RchiOBHm_Chr4g0424621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000708
Physical Location & Seq
Reverse (-)
50208390 .. 50210189
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39388

Sequence Viewer

Length: 216 bp
ATGGCACCACGTCCTTGCTTCGAGATTCGAACCCCAACTGGTTTAACCGTCCTCCATAGAGTCTATCCTTCTCGATTGGTGCGACTTCGAGCACCAAACATCTGCGACGGAGGAACCGAACACAACCGGCATCAGGTCTCTTTGATTTGGAGAAATGGAGGCCACGATGCCCATTTGCAAGACTGTTACTCCAACTCACCAGAGAGGCTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.18

Weight (kDa)

9.1

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 133
AjiI CACGTC 1 cut(s) 11
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 142
AoxI GGCC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 189
AsuII TTCGAA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 6, 115
BmsI GCATC 2 cut(s) 139, 157
Bpu14I TTCGAA 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 43
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 94
BspANI GGCC 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 6, 115
BspT104I TTCGAA 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 126
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 49, 185
BstBI TTCGAA 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 162
BtrI CACGTC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 126
CviJI RGCY 2 cut(s) 162, 208
CviKI_1 RGCY 2 cut(s) 162, 208
Eco31I GGTCTC 1 cut(s) 142
FaiI YATR 1 cut(s) 57
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 127
HinfI GANTC 2 cut(s) 25, 60
HpaII CCGG 1 cut(s) 127
HphI GGTGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 22, 72
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 2 cut(s) 49, 185
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 10
LpnPI CCDG 3 cut(s) 24, 119, 140
LweI GCATC 2 cut(s) 139, 157
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 94
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 4 cut(s) 62, 104, 152, 198
MseI TTAA 1 cut(s) 44
MspI CCGG 1 cut(s) 127
NlaIV GGNNCC 2 cut(s) 6, 115
NspV TTCGAA 1 cut(s) 28
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 114
PfeI GAWTC 1 cut(s) 25
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 6, 115
SaqAI TTAA 1 cut(s) 44
SchI GAGTC 1 cut(s) 69
SduI GDGCHC 1 cut(s) 94
SetI ASST 2 cut(s) 13, 138
SfaNI GCATC 2 cut(s) 139, 157
SfuI TTCGAA 1 cut(s) 28
TaaI ACNGT 2 cut(s) 49, 185
TaiI ACGT 1 cut(s) 13
TaqI TCGA 4 cut(s) 21, 28, 73, 88
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.