BanII GRGCYC 1 cut(s) 44
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbsI GAAGAC 2 cut(s) 189, 335
BccI CCATC 4 cut(s) 175, 232, 593, 649
BceAI ACGGC 3 cut(s) 31, 151, 259
BciT130I CCWGG 2 cut(s) 233, 390
BcoDI GTCTC 2 cut(s) 531, 573
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 233, 390
Bme18I GGWCC 3 cut(s) 229, 543, 686
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 3 cut(s) 229, 543, 686
BmiI GGNNCC 3 cut(s) 107, 152, 216
BmrFI CCNGG 2 cut(s) 233, 390
BmsI GCATC 2 cut(s) 104, 491
BpiI GAAGAC 2 cut(s) 189, 335
BsaBI GATNNNNATC 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 218
BsaWI WCCGGW 2 cut(s) 166, 202
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 238, 431
Bse118I RCCGGY 2 cut(s) 127, 202
Bse1I ACTGG 2 cut(s) 346, 587
Bse21I CCTNAGG 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 433
BseBI CCWGG 2 cut(s) 233, 390
BseDI CCNNGG 1 cut(s) 218
BseJI GATNNNNATC 1 cut(s) 433
BseLI CCNNNNNNNGG 3 cut(s) 134, 238, 431
BseMII CTCAG 3 cut(s) 115, 134, 396
BseNI ACTGG 2 cut(s) 346, 587
BseRI GAGGAG 3 cut(s) 89, 239, 283
BseYI CCCAGC 1 cut(s) 446
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 345
BshNI GGYRCC 3 cut(s) 105, 150, 214
BshTI ACCGGT 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 3 cut(s) 128, 167, 203
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 3 cut(s) 134, 238, 431
BsmAI GTCTC 2 cut(s) 531, 573
BsmFI GGGAC 1 cut(s) 442
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 1 cut(s) 345
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 428, 434, 474
BspACI CCGC 7 cut(s) 44, 80, 95, 148, 185, 188, 460
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 3 cut(s) 114, 133, 397
BspLI GGNNCC 3 cut(s) 107, 152, 216
BspMAI CTGCAG 1 cut(s) 578
BspMI ACCTGC 1 cut(s) 117
BspPI GGATC 1 cut(s) 442
BspT107I GGYRCC 3 cut(s) 105, 150, 214
BsrBI CCGCTC 1 cut(s) 97
BsrFI RCCGGY 2 cut(s) 127, 202
BsrI ACTGG 2 cut(s) 346, 587
BssAI RCCGGY 2 cut(s) 127, 202
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 3 cut(s) 428, 434, 474
BssNI GRCGYC 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 233, 390
Bst4CI ACNGT 2 cut(s) 214, 565
BstACI GRCGYC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 3 cut(s) 101, 120, 405
BstEII GGTNACC 2 cut(s) 253, 585
BstENI CCTNNNNNAGG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 431, 437, 477
BstMAI GTCTC 2 cut(s) 531, 573
BstMBI GATC 3 cut(s) 428, 434, 474
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 6 cut(s) 447, 506, 509, 512, 515, 518
BstNI CCWGG 2 cut(s) 233, 390
BstPI GGTNACC 2 cut(s) 253, 585
BstSCI CCNGG 2 cut(s) 231, 388
BstSFI CTRYAG 1 cut(s) 574
BstV2I GAAGAC 2 cut(s) 189, 335
BstXI CCANNNNNNTGG 1 cut(s) 599
Bsu36I CCTNAGG 1 cut(s) 101
BsuRI GGCC 1 cut(s) 345
BtgZI GCGATG 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 2 cut(s) 669, 717
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 44
CaiI CAGNNNCTG 1 cut(s) 582
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 2 cut(s) 127, 202
Cfr13I GGNCC 3 cut(s) 229, 543, 686
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 106, 353, 664
CspAI ACCGGT 1 cut(s) 202
CviAII CATG 2 cut(s) 438, 478
CviJI RGCY 7 cut(s) 42, 69, 138, 345, 450, 488, 521
CviKI_1 RGCY 7 cut(s) 42, 69, 138, 345, 450, 488, 521
CviQI GTAC 3 cut(s) 106, 353, 664
DdeI CTNAG 3 cut(s) 101, 120, 405
DinI GGCGCC 1 cut(s) 152
DpnI GATC 3 cut(s) 430, 436, 476
DpnII GATC 3 cut(s) 428, 434, 474
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 3 cut(s) 229, 543, 686
Eco57I CTGAAG 1 cut(s) 516
Eco81I CCTNAGG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 22
Eco91I GGTNACC 2 cut(s) 253, 585
EcoNI CCTNNNNNAGG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 229
EcoO65I GGTNACC 2 cut(s) 253, 585
EcoRII CCWGG 2 cut(s) 231, 388
EcoT38I GRGCYC 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 152
