Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Reverse (-)

50477156 .. 50479061

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAATCTTAGGCTTTACCACTTGTTTGTCAACATCAAAGAAGAGTTTGTACATGGAAAAGAAAATTTGCATCCAACTTCTTTCCCTGCCAAGAACAAATCTGAGGCACAGATGTACAAGTCTACAAGTAGCTCAGGATTATCCACACCCAGCCCAAAGTCCCACTTTGCCCATCAGGTCATGGCCTCAGCTGCTACAGAAGCAGCAGCAGCAGCGTTAACCTCATCGCCAAAGCCAAAGAACACCAGTGAGACCCCAATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGGCTCCAACTGAAATACCTTCATCGAAGGAAGATGTGGATGCAGCCAGCACTGCTGGGCTGAGTCTTGTCTATGGTCCTACTACAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

147

Amino Acids

15.86

Weight (kDa)

6.2

Isoelectric Point (pI)

64.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	64, 429
AfaI	GTAC	2 cut(s)	51, 116
AluBI	AGCT	3 cut(s)	132, 191, 273
AluI	AGCT	3 cut(s)	132, 191, 273
Alw26I	GTCTC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	7 cut(s)	191, 203, 206, 209, 212, 273, 359
ApoI	RAATTY	2 cut(s)	64, 429
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	33, 65
BbvCI	CCTCAGC	1 cut(s)	187
BbvI	GCAGC	7 cut(s)	178, 215, 218, 221, 224, 260, 371
BccI	CCATC	2 cut(s)	180, 293
BcoDI	GTCTC	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	7 cut(s)	192, 204, 207, 210, 213, 274, 360
BlsI	GCNGC	7 cut(s)	193, 205, 208, 211, 214, 275, 361
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	321
BmsI	GCATC	2 cut(s)	79, 346
Bpu10I	CCTNAGC	2 cut(s)	133, 187
BsaI	GGTCTC	1 cut(s)	245
Bse1I	ACTGG	2 cut(s)	246, 287
BseGI	GGATG	2 cut(s)	70, 361
BseMII	CTCAG	4 cut(s)	93, 147, 201, 368
BseNI	ACTGG	2 cut(s)	246, 287
BseXI	GCAGC	7 cut(s)	178, 215, 218, 221, 224, 260, 371
BseYI	CCCAGC	2 cut(s)	149, 371
BshFI	GGCC	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	245
Bsp1407I	TGTACA	2 cut(s)	49, 114
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	4 cut(s)	94, 146, 200, 369
BspLI	GGNNCC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	245
BsrGI	TGTACA	2 cut(s)	49, 114
BsrI	ACTGG	2 cut(s)	246, 287
Bst4CI	ACNGT	2 cut(s)	265, 420
Bst6I	CTCTTC	1 cut(s)	36
BstAUI	TGTACA	2 cut(s)	49, 114
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	5 cut(s)	8, 102, 133, 187, 377
BstEII	GGTNACC	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	70, 361
BstMAI	GTCTC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 200, 209, 212, 368
BstPI	GGTNACC	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	7 cut(s)	178, 215, 218, 221, 224, 260, 371
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	70, 361
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	3 cut(s)	253, 366, 416
Cac8I	GCNNGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	50, 115
CviAII	CATG	2 cut(s)	53, 181
CviQI	GTAC	2 cut(s)	50, 115
DdeI	CTNAG	5 cut(s)	8, 102, 133, 187, 377
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	285
EcoO65I	GGTNACC	1 cut(s)	285
FaeI	CATG	2 cut(s)	56, 184
FaiI	YATR	3 cut(s)	54, 182, 390
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	52, 180
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	7 cut(s)	192, 204, 207, 210, 213, 274, 360
FokI	GGATG	2 cut(s)	57, 368
Fsp4HI	GCNGC	7 cut(s)	192, 204, 207, 210, 213, 274, 360
GluI	GCNGC	7 cut(s)	192, 204, 207, 210, 213, 274, 360
GsaI	CCCAGC	2 cut(s)	153, 375
HaeIII	GGCC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	56, 184
HincII	GTYRAC	2 cut(s)	31, 219
HindII	GTYRAC	2 cut(s)	31, 219
HinfI	GANTC	2 cut(s)	4, 379
HpaI	GTTAAC	1 cut(s)	219
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	3 cut(s)	31, 123, 219
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	3 cut(s)	31, 123, 219
HpyAV	CCTTC	3 cut(s)	337, 345, 399
HpyCH4III	ACNGT	2 cut(s)	265, 420
HpyCH4V	TGCA	3 cut(s)	70, 276, 359
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 200, 209, 212, 368
HpyF3I	CTNAG	5 cut(s)	8, 102, 133, 187, 377
Hsp92II	CATG	2 cut(s)	56, 184
KspAI	GTTAAC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	8 cut(s)	99, 120, 161, 163, 259, 268, 357, 376
Lsp1109I	GCAGC	7 cut(s)	178, 215, 218, 221, 224, 260, 371
LweI	GCATC	2 cut(s)	79, 346
MaeIII	GTNAC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	53, 359
MluCI	AATT	3 cut(s)	64, 258, 429
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	2 cut(s)	98, 347
MnlI	CCTC	4 cut(s)	97, 196, 232, 301
MseI	TTAA	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	191, 273
MwoI	GCNNNNNNNGC	5 cut(s)	191, 200, 209, 212, 368
NlaIII	CATG	2 cut(s)	56, 184
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	7 cut(s)	193, 205, 208, 211, 214, 275, 361
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PspEI	GGTNACC	1 cut(s)	285
PspFI	CCCAGC	2 cut(s)	149, 371
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	392
PvuII	CAGCTG	2 cut(s)	191, 273
RsaI	GTAC	2 cut(s)	51, 116
RsaNI	GTAC	2 cut(s)	50, 115
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	7 cut(s)	192, 204, 207, 210, 213, 274, 360
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	388
SetI	ASST	7 cut(s)	134, 180, 193, 224, 275, 312, 337
SfaNI	GCATC	2 cut(s)	79, 346
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	392
Sse9I	AATT	3 cut(s)	64, 258, 429
TaaI	ACNGT	2 cut(s)	265, 420
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	64, 258, 429
TatI	WGTACW	2 cut(s)	49, 114
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	3 cut(s)	253, 373, 423
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	7 cut(s)	191, 203, 206, 209, 212, 273, 359
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	17, 327
TspRI	CASTG	3 cut(s)	253, 373, 423
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	64, 429
XmiI	GTMKAC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.