EheI GGCGCC 1 cut(s) 152
FaeI CATG 2 cut(s) 441, 481
FaiI YATR 3 cut(s) 439, 479, 684
FaqI GGGAC 1 cut(s) 442
FatI CATG 2 cut(s) 437, 477
FauI CCCGC 2 cut(s) 51, 467
FblI GTMKAC 2 cut(s) 132, 419
FriOI GRGCYC 1 cut(s) 44
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 152
GsaI CCCAGC 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 1 cut(s) 345
HapII CCGG 3 cut(s) 128, 167, 203
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 2 cut(s) 441, 481
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 4 cut(s) 89, 175, 317, 331
HpaII CCGG 3 cut(s) 128, 167, 203
HphI GGTGA 5 cut(s) 192, 217, 247, 247, 579
Hpy166II GTNNAC 2 cut(s) 133, 420
Hpy188I TCNGA 5 cut(s) 33, 180, 316, 406, 474
Hpy188III TCNNGA 3 cut(s) 24, 73, 432
Hpy8I GTNNAC 2 cut(s) 133, 420
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 4 cut(s) 20, 309, 630, 693
HpyCH4III ACNGT 2 cut(s) 214, 565
HpyCH4V TGCA 3 cut(s) 414, 441, 576
HpyF10VI GCNNNNNNNGC 6 cut(s) 447, 506, 509, 512, 515, 518
HpyF3I CTNAG 3 cut(s) 101, 120, 405
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 2 cut(s) 441, 481
HspAI GCGC 1 cut(s) 151
KasI GGCGCC 1 cut(s) 150
KpnI GGTACC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 428, 434, 474
LmnI GCTCC 1 cut(s) 102
LweI GCATC 2 cut(s) 104, 491
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 3 cut(s) 253, 490, 585
MalI GATC 3 cut(s) 430, 436, 476
MbiI CCGCTC 1 cut(s) 97
MboI GATC 3 cut(s) 428, 434, 474
MboII GAAGA 4 cut(s) 189, 303, 340, 615
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 35, 367, 723
Mly113I GGCGCC 1 cut(s) 151
MlyI GAGTC 2 cut(s) 83, 325
MmeI TCCRAC 1 cut(s) 401
MspA1I CMGCKG 2 cut(s) 148, 488
MspI CCGG 3 cut(s) 128, 167, 203
MspR9I CCNGG 2 cut(s) 233, 390
Mva1269I GAATGC 1 cut(s) 82
MvaI CCWGG 2 cut(s) 233, 390
MwoI GCNNNNNNNGC 6 cut(s) 447, 506, 509, 512, 515, 518
NarI GGCGCC 1 cut(s) 151
NdeII GATC 3 cut(s) 428, 434, 474
NlaIII CATG 2 cut(s) 441, 481
NlaIV GGNNCC 3 cut(s) 107, 152, 216
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 253, 585
PaeR7I CTCGAG 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 175, 317
PinAI ACCGGT 1 cut(s) 202
PleI GAGTC 2 cut(s) 83, 325
PluTI GGCGCC 1 cut(s) 154
PpsI GAGTC 2 cut(s) 83, 325
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 231, 388
PspEI GGTNACC 2 cut(s) 253, 585
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 231, 388
PspN4I GGNNCC 3 cut(s) 107, 152, 216
PspPI GGNCC 3 cut(s) 229, 543, 686
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 1 cut(s) 578
PstNI CAGNNNCTG 1 cut(s) 582
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 3 cut(s) 107, 354, 665
RsaNI GTAC 3 cut(s) 106, 353, 664
SalI GTCGAC 1 cut(s) 131
Sau3AI GATC 3 cut(s) 428, 434, 474
Sau96I GGNCC 3 cut(s) 229, 543, 686
SchI GAGTC 2 cut(s) 83, 325
ScrFI CCNGG 2 cut(s) 233, 390
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 2 cut(s) 104, 491
SfcI CTRYAG 1 cut(s) 574
SfoI GGCGCC 1 cut(s) 152
Sfr274I CTCGAG 1 cut(s) 22
SgrAI CRCCGGYG 1 cut(s) 202
SinI GGWCC 3 cut(s) 229, 543, 686
SlaI CTCGAG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 3 cut(s) 35, 367, 723
SsiI CCGC 7 cut(s) 44, 80, 95, 148, 185, 188, 460
SspDI GGCGCC 1 cut(s) 150
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 231, 388
TaaI ACNGT 2 cut(s) 214, 565
TaqI TCGA 5 cut(s) 23, 72, 87, 132, 275
TasI AATT 3 cut(s) 35, 367, 723
TatI WGTACW 2 cut(s) 352, 663
TauI GCSGC 4 cut(s) 97, 151, 188, 191
TfiI GAWTC 2 cut(s) 175, 317
TscAI CASTG 2 cut(s) 676, 717
TseFI GTSAC 2 cut(s) 253, 585
Tsp45I GTSAC 2 cut(s) 253, 585
TspDTI ATGAA 2 cut(s) 71, 291
TspRI CASTG 2 cut(s) 676, 717
VpaK11BI GGWCC 3 cut(s) 229, 543, 686
XagI CCTNNNNNAGG 1 cut(s) 429
XapI RAATTY 2 cut(s) 367, 723
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XhoI CTCGAG 1 cut(s) 22
XmiI GTMKAC 2 cut(s) 132, 419
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.